mRNA_C-linearis_contig96.17047.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17047.1
Unique NamemRNA_C-linearis_contig96.17047.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig96.17047.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 4.130e-78
Identity = 147/202 (72.77%), Postives = 170/202 (84.16%), Query Frame = 1 
Query:  337 LAEAARCIEAQTPWYETL---YEEVADGGGDLAVDTILTFSVMSSLIEATNETVLAPVFVALKGLLGAVQGAAAAREEIVELIRYCVGISRCLLEAAKVEHMPRSIVVSLEEFKGEIEAMERFV--YGTRPSGCC-RRMVLSSYDRDTAAGHKRKLKGLLDAVLAGLAVQTNQAINELEDMIRARDPPPLAAMALIPREAPI 924
            LAEAAR +EA+TPW+E L   Y++VADGGGDL V+TIL F+V S LI A NETVLAPVFV LKGLLGAVQGAAAAREEIVEL RYCV +SRCLL+AAK + MP +I  +LEEFKGE+EA+ RFV  YGTR SGCC RRMVL+++DRDTAAGHKRKLK LLDAVLAGLA QTNQ +N+++ MI ARDPP L A+A IPREAP+
Sbjct:   40 LAEAARRMEAETPWFEKLGLRYQDVADGGGDLTVETILAFNVASGLINAANETVLAPVFVVLKGLLGAVQGAAAAREEIVELARYCVAMSRCLLDAAKADVMPETIKSTLEEFKGEMEAVGRFVQTYGTRSSGCCWRRMVLNAHDRDTAAGHKRKLKDLLDAVLAGLAAQTNQGLNQIKGMILARDPPSLGALAEIPREAPV 241
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH19_ECTSI4.130e-7872.77NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:493989..496687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.1
Seed ortholog evalue1.4e-70
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons3
Model size1375
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17047.1prot_C-linearis_contig96.17047.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 494389..496528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.0110855-UTR-C-linearis_contig96:493988..4943881622930826.0110855-UTR-C-linearis_contig96:493988..494388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 493989..494388 -
1690881269.767395-UTR-C-linearis_contig96:493988..4943881690881269.767395-UTR-C-linearis_contig96:493988..494388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 493989..494388 -
1622930826.0609639-UTR-C-linearis_contig96:496528..4966871622930826.0609639-UTR-C-linearis_contig96:496528..496687Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 496529..496687 -
1690881269.8212273-UTR-C-linearis_contig96:496528..4966871690881269.8212273-UTR-C-linearis_contig96:496528..496687Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 496529..496687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.0253015-CDS-C-linearis_contig96:494388..4950301622930826.0253015-CDS-C-linearis_contig96:494388..495030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 494389..495030 -
1690881269.7828875-CDS-C-linearis_contig96:494388..4950301690881269.7828875-CDS-C-linearis_contig96:494388..495030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 494389..495030 -
1622930826.0380216-CDS-C-linearis_contig96:495448..4955501622930826.0380216-CDS-C-linearis_contig96:495448..495550Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 495449..495550 -
1690881269.7966552-CDS-C-linearis_contig96:495448..4955501690881269.7966552-CDS-C-linearis_contig96:495448..495550Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 495449..495550 -
