mRNA_C-linearis_contig97.17067.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17067.1
Unique NamemRNA_C-linearis_contig97.17067.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:144521..152621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17067.1prot_C-linearis_contig97.17067.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 144521..152539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.714083-CDS-C-linearis_contig97:144520..1447741622930827.714083-CDS-C-linearis_contig97:144520..144774Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 144521..144774 -
1690881270.605735-CDS-C-linearis_contig97:144520..1447741690881270.605735-CDS-C-linearis_contig97:144520..144774Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 144521..144774 -
1622930827.727934-CDS-C-linearis_contig97:152526..1525391622930827.727934-CDS-C-linearis_contig97:152526..152539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 152527..152539 -
1690881270.6197276-CDS-C-linearis_contig97:152526..1525391690881270.6197276-CDS-C-linearis_contig97:152526..152539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 152527..152539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.767926-UTR-C-linearis_contig97:152539..1526211622930827.767926-UTR-C-linearis_contig97:152539..152621Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 152540..152621 -
1690881270.6319973-UTR-C-linearis_contig97:152539..1526211690881270.6319973-UTR-C-linearis_contig97:152539..152621Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 152540..152621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17067.1

>prot_C-linearis_contig97.17067.1 ID=prot_C-linearis_contig97.17067.1|Name=mRNA_C-linearis_contig97.17067.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MTNQGTQHGLNMAHGSYEQNGESSSASHWHGHEFRHDGYMNAEKDGPTVV
DRKSWLLGGDNHQHSRRHHHFAVPPSTCAPMQGIPPMIP
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mRNA from alignment at C-linearis_contig97:144521..152621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17067.1 ID=mRNA_C-linearis_contig97.17067.1|Name=mRNA_C-linearis_contig97.17067.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8101bp|location=Sequence derived from alignment at C-linearis_contig97:144521..152621- (Chordaria linearis ClinC8C monoicous)
