mRNA_C-linearis_contig96.17051.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI) HSP 1 Score: 836 bits (2160), Expect = 3.090e-290 Identity = 506/921 (54.94%), Postives = 623/921 (67.64%), Query Frame = 1
Query: 1 MEQNKKMASEQVKAWKGTFTKSKRGKGDTMTYLRLRKTLVEGLTGDGDGQLEIVPGKVFFRRDMLDSLKKWYNLNSKYNPVDIGVVLDETCVKIDGVVYTVGSVEDGWYSLNVSDFEIEQWELLESRCGDDGGAHDSLVTLEEDLKRYIRSLINDHEALWRSFVPYLRNGQKPKRGVAKIRTDTVLKDVSKG--SAKVRGYLARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGIE*PCTERDEDDAKNMVNVSGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTEE-QKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETKSRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRSLDDYPGEQSPYIGPLDAVGGAMPQKRFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYNIHRAATTQSRAIHGKYKGQVDFKGGAYGILKGAVERELEXXXXXXXXXXXXGGGTELPQPDSDLQRMQRKLELLESENRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALKAKAVCWRTLFRGGRGSAAAAVRTTDHKEHTLLRRPPEKG 2754
M++N K+A EQV+A+ TF + K +TMT+ L TLV+GL GDG+GQLEIV GKV+F+RD LDSLKKWYNLN+KYNP DIGVVL+ETCVK DGVVYTV SVE+GWYSL S+ E+EQWELLESR +DGG +S VTLEEDL+RYIRSL++ HE ++RS VP+ ++GV + TD +L D SK S++ R L VA+MRRLSKLAFVNTSVAD FH LPVRAT EGD GHD A LR F+S +GSLC+L+GL G+ E+D K MV +SG + HG+Y +HIN+A+++LQYSYRL RP+S +EA+ P+C ERKV S HF W++NE +E F +EPFRI+ DP+KMT+AMRFSLERC EV+P + P M K++S+D+ R G L D SNHTG AK L L+ ++ D E G T+ L VY LQ KR EA +EE G +G AKK RKG VPF+ +++ E ++FL GMY NGMK+VLDA+D+ID C G GWCY IL A+VAS + KR F E+QL+G +E Q+++I VV+GL+ R I + FELASAA G D S LRNQGFFFR V +SRN GRMVAGLP KN G A+EHVID DCG WYAV VIGR F+ S+DD GE SPYIGP+DA GG M QKRFN I+ K+GRAYL VENLT Q RTA C++V++ LG+ M PVI DFAS ++S KMM+TRY +HRA T Q+ +YKG VDF GGAY ILKGAVE E E GG DLQ +R+ + E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AL+ +FRG RGSA+AA+RT ++ LRRPP +G
Sbjct: 1 MKKNMKLAEEQVRAYADTFDGTTTRKDETMTFPILISTLVDGLPGDGEGQLEIVRGKVYFKRDELDSLKKWYNLNAKYNPTDIGVVLEETCVKFDGVVYTVESVEEGWYSLRDSNIEMEQWELLESRFSEDGGVSNSPVTLEEDLRRYIRSLLSWHELMYRSLVPF-------QKGVQPVGTDGMLDDWSKRELSSEEREQLESVASMRRLSKLAFVNTSVADIFHALPVRATREGDTGHDEANFLRAFASSKGSLCRLDGLGGLREHGDFMVENDRKLMVRMSGDDLHGAYPSHINYAMQLLQYSYRLTRPISFYEAYLPICAGERKVLSDHFDCWRDNEKSQEDFSVEPFRINGDPKKMTVAMRFSLERCNEVIPNIPPAMVKVLSKDDGRYGTLIDKSNHTGTFTKAAKALPLLKCVMQRDPELGLEES--GPTEFALGQVYNQVGKFLQAKRNEAGEEEGRESGLKGVAKKARKGNVPFARLPYEESFELVKFLLRGMYINGMKRVLDAIDEIDGKCLGDDGWCYDILRVAEVASTSVKKRPVFTEKQLRGVDEVQRRRIAAVVEGLKSRGIRREHFELASAATGVRDMVSPHPLRNQGFFFRRWANFSVNGRRESRNPGRMVAGLPPKNNLSKHGHGSGNGVAREHVIDVDCGYWYAVTNVIGRAFFESVDDPQGELSPYIGPVDARGGVMAQKRFNGIVKKIGRAYLAVENLTIMQFRTACCTLVMSLSTALGIPMSSPVIKDFASGFLSSEKMMETRYYVHRAVTKQTGRFQLRYKGVVDFSGGAYSILKGAVEHEREMEGGSS------AGGR-------DLQLREREKAVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALECIG---EEVFRGERGSASAAMRTASRQQDLFLRRPPAEG 896
