prot_C-linearis_contig96.17055.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17055.1
Unique Nameprot_C-linearis_contig96.17055.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length313
Homology
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BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: A0A6H5KRQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.760e-29
Identity = 176/331 (53.17%), Postives = 194/331 (58.61%), Query Frame = 0 
Query:    1 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGLAVAGDSAPNTKPSAXXXXXXXXXXXXXXXXXXXSGNTNTAGGAAAATVAAHSTQRHSYKAPSPTKTSSAGSKSAAAAADKNPRGCLASLGQVD-----QASASSSATAPLP-PPAQQRDQAPTSG---KPTPGKLSASRFGSFGDN---SSSGIRGDSGALPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--VQDLTSRFGGTGLGP-----GKRSTSGRIAELTRKFEK 312
            M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEYLREDLAKHGLAVAG   PN K       XXXXXXXXXXXXXXX                                   +G +         PRGCLASLGQVD      A+ S++A  PLP PP+QQ+ +  T G   +PTPGKLSASRFGSF ++   SS  + G        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXX                               S  VQ LTSR G  GLGP     GKR+TSGRIAELTRKFEK
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEYLREDLAKHGLAVAGGVVPNRKAQGAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPR---------PRGCLASLGQVDGRVASAAADSTTAAGPLPNPPSQQQQRDQTVGSADRPTPGKLSASRFGSFRNSNADSSGAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRCTVESSSAPAPYTREEQGQEQKSAGGSASTSVQGLTSRLGSAGLGPSAGGGGKRTTSGRIAELTRKFEK 322
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BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Match: D7G4B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.120e-10
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 
Query:    1 MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEY 40
            M TISK EGQRKLSQIL++KR++DP GLLRAQR+GTLNEY
Sbjct:    1 MSTISKAEGQRKLSQILSSKRKEDPVGLLRAQRNGTLNEY 40
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRQ3_9PHAE3.760e-2953.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4B8_ECTSI3.120e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 242..264

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:594489..598648 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17055.1mRNA_C-linearis_contig96.17055.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 594224..609041 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17055.1 ID=prot_C-linearis_contig96.17055.1|Name=mRNA_C-linearis_contig96.17055.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=313bp
MGTISKEEGQRKLSQILTAKRRQDPAGLLRAQRDGTLNEYLREDLAKHGL
AVAGDSAPNTKPSAPSAAATAATAAAAPSKPSSSGNTNTAGGAAAATVAA
HSTQRHSYKAPSPTKTSSAGSKSAAAAADKNPRGCLASLGQVDQASASSS
ATAPLPPPAQQRDQAPTSGKPTPGKLSASRFGSFGDNSSSGIRGDSGALP
TPPPSGAVSAAAAAAGGAAAASSGSGSPRRWTVGAVSSPSTKAKEQQQQQ
QQQQQQQQKRAEGQAAGASTSAAAASSSSVQDLTSRFGGTGLGPGKRSTS
GRIAELTRKFEK*
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