GGTGAACTCATTGTGTTTTTTTCGCTGGTAGACATCCAGGAGAGGGCTCA
GGGGCGGAAGACAGACTGGTGATCAGTCTCGGATGACCAATCAAGGTACA
GCGCACCGTACATATGATAGTACATAGATGTTCTCACTGCTGAAGGTTGC
TGTGTGAGAGAGACAGATTGTTTGCGTGCGTACGGGAGAATGGCCCTTCG
GTAGTACAGACAAACCGGAGTTCCTACAAGTATCACCTCTTCGTACAGGC
ATCGGCACCTAATTTACCTACCGCAAGTTCCCGTGATGATACCAAGCGTA
CCTGCTACTCCCTCCTTCTCTCTCTCTGTTCCGTGCTCCATCCGTCTACA
ACTTCAACAAGAGAGAGAGAGAGAGAGAGAGACTGGCGTGTTCGGTGTAT
TTGTTGCATGGCAGCTTCCAAATGTTTGATGTTCCCGTTGATTTCGTGTC
GTGCCCTGCACCGCCACCTCAAGCGCCAACTCGACACTTCTTGGATCAGC
CGGTTCTTGACGCCAGCCAACGCCTGCTTCGATTGCTATGTGGCGCTAAC
TCTTTGCCGGGATCTACAGCAGCGCCGGTTATCTCCCCTTTTGTTGACGA
ACACAACTGACTCTGGATCAGCTGCAACATCACGCATACACCGAAGAGAT
CGAATGAAGAGAGCATGTTCAAGAATTCCCTATATATATTTTTTCTCGTG
TGCTCTCTTCCTACATGGCTGCCCTCATTTCTATTAAGGTAGCACGACAG
CTCTCTTGCGCCCCACTCATTGCGTTGTGTGGGGCGTAAGACTTGGTGAC
ACAAAAATAAGCGCGTGCACACAAAAGTATTATTCGTGCCCGTGGAAATG
CTAAAACAGCACTTGCCTCTTCCTTTCAGGGCGAGGCAGATAACCGTTTC
ATTCGCTGCTCACAATCCATGAGGTCTGCGGTAGAACACTCGGCGGACGA
AGAGTAAAGGCAACCCGTTTTTACATGAGAAAAAACAGATGAAGACAGCC
GGTATTTCATTGCTTGTAAAAGAGCCCTGCGACTTCTCGTTTCAAAAAAT
AAAAATAGCAGGCATGGTTGTTGTTGTTGTTGTCTTCACTTTAAACTCGG
TACAGTTGCTAATCCCTAAAATCTAGCAAGATCACAGCCCGTGGTCACAA
AAGTGCTAGAGCCATCAGAGAGTCCTAAAGAACACGCACACTTTTTTAGG
AGGGAAAGGGTACACAAGCCCGAAGAGGTACACCTTATATACCTACAGCA
AGTTATGCGTGTCCAAATCTGAGCTGCACGCCCGCAGTCTCCATTCGGCT
ACAGCAGCATCGCCCCCCCCCCCCGTTCCCGCTTCCTACCAATGAATTAG
CCGACTACAGCGGAACTGCTGTCTGAAGTGCTGTCTGTACAAAAACACAC
GGTAGGCGTGGGAACAAGGATGGAGCACGCAGCTGCTGTCTGAAGTGCTG
CCAGAATGACATTCCGCGGACATACAGTGAAAAAGAACAGCAAACCAAAC
AAAGCCATCACATCAACTGACAATATCCCGAGTCTATCCCGAACGTCTGT
GTTAGGCACAGAGTATTGTGAACATCGACAATGATTAGGAATCAACGAAT
CCACGATGCAGGTACACACTTGAGGCACCCGGGGTATCCGCGCCATCGCT
GTCGCGTCTCTCTACAAAACCAGTGACGTCATCACAAAAACCCAGCACCA
ACATCCATCCAGAAAAAAAAACGAAATAATTGCCAACACATAATGTTTGT
CCGTGCGCCACGGCTCGATGTCATCCGCATGCTCCGGTGCCGCTGCTCCG
GTGCCGCTGTGGCCAGTCCTAGCACGACCACACTCGACCCGCTCCGTCCG
TACACGCTCTCGTCGCTGTCCTTCCCAGCCGGTCCCTCGGTTTCTCCCTC
GTTGCACTTAGGGTGCGTGGTCTTCAAAAAACAAAATCTCGCGCCGAAGG
GGTCAACCAGCCCAGTCTTCAGCTCGTCGCCACCCATCCATCCTCCTTAG
ATGGCGCAGCGAAGCCAGGTTACCGAGACAGTACAGCTCCCTCTAGCAAA
CCTAGGGCCATGTACGTAGTGTCCTTCACCTTTCTGGTGGCGTCTGCCTC
CGCGCACAAAATGAGATGGACATTGCTGCCTAGCATCTGAACTTTTGTGC
CTGACGCACCAGTGCCGACCCAACTCCACCGCTGCGCACGCCTCGCGGCG
GGTGCGCAGCAGCAAGAAGGTATCGGTCCACCCGAGGGTGACCCTGAGGG
TGAGTCTAGCCTTGCTCGCTAGAAAGACCCCCCCCCTCGCTATGGGCCAT