1622930826.0496798-CDS-C-linearis_contig96:496456..4965281622930826.0496798-CDS-C-linearis_contig96:496456..496528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 496457..496528 -
1690881269.80739-CDS-C-linearis_contig96:496456..4965281690881269.80739-CDS-C-linearis_contig96:496456..496528Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 496457..496528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17047.1

>prot_C-linearis_contig96.17047.1 ID=prot_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=272bp
MPHSSAAAASPAPAATVGQRSSQQQCWLKQQPVEERRSVRRARRGTSPTG
MAFTTILRLLAEAARCIEAQTPWYETLYEEVADGGGDLAVDTILTFSVMS
SLIEATNETVLAPVFVALKGLLGAVQGAAAAREEIVELIRYCVGISRCLL
EAAKVEHMPRSIVVSLEEFKGEIEAMERFVYGTRPSGCCRRMVLSSYDRD
TAAGHKRKLKGLLDAVLAGLAVQTNQAINELEDMIRARDPPPLAAMALIP
REAPISCPRPTCKGPECLREW*
back to top

mRNA from alignment at C-linearis_contig96:493989..496687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17047.1 ID=mRNA_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2699bp|location=Sequence derived from alignment at C-linearis_contig96:493989..496687- (Chordaria linearis ClinC8C monoicous)
TCGATCACAGGAGAAGGCAAGGTTGCAGCAAGCCAGCTCAGAGCTCCTAC
CGCGACATCGAACAGGCTATGTTCGACGGTGGTGTTGTTGACAAAGACAA
TACGCCGCCAACTCGAACTCAGCAGGTGGTGACCTCGGCTGCGGGATAGT
CCAACTGCCATGCCGCACTCTTCCGCCGCCGCTGCTTCTCCGGCACCAGC
AGCTACCGTGGGCCAGCGGAGCTCACAACAGGTGACACCCGGGTAGCCGC
GCTGCAATACCTCGCTCGAAAGCTCGAGAGCTCGAGAGCTCCTAACAACA
ACCAACCCTTATTTATTAGGGCCATTTTTTATCGAACAAGTTTTTTCGTT
TTTTCACGGATTCGTGAATTCGGGAAATTATACTCCGTATTATTTTCCTC
GAATCCGAGGAAAACAGGGCTGCCTACGCACAGAAAGTAAGATTATATAG
GAAATAGACCCTAACCCCAACCACCGACCCCAATCTAGCCGGTTCCATAC
TTTATCCCATATGTTTTGTTACTCACAAACCTGCGTAGGCTACTGGGAAA
ACAAGGGCGGCGAAAAAAACGCGGCTGTTCACCTCACGAATCCGAGGAAA
CAGAGGAGGGATCGGGCAGACGCGGTAGGAGGGCTGATCTTACGCACAAA
AGTGTGCAAAACTTGTCCCAACCCCTCAGAGGGTCAGTCACAGGCCGCTA
CCAACAAAAAAAATGTCACGAGTCGATGGTTTTGCTGTTGTTGTGGGATG
AGTTGCTCTGTGCCCGCCAAAGCGACCCAAAGTCCAACACGATGATCAAC
TTCACGATATCACCTATAATGGGGCATGCCAGAGGATAATTCCTTCTGTC
GGAAACAGCTAGCCTATCGTACTATCGGCGAATAGTGTGCAACCAGTTGC
TTGAGTCCTTCGGTGAGGCTAGACGAGAGGGTAGTCGCAATAGCAGAGGA
CCTGAGGGGATACAGGTATGCGATAAGAATGCGGCGGAATTTTTCACGAA
TCCGTGGATTTCCTAAAAGCCCCCTGTCTACATACGTATACTTGGTAATG
TATTCTTCTCTACAATACGTACTCCCCACTAACATTCTCCCTGCACAAAC
GCTTGTGTGTGTGGGTCTACCAATCCTCGGGGTTCAGCAATGCTGGCTGA
AGCAGCAGCCAGTAGAGGAACGCCGGTCGGTTCGCAGAGCGAGGAGAGGA
ACATCTCCAACGGGGATGGCGTTTACGACCATTTTGAGAGTACGTACAAG
GAGTGTTTTGCAGTATTTCCCAAAATGGCATCACTGCGTCCATGGTCCAG
GCCGTGCTACCATATCAAGCCGGCCACCGTATGTGAAGCCTTTCCGTAAC
CCTGATTGCAGTGGAGCTGTAGGTGGAAAACCTACTCTATTTGAGCAGGA
GACGTTAGTACTGCTGTAGCATACTCCGAGTACACACTACCGCACGATGT
TCTGTCCGCGTCACTGCTTTGTTGAACATGCTTCAGGGTGAACGATCAGT
TTTGGTCTGGCAGGGTATGACCTACTGCTGTGTGAAGTACTTCATCCGGG
AGCAGGAAAGGTGGAGCCGCCTTGATGCGATGTTACCCCTGAAAAGCCAT
CTCGTGTCGACCACTTGACAACACATTCCGGCCCCTCTCTTTTGGTGTGT
GGTGCAGCTGCTTGCGGAAGCTGCTCGGTGTATCGAAGCCCAAACGCCGT
GGTACGAGACGCTGTACGAGGAAGTGGCAGACGGGGGCGGGGATTTGGCC
