mRNA_C-linearis_contig97.17072.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17072.1
Unique NamemRNA_C-linearis_contig97.17072.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17072.1 vs. uniprot
Match: D8LKZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ8_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.480e-74
Identity = 208/355 (58.59%), Postives = 233/355 (65.63%), Query Frame = 2 
Query:   92 GAAISVHYKDRMSEITLNLAGSVAHRDQEVIALALNLQAALNLATPPVGLRLRVAPGTEAVVCPLSVLAACPAYIATTFQAGMSWFPLLEGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPEPPVQDPLLPPPLGSPLEHDLCFLATGPA--ASPAEGCGRPLTAPPGDRSLGRSRPRPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGSGSPAWGGSPHGFRCEDTGQQDAAVAXXXXXXXXGRRPSTAPAIGASRRRQRQPSSNLSGSHQRERGGFGERFGRGGDEDV--EMDDIGGGRTQNWPGGGAPSGVMGAAGA----GRGRTGPPSECWV 1132
            GA +SV Y D   +I LNLA + A  +++   LAL LQAALNL+TPPVGLRLRVAPG +AV+CPLS + ACP+YIAT +Q GMSWFPLLEGG D                           + P PP  DPLLPPPLGSPL+H+L FLATG    ASP+EGCGRPLTAPPGDR+ G +RP PGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHS SGSPAWG SPHGFRCE+T    A  A         RRP+TAPA+      +RQPSSNLSGS   E G FGERFGRGG  +V  E   +     +  P GG   G   A G     G    GP  ECW 
Sbjct:    6 GAVVSVQYGDCAWDIKLNLAANTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQ-GMSWFPLLEGGGDDHQEAPPNAPPAAPQT-----------QLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTRPHPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWG-SPHGFRCEETTTTTAEDAGA-------RRPATAPAL------RRQPSSNLSGSRN-ENGVFGERFGRGGSVEVNEETGGVAAAHHRPMPDGGGLGGDGRAVGGDVDWGWCGAGPTRECWA 333
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKZ8_ECTSI1.480e-7458.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:201636..203826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006150.1
Exons3
Model size1135
Cds size1056
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17072.1prot_C-linearis_contig97.17072.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 201636..203190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.582391-CDS-C-linearis_contig97:201635..2024381622930830.582391-CDS-C-linearis_contig97:201635..202438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 201636..202438 -
1690881271.83256-CDS-C-linearis_contig97:201635..2024381690881271.83256-CDS-C-linearis_contig97:201635..202438Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 201636..202438 -
1622930830.5995233-CDS-C-linearis_contig97:202937..2031901622930830.5995233-CDS-C-linearis_contig97:202937..203190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 202938..203190 -
1690881271.8445501-CDS-C-linearis_contig97:202937..2031901690881271.8445501-CDS-C-linearis_contig97:202937..203190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 202938..203190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.6193757-UTR-C-linearis_contig97:203190..2032281622930830.6193757-UTR-C-linearis_contig97:203190..203228Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203191..203228 -
