mRNA_C-linearis_contig97.17060.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17060.1
Unique NamemRNA_C-linearis_contig97.17060.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.260e-54
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 1
Query:    4 VRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAFL 525
            VR+SVA SS+RTY SGWR+W AFR +IGE  +L GD   A    AL+ FVAWC + +GN A TISGKLAAVQY HRV+  LE+P  APL+  +L G  + H+  GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY  +ARS+E+ A+ +   H VHC RR DV F 
Sbjct:  563 VRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFF 737          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.040e-52
Identity = 94/149 (63.09%), Postives = 117/149 (78.52%), Query Frame = 3
Query:  543 LMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977
            L  + WH+AT V VRFRGHKGDQ+++G+ VTRVR+VA GA SQIGAGGGAVA+LVELM+CH+ALP  APLCS+R    K  ++ GY +AL A  QI+E AG +PK  GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTR
Sbjct:  126 LAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTR 272          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.090e-40
Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 3
Query:  474 FGNSPGAL----LTTRRRRLFDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR--KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYT 974
            F NS G +      TRR   F R  R+L  M W QA RVE+RFRGHKGDQ Q G    R RD   G RS   A GGAVAL+V  +SCH  LP SAPL SYR  ++ ++L Y +AL+A R+I+E +G +PK F LHSLRIGGA+ +AAGG + +RV++REGRWK  S + K YT
Sbjct:  255 FANSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSYRSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYT 425          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.380e-29
Identity = 65/174 (37.36%), Postives = 103/174 (59.20%), Query Frame = 1
Query:    1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522
            +V+ SV  ++ + Y++ W++W  F    G G +L  L AA  I+ L+ F+A    +  NQ  T+ G LAAV++ H++  G E+PTS  L+  A KG+ +    VG K ++RLP+ W+ + +G    S + EGGR++WL LAL+Y LL R+ E+FA +   +HP  C  R  + F
Sbjct:    1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTF 174          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.060e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  714 MSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977
            M+CH+ALP  APLCS R    K  ++ GY +AL A RQI+E AG DPK  GLHSLRIG  T +AAGG +PDR  +REGRWK+ S +LK  TR
Sbjct:    1 MACHLALPEDAPLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTR 92          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.110e-22
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   16 VALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522
            VA S+  TY++ W+ WV +R +    +   D    +++ A  L  ++A+    +GN+  TI+GKL AV+Y H+   G+++P       RA+K        + T+ RMR P++W  +  G   A+ WGEGGR+LWL LA+SY  + R  EIFA     IH      RG+VAF
Sbjct:   14 VAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVAF 182          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.360e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKS 953
            +VEL+S +  LP  APL ++   + +  M    +A  A RQ++ LAG  P+ + LHSLRIGGAT +AAGG  P+ V+ REGRW  +S
Sbjct:    1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAGGASPE-VLRREGRWSGES 86          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.030e-9
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  564 QATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRK-KGRMLGY--RRALKAFRQIIELAG 833
            +A RVEVRFR  KGDQ ++G+  TR R    G    +  GGGAV +++EL+SC   LP SAPL ++   +GR   +  R A +A RQ++ LAG
Sbjct:  237 EADRVEVRFRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTGEGRWSVWTRRHATEALRQVVSLAG 326          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A835YIV1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIV1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.660e-7
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  522 FDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIA-LPGSA----PLCSYRKKGRMLGYRRALKAFRQIIELA---GDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWK 944
            F R+GR L +   H A       RG K DQ            + VG+ + + A GG +A  V + +  +A LP +A    PL S   +   +G  +  +A   I  LA   G DP+ +G HS+R+GGAT +A  G +P R+++  GRW+
Sbjct:   40 FRRQGRPLPAAAGHTADEARFIIRGSKTDQ------------LRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAG-VPGRLIQAAGRWR 175          
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5L0Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.050e-7
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRV 920
            +VEL+S +  LP  APL ++   + +  M    +A  A RQ++ LAG  P+ + LHSLRIGGAT +AA G  P+ V
