mRNA_C-linearis_contig97.17061.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17061.1
Unique NamemRNA_C-linearis_contig97.17061.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.300e-58
Identity = 107/204 (52.45%), Postives = 136/204 (66.67%), Query Frame = -3 
Query:    4 SSCRDVVALRFQ*GGLGAESRRSLYVGIGRELVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 612
            S  R    +R + GG     RRSLY  +  E VR+SVA SS+RTY SGWR+W AFR +IGE  +L GD   A    AL+ FVAWC + +GN A TISGKLAAVQY HRV+  LE+P  APL+  +L G  + H+  GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY  +ARS+E+ A+ +   H VHC RR DV
Sbjct:  536 SEPRSRALMRVEPGG-----RRSLYRRLSGEYVRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDV 734
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BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.950e-29
Identity = 64/172 (37.21%), Postives = 102/172 (59.30%), Query Frame = -3 
Query:    4 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 519
            +V+ SV  ++ + Y++ W++W  F    G G +L  L AA  I+ L+ F+A    +  NQ  T+ G LAAV++ H++  G E+PTS  L+  A KG+ +    VG K ++RLP+ W+ + +G    S + EGGR++WL LAL+Y LL R+ E+FA +   +HP  C  R  +
Sbjct:    1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSL 172
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BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.500e-23
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = -3 
Query:    4 LIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 441
            +IGE  +L GD   A    AL+ F AWC + +G +  +                              L GV + H+  GTK R R+PV+W T+L G+ L ++WG GGR LWL LALSY L+ARS+E+FA+ +   H VHC RR DV
Sbjct:    1 MIGESEYLSGDADRAGLEQALLEFAAWCCADKGGRVXS------------------------------LLGVARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDV 117
[Close]
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.600e-22
Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = -3 
Query:    1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVA 519
            L    VA S+  TY++ W+ WV +R +    +   D    +++ A  L  ++A+    +GN+  TI+GKL AV+Y H+   G+++P       RA+K        + T+ RMR P++W  +  G   A+ WGEGGR+LWL LA+SY  + R  EIFA     IH      RG+VA
Sbjct:    9 LSTVGVAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVA 181
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTP7_9PHAE1.300e-5852.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE2.950e-2937.21Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K718_9PHAE2.500e-2339.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE8.600e-2235.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:4581..5311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.2225704-UTR-C-linearis_contig97:4580..49361622930828.2225704-UTR-C-linearis_contig97:4580..4936Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 4581..4936 +
1690881270.7628646-UTR-C-linearis_contig97:4580..49361690881270.7628646-UTR-C-linearis_contig97:4580..4936Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 4581..4936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.2436187-CDS-C-linearis_contig97:4936..53111622930828.2436187-CDS-C-linearis_contig97:4936..5311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4937..5311 +
1690881270.7741785-CDS-C-linearis_contig97:4936..53111690881270.7741785-CDS-C-linearis_contig97:4936..5311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 4937..5311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17061.1prot_C-linearis_contig97.17061.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 4937..5311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17061.1

>prot_C-linearis_contig97.17061.1 ID=prot_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp
MNTMQRRLPGRRSGQLPPSPLRTRPRRSTLETRPKTANPTSKFSETTVQL
TGGQVRVQYRHTEIDGFRRQDLLTEIVTPPHPDNCSQEPSSHCVSRCIRP
KSIRGGAGENSKSTARTMFPGWSRG
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mRNA from alignment at C-linearis_contig97:4581..5311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous)
GGCGACGTCGCCGCGTCGTTAGCAGTGCACCGGGTGAATTCCCGAAGCCG
ACGAAGCAAAAATTTCTTCGGATCGAGCCAACAGAAGATAGGACAGAGCC
AGACACAGCCATAACATGCGACCCCCCTCGCCCCACGTCGACGCCAACGT
TTCACCGCGAAGAATTGTCGCCCATGCTACTGGCAACCGCATCCTGGGCT
TGGTACCGACTGCTAGATGTGCTTTCTCTACTCCCTTGAGCGCGCGGTTT
ACCAGAGGGGCACTGGTCGGAATCTCTAAACCCGCCTCGACGCGGTGAAG
GTATTGTACCGCCGCCAACTTCCCCGAAATGGTACCTGCTTGGTTACCCT
GTGACGATGAACACCATGCAACGAAGGCTACCAGGGCGTCGATCTGGTCA
GCTGCCCCCAAGTCCCCTAAGAACGCGCCCTCGCCGATCAACCCTCGAAA
CGCGACCCAAGACCGCCAACCCGACGAGTAAGTTCTCTGAGACGACAGTG
CAACTGACTGGCGGACAAGTTCGCGTCCAATACCGACATACAGAGATCGA
CGGCTTTCGGCGCCAAGACCTCCTCACTGAAATCGTAACGCCACCACATC
CCGACAACTGCTCGCAAGAACCATCCTCCCATTGCGTCTCCCGATGCATC
AGACCAAAAAGTATACGTGGGGGGGCTGGGGAAAACTCCAAATCAACGGC
GCGGACAATGTTCCCCGGGTGGAGCCGAGGC
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Coding sequence (CDS) from alignment at C-linearis_contig97:4581..5311+

>mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous)
ATGAACACCATGCAACGAAGGCTACCAGGGCGTCGATCTGGTCAGCTGCC
CCCAAGTCCCCTAAGAACGCGCCCTCGCCGATCAACCCTCGAAACGCGAC
CCAAGACCGCCAACCCGACGAGTAAGTTCTCTGAGACGACAGTGCAACTG
ACTGGCGGACAAGTTCGCGTCCAATACCGACATACAGAGATCGACGGCTT
TCGGCGCCAAGACCTCCTCACTGAAATCGTAACGCCACCACATCCCGACA
ACTGCTCGCAAGAACCATCCTCCCATTGCGTCTCCCGATGCATCAGACCA
AAAAGTATACGTGGGGGGGCTGGGGAAAACTCCAAATCAACGGCGCGGAC
AATGTTCCCCGGGTGGAGCCGAGGCATGAACACCATGCAACGAAGGCTAC
CAGGGCGTCGATCTGGTCAGCTGCCCCCAAGTCCCCTAAGAACGCGCCCT
CGCCGATCAACCCTCGAAACGCGACCCAAGACCGCCAACCCGACGAGTAA
GTTCTCTGAGACGACAGTGCAACTGACTGGCGGACAAGTTCGCGTCCAAT
ACCGACATACAGAGATCGACGGCTTTCGGCGCCAAGACCTCCTCACTGAA
ATCGTAACGCCACCACATCCCGACAACTGCTCGCAAGAACCATCCTCCCA
TTGCGTCTCCCGATGCATCAGACCAAAAAGTATACGTGGGGGGGCTGGGG
AAAACTCCAAATCAACGGCGCGGACAATGTTCCCCGGGTGGAGCCGAGGC
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