GCCTAAGCGAAAGCCTTGGCAAGGCAGCGACGGGAAGAAGGGAGAGTTGT
AACCGGAGATAATCATTGTTTTTATTGTTTGTATTGTGTTTCTTCACATT
ATTACCTGGTATAATCGAGATTGCTAATCCCAAAAATCTAGCAACTCACA
TCTCGTGGTCACAAAAGTGCTAGAGCCATCAAAAGATCCGAAAGAAAAAC
ACACGCAGGAAATGAGGGTACACAATAATAAGACCGAAGAGGCCCTTCAT
TTCCGCCACCGTTGATGTGTGTCCAACTAACTGACCCACACGGACGCCCG
CAATCTCCATTCGACTACTTACTACAACAGACCTACCCCCCCCCTCGCGT
TCCACTACTTACCGATGCCTAGTTGCCGACTACAGCAAAGTTACTGTCTG
AAGTGCTGCCTGTACAAAGAAATGCGCTAACAGAGTAGAGACAAAAGTTG
AACGCAGCTGTGTAGTTCGATTGGGCGTTCTCTATATTGATTCGTGGCGC
AGGTTGCCTCACCCTCGTGTGTTTTTGTGGTTTTATTTTGGTTTTCTGCT
AGCTACGTTATTATTCGTGGTGCAGGTTGCCTCACCCTTATGTGTTTTTT
TTTGGTTTTCTTTTTGGCTTTCTGCTAGCCATGTTATATTGTTTGCGTAC
TGATGGTAGGCTCCTTGCACTCTGTGACCACGGGGATTGGCCGTGTCTGT
TGGATCAGTACGGGCAAAGGGTGTACTGGGTGGAGAGACCGGGATGGTTC
AAAATGTGAAGACAACAACAACAACAACAGAGGTTACTGCTGTCGGAAGT
GAAGTGCTGTCAGAATGAAAGGCCGCCAACGCTCGGTGAGGAAAAACAAC
AAAAAAGGGTCGTTATCGACCAGTTTTTTCACGAATTCGTGATTTTTCTT
CACAAATTATTTCGTGAACAGAAGCACATCATCACAACAAATACGTGAAA
AAAAAGTCCACGAATCCGTGAATCGATGCGAGCTGAAAAAATCAGCTCGC
ATTCGTGATTTTGTTTTTTTCACGGAATTTTTTAAAAACATGGTCGAGAA
CGACCCTATTAAAAAAAAAAAATGTTATATCTCGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACTTTAAACTCGGTAC
AGTTGCTAATCCCTAAAATCTAGCAAGATCACAGCCCGTGGTCACAAAAG
TGCTAGAGCCATCAGATAATCCTAAAGAACACGCACACTTTTAGGAGGGA
AAGGGTACACAAGCCCGAAGAGGTATACCTTAAATACCTACAGCAAGTTA
TGCGCGTCCAAATCTGAGCTGCACGCCCGCAGTCTCCATTCGACTACAGC
AGCATCGCCCCCCCCCCCCCTTCTCACTTCCTACCAATGAAATAGCCGAC
TACAGCGGAACTGCTGTCGGAAATCCTGCCTGTACAAAAACAAACGGTAG
GCGTGGGAACAAGAATGGAGCACGCAGCTGCTGTCTGAAGTGCTGCCAGA
ATGACATTCCGCGGACATACAGTGAAAAAGAACAGCAAACCAAACAAAGC
CATCACATCAACTGACAATAACCCGAGTCTATCCCGAACGTCTGTGTTAG
GCACAGCATTGTAAACATCGACACTGATTAGGAATCGTTCCACATTGAAG
GGTCTTCCACGATGCAGGTACACTTAAGGCACCCGGGGTATCCGCGCCAT
CGCTGTCGCGTCTCTCTACAAAACCAGTGACGTCATCACAAAAACCCAGC
ACCAACATCCATCCAGAAAAAAAACGAAATAATTGCCAACACATAATGTT
TGTCCGTGCGCCACGGTTCCATGTCGTCCACATGCTCCGGTGCCGCTGCT
CCGGTGCCGCTGTGACCAGTCCTAGCACGACCACACTCGACCCGCTCCGT
CCGTACACGCTCTCGTCGCTGTCCTTCCCAGCCGGTCCCTCGCTTTCTCC
CTCGTTGCACTTAGGGTGCGTGGTCTTCAAAAAACAAAATCTCGCGCCGA
AGGGGTCAACCAGCCCAGTCTTCAGCTCGTCGCCACCCATCCATCCTCCT
TAGATGGCGCAGCGAAGCCAGGTTACCGAGACAGTACAGCTCCCTCTAGC
AAACCTAGGGCCATGTACGTAGTGTCCTTCACCTTTCTGGTGGCGTCTGC
CTCCGCGCGCAAAATGAGATGGACATTGCTGTCTACACCGACGGCCATAA
ATAAAGACCCGTGCATCTGAACTTTTGTGCCTGACGCACCAGTGCCGACC