Sbjct:    1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAEGASPEGV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KTP7_9PHAE2.260e-5455.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K718_9PHAE3.040e-5263.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE2.090e-4053.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE2.380e-2937.36Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL16_9PHAE2.060e-2558.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE4.110e-2236.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K297_9PHAE5.360e-1145.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3G1_9PHAE8.030e-945.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YIV1_9STRA5.660e-732.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5L0Q9_9PHAE9.050e-743.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:4110..5099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size977
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17060.1prot_C-linearis_contig97.17060.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 4110..4692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.7117975-CDS-C-linearis_contig97:4109..43091622930828.7117975-CDS-C-linearis_contig97:4109..4309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4110..4309 -
1690881270.920869-CDS-C-linearis_contig97:4109..43091690881270.920869-CDS-C-linearis_contig97:4109..4309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4110..4309 -
1622930828.7388375-CDS-C-linearis_contig97:4322..46921622930828.7388375-CDS-C-linearis_contig97:4322..4692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4323..4692 -
1690881270.9309843-CDS-C-linearis_contig97:4322..46921690881270.9309843-CDS-C-linearis_contig97:4322..4692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4323..4692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.755666-UTR-C-linearis_contig97:4692..50991622930828.755666-UTR-C-linearis_contig97:4692..5099Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 4693..5099 -
1690881270.9411757-UTR-C-linearis_contig97:4692..50991690881270.9411757-UTR-C-linearis_contig97:4692..5099Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 4693..5099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17060.1

>prot_C-linearis_contig97.17060.1 ID=prot_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
MAVSGSVLSSVGSIRRNFCFVGFGNSPGALLTTRRRRLFDREGRELMSMQ
WHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLV
ELMSCHIALPGSAPLCSYRKKGRMLGYRRALKAFRQIIELAGDDPKLFGL
HSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR
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mRNA from alignment at C-linearis_contig97:4110..5099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous)
CTTGTCCGCCAGTCAGTTGCACTGTCGTCTCAGAGAACTTACTCGTCGGG TTGGCGGTCTTGGGTCGCGTTTCGAGGGTTGATCGGCGAGGGCGCGTTCT TAGGGGACTTGGGGGCAGCTGACCAGATCGACGCCCTGGTAGCCTTCGTT GCATGGTGTTCATCGTCACAGGGTAACCAAGCAGGTACCATTTCGGGGAA GTTGGCGGCGGTACAATACCTTCACCGCGTCGAGGCGGGTTTAGAGATTC CGACCAGTGCCCCTCTGGTAAACCGCGCGCTCAAGGGAGTAGAGAAAGCA CATCTAGCAGTCGGTACCAAGCCCAGGATGCGGTTGCCAGTAGCATGGGC GACAATTCTTCGCGGTGAAACGTTGGCGTCGACGTGGGGCGAGGGGGGTC GCATGTTATGGCTGTGTCTGGCTCTGTCCTATCTTCTGTTGGCTCGATCC GAAGAAATTTTTGCTTCGTCGGCTTCGGGAATTCACCCGGTGCACTGCTA ACGACGCGGCGACGTCGCCTTTTTGACAGAGAAGGGCGGGAGTTGATGTC GATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACA AAGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTC GCGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCT CTTGGTGGAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTC TGTGCTCGTACCGTAAAAAAGGGAGAAGTTGGAACCGTAGTGTTGGGATA CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGA
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Coding sequence (CDS) from alignment at C-linearis_contig97:4110..5099-

>mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous)
ATGGCTGTGTCTGGCTCTGTCCTATCTTCTGTTGGCTCGATCCGAAGAAA
TTTTTGCTTCGTCGGCTTCGGGAATTCACCCGGTGCACTGCTAACGACGC
GGCGACGTCGCCTTTTTGACAGAGAAGGGCGGGAGTTGATGTCGATGCAG
TGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACAAAGGAGA
CCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTCGCGGTCG
GCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCTCTTGGTG
GAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTCTGTGCTC
GTACCGTAAAAAAGGGAGAAATGGCTGTGTCTGGCTCTGTCCTATCTTCT
GTTGGCTCGATCCGAAGAAATTTTTGCTTCGTCGGCTTCGGGAATTCACC
CGGTGCACTGCTAACGACGCGGCGACGTCGCCTTTTTGACAGAGAAGGGC
GGGAGTTGATGTCGATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGA
TTCAGGGGTCACAAAGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCG
CGTACGGGACGTCGCGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCG
GTGCCGTGGCGCTCTTGGTGGAACTTATGTCTTGCCACATTGCGTTACCT
GGAAGCGCACCTCTGTGCTCGTACCGTAAAAAAGGGAGAATGTTGGGATA
CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG
ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA
ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG
ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGATGTTGGGATA
CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG
ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA
ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG
ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGA
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