mRNA_C-linearis_contig97.17095.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17095.1
Unique NamemRNA_C-linearis_contig97.17095.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.360e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -2 
Query:  485 LSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 616
            +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct:  315 VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 358
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BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.440e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -2 
Query:  485 LSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 616
            +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct:  320 VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 363
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Q5_ECTSI2.360e-1490.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L5_9PHAE2.440e-1490.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:353764..354380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size617
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17095.1prot_C-linearis_contig97.17095.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 353787..354158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4817166-UTR-C-linearis_contig97:353763..3537861622930828.4817166-UTR-C-linearis_contig97:353763..353786Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 353764..353786 +
1690881270.848267-UTR-C-linearis_contig97:353763..3537861690881270.848267-UTR-C-linearis_contig97:353763..353786Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 353764..353786 +
1622930828.5129077-UTR-C-linearis_contig97:354158..3543801622930828.5129077-UTR-C-linearis_contig97:354158..354380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 354159..354380 +
1690881270.8743045-UTR-C-linearis_contig97:354158..3543801690881270.8743045-UTR-C-linearis_contig97:354158..354380Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 354159..354380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4951115-CDS-C-linearis_contig97:353786..3541581622930828.4951115-CDS-C-linearis_contig97:353786..354158Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 353787..354158 +
1690881270.863129-CDS-C-linearis_contig97:353786..3541581690881270.863129-CDS-C-linearis_contig97:353786..354158Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 353787..354158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17095.1

>prot_C-linearis_contig97.17095.1 ID=prot_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
MCFRASGSVTKKSLRQVYARETSWYICTPPAPNHKTIPTTKPYLVLSFQS
WIFSRRRRQTNGQIPQLTKCHPLDDVKKKGFRFSWQTQTPKNLVRALFKK
TPTAVELFSVPAANTTSSPAQQQ*
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mRNA from alignment at C-linearis_contig97:353764..354380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17095.1 ID=mRNA_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at C-linearis_contig97:353764..354380+ (Chordaria linearis ClinC8C monoicous)
CAAACACGCGCTGCCATTTCTTTATGTGCTTTCGTGCAAGTGGTAGCGTG
ACGAAAAAAAGCTTGCGACAGGTCTATGCGCGGGAAACTTCGTGGTACAT
ATGCACTCCGCCCGCCCCAAACCACAAAACAATACCGACAACCAAACCTT
ATCTCGTGTTGAGCTTCCAATCTTGGATCTTTTCACGCCGCAGACGTCAG
ACCAATGGGCAAATCCCTCAGCTCACAAAATGCCATCCGTTAGACGATGT
CAAGAAAAAGGGCTTTCGCTTCTCCTGGCAAACACAAACGCCAAAAAACC
TGGTCCGAGCACTCTTTAAAAAAACACCTACTGCTGTAGAACTTTTCTCT
GTGCCAGCTGCCAACACCACATCTTCCCCAGCACAACAGCAGTGACAGAA
GCTCGACACTTCTAGTCTCCTCACAAGGATCAATCTACACCTTCTCCCCG
CCCGGCACGACCCCTAAATAATACACCAGCGTCAATCATTAGCTTTGAGC
AGCACGACCACCTTCGCCTCCACCGCCGCCACCAGAATCTGCGAGTCCTC
CGACAAGTCGCAGCTCACGAACACCACTCTCCCGGTGCGCCTGCACAGCC
TCTGCGCCATGCTCAGG
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Coding sequence (CDS) from alignment at C-linearis_contig97:353764..354380+

>mRNA_C-linearis_contig97.17095.1 ID=mRNA_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig97:353764..354380+ (Chordaria linearis ClinC8C monoicous)
ATGTGCTTTCGTGCAAGTGGTAGCGTGACGAAAAAAAGCTTGCGACAGGT
CTATGCGCGGGAAACTTCGTGGTACATATGCACTCCGCCCGCCCCAAACC
ACAAAACAATACCGACAACCAAACCTTATCTCGTGTTGAGCTTCCAATCT
TGGATCTTTTCACGCCGCAGACGTCAGACCAATGGGCAAATCCCTCAGCT
CACAAAATGCCATCCGTTAGACGATGTCAAGAAAAAGGGCTTTCGCTTCT
CCTGGCAAACACAAACGCCAAAAAACCTGGTCCGAGCACTCTTTAAAAAA
ACACCTACTGCTGTAGAACTTTTCTCTGTGCCAGCTGCCAACACCACATC
TTCCCCAGCACAACAGCAGTGAATGTGCTTTCGTGCAAGTGGTAGCGTGA
CGAAAAAAAGCTTGCGACAGGTCTATGCGCGGGAAACTTCGTGGTACATA
TGCACTCCGCCCGCCCCAAACCACAAAACAATACCGACAACCAAACCTTA
TCTCGTGTTGAGCTTCCAATCTTGGATCTTTTCACGCCGCAGACGTCAGA
CCAATGGGCAAATCCCTCAGCTCACAAAATGCCATCCGTTAGACGATGTC
AAGAAAAAGGGCTTTCGCTTCTCCTGGCAAACACAAACGCCAAAAAACCT
GGTCCGAGCACTCTTTAAAAAAACACCTACTGCTGTAGAACTTTTCTCTG
TGCCAGCTGCCAACACCACATCTTCCCCAGCACAACAGCAGTGA
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