1690881271.8551548-UTR-C-linearis_contig97:203190..2032281690881271.8551548-UTR-C-linearis_contig97:203190..203228Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203191..203228 -
1622930830.6360397-UTR-C-linearis_contig97:203785..2038261622930830.6360397-UTR-C-linearis_contig97:203785..203826Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203786..203826 -
1690881271.8655055-UTR-C-linearis_contig97:203785..2038261690881271.8655055-UTR-C-linearis_contig97:203785..203826Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203786..203826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17072.1

>prot_C-linearis_contig97.17072.1 ID=prot_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=352bp
MDFEGAAISVHYKDRMSEITLNLAGSVAHRDQEVIALALNLQAALNLATP
PVGLRLRVAPGTEAVVCPLSVLAACPAYIATTFQAGMSWFPLLEGGDDDE
DDNDDTENDNTPTGVAAAAAAATATRSPEPPVQDPLLPPPLGSPLEHDLC
FLATGPAASPAEGCGRPLTAPPGDRSLGRSRPRPGRREGLGRPVSATPSD
KSFGMRRFRPGKSEGFGRPVTALPSDHSGSGSPAWGGSPHGFRCEDTGQQ
DAAVAAAVAAAAAGRRPSTAPAIGASRRRQRQPSSNLSGSHQRERGGFGE
RFGRGGDEDVEMDDIGGGRTQNWPGGGAPSGVMGAAGAGRGRTGPPSECW
V*
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mRNA from alignment at C-linearis_contig97:201636..203826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17072.1 ID=mRNA_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2191bp|location=Sequence derived from alignment at C-linearis_contig97:201636..203826- (Chordaria linearis ClinC8C monoicous)
TGATGTTCTGCACCCTGAGAGCTCAGCACGGGTGTGATCAGGTATGGATT
GAGTGATTGTCGGTGAAGGATGGACTCCTTGGTTCCTATCGGGTACGCTG
TCATTGTCGTCCCTCGTAGGACCTCCCTCCCGATGCGTACTTGATGCGGA
GAACCTCCTTTCTTTGTGCGTAGGATCCTCGATCCTTGTCCCAGAAGCGG
CTGTACGTAGACGCTTGGATCCGCTGAGTGACAGCGTCATGTTGCCGCCA
ATATCGTATGGATCTCTGCATCTTTGTTCACAAAGTGGCCATGAAAGCCA
TGCCCATCTCCCGAAACCTTGTTTTGAAACAATTGCGGCGCTATGTGGCG
CGATCTTGGAGAGATAACTTGCCGCGTTTGCTTCCTCGTACAATATGCAC
ATATCACATGTACACGGAGAGTTGCGTGCGTGCTTTCAAGGCAGAAAACA
TAGATACGGCTGTGGATCGAATCTAATTTGTCACTGCTTCTCAGAAATTT
CAGGGTAAGTGCCGACGACACGTCGATGCGGGGGCTTTTGAAAATTAAAT
TAAAAGAGTCACGTCGACACATTCCCAATGTATGATGAACGCATGCAGGC
GCCACCCTGAAGCACCGCACACCGCATCCGAGAGCCATGGATTTCGAGGG
GGCTGCCATCTCGGTCCACTACAAGGATCGCATGTCGGAAATTACGCTCA
ACTTGGCTGGGAGCGTTGCCCATCGTGACCAGGAAGTGATTGCGTTAGCT
CTCAACCTGCAGGCGGCTCTCAACCTGGCTACACCCCCAGTAGGATTGAG
GCTCCGGGTGGCGCCAGGCACGGAAGCGGTGGTGTGCCCGCTCAGCGTGC
TTGCCGCATGTCCTGCGTACATCGCCACTACTTTTCAAGGTGGGTGTGGG
TGTTAGCTGGCTCTTTCGGGTTCATACCTCATTGAGTTTGCAGACAAGAA
GTTCGTGCATGGATGAGCGAATGGACGTTCATGCTTTCCCCTGTTCGTTG
GCCTGCTGGTCTTGACCGGGGCGCGCCCACCTCTGCCATTTCTTTCCACA
CGCGACGGTTCAAGCGGGACGTGCAATGTAATTTTTGCAGCGCTGAACTG
TAGTCCCTCCCGAGGAAGGCTGGTGTGGTACGTGTGGTGAACACTCTGTC
GCTTCATCACCACAGCAGTACGCATAGTAGTTCGAGGTTGTTTCGTATTC
AAACGTCTGCACTTCGACTGCTGTTTCCCACTGGCAGATCCCTCTGGAGA
TTATCTCAATCGCTTTTCGTCTGCTAATTGTGTTCTTAATCGCTTTTTGT
TGGCATCCACATGCGCGCGCATGCACCGTTGTCCTATGCAGCAACCCAAC
ACGTAGCTATCTATCCCTTTCCCCCCGGATCGAACCAGCAGGCATGTCTT
GGTTCCCTCTACTAGAGGGCGGAGACGACGACGAAGACGACAACGACGAC
ACAGAAAACGACAACACACCAACGGGAGTAGCAGCAGCAGCAGCAGCAGC
AACAGCAACAAGATCCCCAGAACCCCCAGTCCAAGACCCCCTCCTGCCCC
CGCCCCTGGGATCACCGCTAGAGCATGACCTATGCTTCTTGGCCACGGGG
CCCGCCGCGTCCCCTGCCGAGGGGTGCGGCCGCCCACTCACGGCGCCCCC