CAACTCCACCGCTGCGCACGCCTCGCGGCGGGTGCGCAGCAGCAAGAAGG
TATCGTGCCTAAGCAAAAGCCTTGCCAAGGCAGCGAGGGTAGGAGTATAT
AACTAACCAACCAAAGCCATCACAAAAGAAGTCGGTGCAATCACCCGAAT
CCATCCCGAAATCGTCTGTGGTAGACACAAAGTAGCAACGACACCAATTC
ACGACCGGGTGTACCATCATTGCGAGGTGCACGGTGTAGGTACGAATAAC
GCAGACATTTCTGCCGCGTCTCTCTACAAAACCAGTGACGTCATCTAAGA
AACCTACACAAAATATTCGAAAACAAAAAACAGTCCACCTATCCCATATT
ACGTCACTGACTCCTGTGTATTGAACTGGTAATCCACCACTTAGGGATTT
GTCTCTTTGAGGGGAGGTTCTTTCTTTGATCCCGTTTTGATTTATAAAAA
AAGAAGAAACTTTTGCCAAGACATGATGTCATCATGTGTCCGCCTCGCGG
GTCGATGTCGTCCTTGTGCTTTGTTGCCGCTGTGGCCGGTCCCAGCATCG
CCACACTCGACCCGTTCCGTACGTACACGCTCTCGTTGCTGTCCTCTCCA
GCCGGTTCCCAAGCTTTCTCCCTCGTTGCACTCGATCGAGGTGCTGGTCT
ATGATTTTTTTCTCGCACCGAAGGGTCAACTACGCCGCATCAGTTCGTCG
CCAACCGTCCCCGAAGGCCCTTCTCCTTGGCGAAGCCAGTAGGTTATCAA
GACAGCAGTACAGGTCCCTCTATCATCTAGGGCCGTGTACGTAGAGTCCC
TTCACGTCTTTTAGTGGCGCCTGCCTCCGCGCACAAAAACTGAGATGGAC
ATATTGCTCCCTACGCTGACTCCAAAAAGGCCCGCGCACCTGGGGTTTCT
TTCTGTGCCTGACGCACCAACTTATATTATGTAACACAAGAGCCGGTCGC
CCCGGTGGACTAGTGGTTTAACCTCGAACCCACTAGCAGCAAAGTCTGGA
GTTCGATTCCAAGCAAAGGTGTTTCTTTTGCGACTTTGCAGGTGAAAGCG
ATAACATTGCTGAAAAAGCTCGTGAGTACCAAACTTCGACTTAGCACGTT
GACGAGGGAAAGGGATGGCTGCACCCTTCTCGTGATAAAATCCAAGGCAA
GCACCGCAGGAGGAATATTGGGCAAAAAAGAAACAGAAAAAGAAGAAAAA
AGCCCCAGTGTTTACCCCTCATGTGTGACCCCGGTTGGTTCTAGTTGTAC
AGAAAAATACACTGAACAAGTGTAGTACTCTAAATACACCGCAACGTGTA
GTACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAAATGGGA
CGAAAACACACACACACACACACACACATTGTGTACCAGGTAATATGTTT
TACCTGCACATGACCCCAAAAAAACATGACAGATAGTTCATGAGTCTTGA
TTCGTATCCTAAATTGGTTGTAAATAGAAACCAAAGACTAATTCGTAGCT
TCCAACAAATAAGCACGACTTTCTATTTTCGTAATGACTCCCAGATATCG
CACGCAAATGGAGGCATGCGACGAAAAGAGAAAAACGAAAAAGAAAGAAG
CAAACCTGCTACATAAAACGATTCCAGGTAAAACAGAGTTTTCGCCTGAT
TGAGAGCGAAGTTTCCGATTGAGAGCGAGAACCAAAAAAAATGAAAATTC
GGGTCCGGACGCCTCTCGTCATTTCTCGGGAAGTAGGGGGCGGGCTCTTC
CAAGAAGCGGCGCAAATTGAAGGTCTCCTCAGCAGCGTCGCGTGCATATG
CGTCTCATCGCCATCGGCTGCTGCAGCCAGGAGCTACACAAGTTGCTAGA
TTTCCCCAGATTGGCTATTTCTGCCTGAAACTGTTTCAGGGCGCTGTCGC
CTGGCGCGGTGGGCTCTGCTGTAGCTTCTGCTCCGCGGTGTAGCTCCACA
ACCCGTGACTCTCACAGGATGACCAGGGTATCGGCTTGTAGCTATGGGCA
AGGCCTTCACTTCAAGCCGCACAGCAAGCTCTACCTCTCAGCATTAGACC
AGCTACATCGCATCGCACAATCTCGCTCTCAATCCGATACTTCGCTCTCA
ATCAGGCGAATATGTTGTTGTAACAAGACGCACACATCATAGAGCTTCCC
ACCTCCACCCCGGCCGAAGCCTGTTCGACACTTCACCGCCGTCCCCGCAC