GTCGACACCATCCTCACTTTCAGCGTCATGAGCAGCCTGATCGAAGCCAC
CAACGAGACCGTGCTGGCTCCCGTGTTCGTCGCTCTGAAGGGACTACTGG
GCGCCGTCCAGGGAGCTGCGGCGGCTCGAGAAGAGATTGTGGAGCTTATC
CGGTACTGCGTGGGTATCTCGAGATGCCTGCTCGAGGCGGCGAAGGTGGA
GCACATGCCCAGATCGATCGTGGTATCGCTTGAAGAGTTCAAGGGCGAAA
TCGAGGCGATGGAAAGGTTCGTCTATGGCACCCGACCGAGTGGTTGCTGC
AGAAGGATGGTCCTCAGCTCTTACGATCGCGACACCGCTGCGGGCCACAA
GCGCAAGTTGAAAGGTTTGCTAGATGCGGTGCTGGCCGGTCTCGCTGTCC
AGACCAACCAAGCGATTAACGAGCTTGAGGACATGATTCGTGCTAGGGAC
CCCCCACCTCTAGCTGCGATGGCACTGATTCCTCGCGAAGCACCTATATC
GTGCCCGCGACCTACGTGCAAAGGGCCGGAATGTTTGAGGGAATGGTAGC
TGACCTCACAAACTCCGAACGTGCAGCATCCGCCGCACACTGTCTGCTGG
GGATGGGGGGAGGGGGAAATACTCTCACGGTTTCGTCGGTGGTGCGAGAT
GACCGCGTGCGGATCAGCTTCAAGAATGGCATATTTTGGTGTGTACCTTA
GGGTTGTCCTCGCTCCCCGCAAATGCCAATGTTTTGTGTTGTCAACCGGT
CAAAAAGTGGTGCTACGCGCGTTTGGACAGGCGTAGGGGAAAATGACTTT
CCGCCGTAGATACCCAAATCGGGTACCGGGAATGTAGACTTGTGCTACGA
ACGAGTTGGCTCGCGAGAAGGCACTCACAGCTTGGTGCCTAGTATCCTTC
AACTGAAATCTCTGCCAGGGGTACCATGAGCGTGATCTGAAATCGGAAC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig96:493989..496687-

>mRNA_C-linearis_contig96.17047.1 ID=mRNA_C-linearis_contig96.17047.1|Name=mRNA_C-linearis_contig96.17047.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at C-linearis_contig96:493989..496687- (Chordaria linearis ClinC8C monoicous)
ATGCCGCACTCTTCCGCCGCCGCTGCTTCTCCGGCACCAGCAGCTACCGT
GGGCCAGCGGAGCTCACAACAGATGCCGCACTCTTCCGCCGCCGCTGCTT
CTCCGGCACCAGCAGCTACCGTGGGCCAGCGGAGCTCACAACAGCAATGC
TGGCTGAAGCAGCAGCCAGTAGAGGAACGCCGGTCGGTTCGCAGAGCGAG
GAGAGGAACATCTCCAACGGGGATGGCGTTTACGACCATTTTGAGACAAT
GCTGGCTGAAGCAGCAGCCAGTAGAGGAACGCCGGTCGGTTCGCAGAGCG
AGGAGAGGAACATCTCCAACGGGGATGGCGTTTACGACCATTTTGAGACT
GCTTGCGGAAGCTGCTCGGTGTATCGAAGCCCAAACGCCGTGGTACGAGA
CGCTGTACGAGGAAGTGGCAGACGGGGGCGGGGATTTGGCCGTCGACACC
ATCCTCACTTTCAGCGTCATGAGCAGCCTGATCGAAGCCACCAACGAGAC
CGTGCTGGCTCCCGTGTTCGTCGCTCTGAAGGGACTACTGGGCGCCGTCC
AGGGAGCTGCGGCGGCTCGAGAAGAGATTGTGGAGCTTATCCGGTACTGC
GTGGGTATCTCGAGATGCCTGCTCGAGGCGGCGAAGGTGGAGCACATGCC
CAGATCGATCGTGGTATCGCTTGAAGAGTTCAAGGGCGAAATCGAGGCGA
TGGAAAGGTTCGTCTATGGCACCCGACCGAGTGGTTGCTGCAGAAGGATG
GTCCTCAGCTCTTACGATCGCGACACCGCTGCGGGCCACAAGCGCAAGTT
GAAAGGTTTGCTAGATGCGGTGCTGGCCGGTCTCGCTGTCCAGACCAACC
AAGCGATTAACGAGCTTGAGGACATGATTCGTGCTAGGGACCCCCCACCT
CTAGCTGCGATGGCACTGATTCCTCGCGAAGCACCTATATCGTGCCCGCG
ACCTACGTGCAAAGGGCCGGAATGTTTGAGGGAATGGTAGCTGCTTGCGG
AAGCTGCTCGGTGTATCGAAGCCCAAACGCCGTGGTACGAGACGCTGTAC
GAGGAAGTGGCAGACGGGGGCGGGGATTTGGCCGTCGACACCATCCTCAC
TTTCAGCGTCATGAGCAGCCTGATCGAAGCCACCAACGAGACCGTGCTGG
CTCCCGTGTTCGTCGCTCTGAAGGGACTACTGGGCGCCGTCCAGGGAGCT
GCGGCGGCTCGAGAAGAGATTGTGGAGCTTATCCGGTACTGCGTGGGTAT
CTCGAGATGCCTGCTCGAGGCGGCGAAGGTGGAGCACATGCCCAGATCGA
TCGTGGTATCGCTTGAAGAGTTCAAGGGCGAAATCGAGGCGATGGAAAGG
TTCGTCTATGGCACCCGACCGAGTGGTTGCTGCAGAAGGATGGTCCTCAG
CTCTTACGATCGCGACACCGCTGCGGGCCACAAGCGCAAGTTGAAAGGTT
TGCTAGATGCGGTGCTGGCCGGTCTCGCTGTCCAGACCAACCAAGCGATT
AACGAGCTTGAGGACATGATTCGTGCTAGGGACCCCCCACCTCTAGCTGC
GATGGCACTGATTCCTCGCGAAGCACCTATATCGTGCCCGCGACCTACGT
GCAAAGGGCCGGAATGTTTGAGGGAATGGTAG
back to top