GGGCGACCGCTCCCTGGGCCGATCGAGACCTCGCCCCGGTAGACGGGAGG
GCCTCGGGCGGCCAGTGTCCGCCACTCCGAGCGACAAGAGCTTCGGGATG
CGGCGGTTCCGCCCGGGAAAGAGCGAGGGCTTCGGCAGGCCCGTCACGGC
GCTCCCGAGCGATCACAGCGGCAGCGGCAGCCCCGCGTGGGGAGGGAGCC
CGCACGGCTTCCGGTGCGAGGACACCGGCCAGCAGGACGCCGCCGTCGCC
GCCGCCGTCGCCGCCGCCGCCGCCGGCCGCCGGCCGTCCACTGCTCCTGC
TATCGGCGCTTCTAGGCGGCGGCAACGGCAACCATCCTCGAACCTTAGTG
GATCGCACCAGCGCGAGAGGGGAGGGTTTGGGGAGCGCTTCGGGCGAGGG
GGCGACGAGGACGTAGAGATGGACGACATTGGTGGAGGTAGGACGCAAAA
TTGGCCCGGCGGCGGCGCACCTAGCGGTGTCATGGGGGCTGCCGGTGCGG
GTCGGGGTAGAACCGGGCCCCCGAGCGAATGTTGGGTATGA
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Coding sequence (CDS) from alignment at C-linearis_contig97:201636..203826-

>mRNA_C-linearis_contig97.17072.1 ID=mRNA_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at C-linearis_contig97:201636..203826- (Chordaria linearis ClinC8C monoicous)
ATGGATTTCGAGGGGGCTGCCATCTCGGTCCACTACAAGGATCGCATGTC
GGAAATTACGCTCAACTTGGCTGGGAGCGTTGCCCATCGTGACCAGGAAG
TGATTGCGTTAGCTCTCAACCTGCAGGCGGCTCTCAACCTGGCTACACCC
CCAGTAGGATTGAGGCTCCGGGTGGCGCCAGGCACGGAAGCGGTGGTGTG
CCCGCTCAGCGTGCTTGCCGCATGTCCTGCGTACATCGCCACTACTTTTC
AAGATGGATTTCGAGGGGGCTGCCATCTCGGTCCACTACAAGGATCGCAT
GTCGGAAATTACGCTCAACTTGGCTGGGAGCGTTGCCCATCGTGACCAGG
AAGTGATTGCGTTAGCTCTCAACCTGCAGGCGGCTCTCAACCTGGCTACA
CCCCCAGTAGGATTGAGGCTCCGGGTGGCGCCAGGCACGGAAGCGGTGGT
GTGCCCGCTCAGCGTGCTTGCCGCATGTCCTGCGTACATCGCCACTACTT
TTCAAGCAGGCATGTCTTGGTTCCCTCTACTAGAGGGCGGAGACGACGAC
GAAGACGACAACGACGACACAGAAAACGACAACACACCAACGGGAGTAGC
AGCAGCAGCAGCAGCAGCAACAGCAACAAGATCCCCAGAACCCCCAGTCC
AAGACCCCCTCCTGCCCCCGCCCCTGGGATCACCGCTAGAGCATGACCTA
TGCTTCTTGGCCACGGGGCCCGCCGCGTCCCCTGCCGAGGGGTGCGGCCG
CCCACTCACGGCGCCCCCGGGCGACCGCTCCCTGGGCCGATCGAGACCTC
GCCCCGGTAGACGGGAGGGCCTCGGGCGGCCAGTGTCCGCCACTCCGAGC
GACAAGAGCTTCGGGATGCGGCGGTTCCGCCCGGGAAAGAGCGAGGGCTT
CGGCAGGCCCGTCACGGCGCTCCCGAGCGATCACAGCGGCAGCGGCAGCC
CCGCGTGGGGAGGGAGCCCGCACGGCTTCCGGTGCGAGGACACCGGCCAG
CAGGACGCCGCCGTCGCCGCCGCCGTCGCCGCCGCCGCCGCCGGCCGCCG
GCCGTCCACTGCTCCTGCTATCGGCGCTTCTAGGCGGCGGCAACGGCAAC
CATCCTCGAACCTTAGTGGATCGCACCAGCGCGAGAGGGGAGGGTTTGGG
GAGCGCTTCGGGCGAGGGGGCGACGAGGACGTAGAGATGGACGACATTGG
TGGAGGTAGGACGCAAAATTGGCCCGGCGGCGGCGCACCTAGCGGTGTCA
TGGGGGCTGCCGGTGCGGGTCGGGGTAGAACCGGGCCCCCGAGCGAATGT
TGGGTATGACAGGCATGTCTTGGTTCCCTCTACTAGAGGGCGGAGACGAC
GACGAAGACGACAACGACGACACAGAAAACGACAACACACCAACGGGAGT
AGCAGCAGCAGCAGCAGCAGCAACAGCAACAAGATCCCCAGAACCCCCAG
TCCAAGACCCCCTCCTGCCCCCGCCCCTGGGATCACCGCTAGAGCATGAC
CTATGCTTCTTGGCCACGGGGCCCGCCGCGTCCCCTGCCGAGGGGTGCGG
CCGCCCACTCACGGCGCCCCCGGGCGACCGCTCCCTGGGCCGATCGAGAC
CTCGCCCCGGTAGACGGGAGGGCCTCGGGCGGCCAGTGTCCGCCACTCCG
AGCGACAAGAGCTTCGGGATGCGGCGGTTCCGCCCGGGAAAGAGCGAGGG
CTTCGGCAGGCCCGTCACGGCGCTCCCGAGCGATCACAGCGGCAGCGGCA
GCCCCGCGTGGGGAGGGAGCCCGCACGGCTTCCGGTGCGAGGACACCGGC
CAGCAGGACGCCGCCGTCGCCGCCGCCGTCGCCGCCGCCGCCGCCGGCCG
CCGGCCGTCCACTGCTCCTGCTATCGGCGCTTCTAGGCGGCGGCAACGGC
AACCATCCTCGAACCTTAGTGGATCGCACCAGCGCGAGAGGGGAGGGTTT
GGGGAGCGCTTCGGGCGAGGGGGCGACGAGGACGTAGAGATGGACGACAT
TGGTGGAGGTAGGACGCAAAATTGGCCCGGCGGCGGCGCACCTAGCGGTG
TCATGGGGGCTGCCGGTGCGGGTCGGGGTAGAACCGGGCCCCCGAGCGAA
TGTTGGGTATGA
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