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D8LD08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD08_ECTSI) HSP 1 Score: 476 bits (1225), Expect = 3.880e-152 Identity = 266/610 (43.61%), Postives = 371/610 (60.82%), Query Frame = 1
Query: 598 LARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGI----E*PCTERDEDDAKNMVNV---SGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTEEQKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETKSRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRSLDDYPGEQSPYIGPLDAVGGAMPQKRFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYNIHRAATTQSRAIHGKYKGQVDFKGGAYGILKGAVERELE 2406
L +ANMRRLS L F N SV D HTLPV+AT EGD GH+ A +LR F+S EGSL KLN L G+ D++D K MV + G+ HG+Y +HINH + +LQY+YRLNRP+SLHE + PLC ER+V +HF W +NE ++ + + + +K T AMRFSLE EVLP + PTM ++SRD ++ G D S++ + AK ++ ++ + + G Q T + +Y L KR +A E G G A K +KG+VP + + L ++ LF+G+Y NGMK ++DA+ +ID TC GKGGWCY IL +A+ + N K+A EQL+G +Q+ + +V+ L+E+ +T K FELAS A D F+S LRNQGF++R A V + +S+N GR+VA LPGK+K G AAQEHVID D G+WYA+ V+GR F+RS S +IGP+D G M +RF IL K+G+AYL EN++ +RT + ++V+AEC LG+RMDDP+I DFASSI++S MQ Y+ HRA QSR + Y+G +DF GGAYG+++G+ +R LE
Sbjct: 18 LEGIANMRRLSILVFANASVEDTVHTLPVKATEEGDAGHEEATALRAFASSEGSLSKLNFLGGLGGADNISAALVDDNDKKLMVRMVARKGESVHGAYPSHINHVVHLLQYTYRLNRPISLHEGYHPLCAAEREVLREHFGCWDDNEDDQDDYTISLVSTNFSGDK-TFAMRFSLESSNEVLPVMPPTMIGVLSRDPDKYGTKLDTSSYVDTFSKVAKAFDVLKIVMDQNAVDNQGGGGQ--TDAAIERMYAQIKYLLHDKRLQAGALEGKISGLTGVATKTKKGRVPLVTFSNEHNLRALKLLFKGLYVNGMKPLMDAIAEIDATCAGKGGWCYDILRAAEFPATNTKKKAVVTVEQLEGNAKQRLLVMKMVEALKEKGVTRKHFELASVCASVRDVFTSYPLRNQGFYYRRATHLHVNGQNESKNPGRVVARLPGKSKVSKHGNGSGDGAAQEHVIDVDTGDWYAIPNVVGRAFHRSFSGDNSIASQFIGPMDKKGNDMKPERFKGILKKIGQAYLSSENMSVTSMRTVVVTLVMAECTALGIRMDDPIIKDFASSILSST--MQKHYDAHRATIRQSRRVQRGYEGTIDFSGGAYGVVEGSEKRRLE 622
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 276 bits (706), Expect = 9.220e-75 Identity = 224/724 (30.94%), Postives = 343/724 (47.38%), Query Frame = 1
Query: 205 KKWYNLNSKYNPVDIGVVLDETCVKIDGVVYTVGSVEDGWYSL----NVSDFEIEQWELLESRCGDDGGAHDSLVTLEEDLKRYIRSLINDHEALWRSFVPYLRNGQKP-KRGVAKIRTDTVLKDVSKGSAKVRGYLAR---VANMRRLSKLAFVNTSVADCFHTLPVRATC-EGDDGHDAAKSLRDFSSEEGSLCKLNGLDGIE*PCTERDEDDAKNMVNVS-----GKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTE-EQKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETK---------SRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRS----LDDYPGEQSPYIGPLDAVGGAMPQK-RFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYN 2289