CGTGGAAATGGGGGCCCCGCAAAAGGGGCCCCGCAAAATTACAACAATAA
ACGGGGATTTCCATCCAACCTACCGCTGAACATGAGAACCGGTTATAACC
GGTTGCCGATTATACCCATCCCTGAAAAATAGTATTATCTATGTCAGCAC
GTGGTGGTGGAAATCAAGGAAGCGCAGAGAGAGGAAGGAAGGACCCCCAG
CCCGGATGAAACCGCTCGTTCGTTCGACTGGTGTACGCAAAGCTTGCCGC
TGTTCTGTGTTTGTTGCATCCTACCTCGTGCATTTTGTTGTGTTCGTCTC
TCTGGGCAAGGCAGAGTATGTTTTTTGCGCTCGTTGTGTCACACGTAAGC
GCAGCGGGTCACAGCGAAGAAGAGGTCCGCCGTACTCGACCAACACTCAA
AATTGTACACGAGACGTTTGTATACTTCGTATATCCTGTCGAGAAAAAAA
TAAAGGGGACGCTTGGCATGTTCGAGTACAAGAAAGTATTTTGGGGCACG
CGACTGGACCATGGATGGATTATCTCTTTAGGATTTTTTTTCATCGCTTG
CTGAAAACGAAAATAACATCACACGAAAGCCGAGCGCTTGTTGTCAGAGC
GAGATTAAGCCATAGAGAGAAAAAGAGAGAGAGAATACGCTCTCTGGATG
ATGGTAGTTACTTGTCGTGCGCTTTACGATGCGTCGACCTGCATTGTTGG
ATGGTCTAAATGAATACCTTCCTTTGACATTTTGTTTTCCTAAATACCTT
GCATGAAGTACGTGGTGTTCATTCAGTATATACCTCTCATGGTTGTTTCA
GCTGTCAGACAAGCATGTGATGTCCAAGAGGCAGAACATGTAGGACGACG
TGGGGGTTACGGTACTTTGGGTAGGAAAATATTTTCGAGAGGAGGGTAAC
TTCACTCACGAATACGGGTTCGTCACATACATGAAGGATGCATTTTTTGA
GTCTTCTTCGTCCCTCCGCATCCAAAGTGTGCCGATTTGTTCTCATGGAA
GCTTTCAGCACTAGACTTTTGCTTGGCCCGTATTCGCAAGCGTGAAATAA
GCTAAACTGCCACTGTCCCCCTCGCTTTCATGTCACACCACCAACAGGAA
CCCAACACGGTTTAAACATGGCACACGGATCGTACGAACAGAACGGCGAA
AGTAGTAGCGCCAGCCACTGGCATGGACACGAATTCCGGCACGACGGGTA
TATGAACGCGGAAAAGGACGGCCCTACCGTCGTGGATCGCAAAAGCTGGC
TGCTGGGAGGCGACAACCACCAACATTCCCGTCGTCACCACCATTTCGCC
GTGCCGCCGAGTACCTGCGCTCCCATGCAGGGTATTCCCCCCATGATCCC
G
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Coding sequence (CDS) from alignment at C-linearis_contig97:144521..152621-

>mRNA_C-linearis_contig97.17067.1 ID=mRNA_C-linearis_contig97.17067.1|Name=mRNA_C-linearis_contig97.17067.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig97:144521..152621- (Chordaria linearis ClinC8C monoicous)
ATGACCAATCAAGATGACCAATCAAGGAACCCAACACGGTTTAAACATGG
CACACGGATCGTACGAACAGAACGGCGAAAGTAGTAGCGCCAGCCACTGG
CATGGACACGAATTCCGGCACGACGGGTATATGAACGCGGAAAAGGACGG
CCCTACCGTCGTGGATCGCAAAAGCTGGCTGCTGGGAGGCGACAACCACC
AACATTCCCGTCGTCACCACCATTTCGCCGTGCCGCCGAGTACCTGCGCT
CCCATGCAGGGTATTCCCCCCATGATCCCGGAACCCAACACGGTTTAAAC
ATGGCACACGGATCGTACGAACAGAACGGCGAAAGTAGTAGCGCCAGCCA
CTGGCATGGACACGAATTCCGGCACGACGGGTATATGAACGCGGAAAAGG
ACGGCCCTACCGTCGTGGATCGCAAAAGCTGGCTGCTGGGAGGCGACAAC
CACCAACATTCCCGTCGTCACCACCATTTCGCCGTGCCGCCGAGTACCTG
CGCTCCCATGCAGGGTATTCCCCCCATGATCCCG
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