K+ YN+ SK NP DIG+++ ET VK+DGV YTV SVEDG YSL + E+ QWE+LE+R D G H TLEED +++ SLI + +W + VPYL +GQ G +++ + ++ S + G AR V R L+K A + D L EGDD LR F+ EGSL +LNGL + ++ D K ++N+ G + G + INH LRV QY+YRL RP S+HE + PLC E S+ F W+E++ + + E M+ A RF++ R + + P L P +I SRD E+ G + D S H K ++ +I+ G + M K +++ +T + + D ++ G ++G + +KGK+P ++ E ++ + E + +NG + +D ID GK GWC+ I+ + + S G ++KK+ID +V+ L++ + +DFE A A A++ A LR+Q F + + SE K RN+ R+ PGK K +E V D C EW V++VIG FY L+D G + G M K F+ ++ K+G +LGVENLT + LRT + S+ + G ++D + A S+ T VKM+ YN
Sbjct: 179 KESYNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHD-GQGH---ATLEEDQRKFAISLILQYGNMWLTMVPYLNHGQAAIPEGEGRVQVSNMTYKMTDVSGE--GLAARHEDVMTARSLTKAALKKLKMVDAIDGLRFPGLAQEGDD------DLRTFAEREGSLGELNGLQKL---LGDKSGLDKKILLNIRSRYPPGMKPTGDFKAVINHMLRVQQYAYRLGRPASIHEGYHPLCDKEVTALSKFFRGWEEDDDDSG----QCLGTSSTSENMSWATRFAVRRSSMIYPDLFPASLEIESRDTEKHGSVVDSSKHVNVYTKTRKAKHVIKWIL---QNGGVCDNMDKKIDTAVAIFELTKSTVTDARAKKKDYDDTTTG-SQGDSNTLKKGKLPLLLLDPLKSEECLRLMTEALTKNGWGYLRGQIDLIDPMAWGKNGWCWEIVVDGFKDATDKSNPPATGHAHFGGRNGKEKKRIDRMVEKLKDAGVELRDFEAAWGATSVLSAYNGACLRDQFHRFLKKRTAHIRSENKVTGRRGLGDGRNVDRVTMWPPGKGKTGK---------CKERVFDPLCSEWLTVLLVIGWAFYDKEGVVLEDEMG--------IPNSNGKMKLKGSFDVVMKKVGSTFLGVENLTLHNLRTVVSSLAVKYFYGKGYNLNDAPLLQLAESMDTGVKMLVGPYN 862
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D7G514_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G514_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 8.440e-20 Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 598 LARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGI----E*PCTERDEDDAKNMVNV---SGKEKHGSYMNHINHALRVLQYS 912
L VA MRRLS+LAF N S+ D H LPV+AT EGD GH+ A +LR F+S EGSL KLN L GI E D++D M+ + GK HG+Y +HINHA+ +LQY+
Sbjct: 31 LGGVATMRRLSRLAFANASMEDTVHALPVKATAEGDAGHEEAIALRAFASSEGSLSKLNFLGGIGGADETSDALVDDNDTALMIRMVTRKGKSVHGAYPSHINHAVHLLQYT 142 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17051.1 >prot_C-linearis_contig96.17051.1 ID=prot_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=641bp MVNVSGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVback to top mRNA from alignment at C-linearis_contig96:535823..539256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17051.1 ID=mRNA_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3434bp|location=Sequence derived from alignment at C-linearis_contig96:535823..539256+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:535823..539256+ >mRNA_C-linearis_contig96.17051.1 ID=mRNA_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3846bp|location=Sequence derived from alignment at C-linearis_contig96:535823..539256+ (Chordaria linearis ClinC8C monoicous)back to top |