prot_C-linearis_contig96.17046.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17046.1
Unique Nameprot_C-linearis_contig96.17046.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length204
Homology
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BLAST of mRNA_C-linearis_contig96.17046.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.460e-13
Identity = 56/116 (48.28%), Postives = 68/116 (58.62%), Query Frame = 0 
Query:   91 RVARRRRLLER---YPESRKWRAQGWLIMMRARHQKLLPNREVRMARWSRHRGRTRKLALFDEAAIVKVIKAEAKPDPSDGDLEAGKSERRKFVRAVVTVVKMEEEGLFRHVTAFL 203
            R A R R +ER   +P  R+W A GWLIM+RARHQ+ L     R   W     R RKL  F+EA IV  I  E +       LEAG+S R  FVRAV  VV++ EEGLFRH+ +FL
Sbjct:  193 RQAARERAVERLRTFPGQRRWHAGGWLIMIRARHQRFL----ARPKGWP---IRLRKLERFNEANIVHKIPPELEL------LEAGRS-RMNFVRAVTAVVEINEEGLFRHIISFL 294
[Close]
BLAST of mRNA_C-linearis_contig96.17046.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.780e-8
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 0 
Query:  116 MMRARHQKLLPNREVRMARWSRHRGRTRKLALFDEAAIVKVIKAE---AKPDPSDGDLEAGKSERRKFVRAVVTVVKMEEEGLFRHVTAFL 203
            MMRARH++   +   R   W   R R RKL  +DEA+I+K    +    +  P    LEAG+  +  FVRAV+ VV+++EEGLFRH+ ++L
Sbjct:    1 MMRARHER---SSSARSKGW---RARLRKLERYDEASIIKYAMRDFMGGQTPPEIELLEAGRL-KMNFVRAVIAVVEIQEEGLFRHIMSYL 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17046.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FME9_ECTSI4.460e-1348.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI5.780e-841.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..203
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..53
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:491690..493888 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17046.1mRNA_C-linearis_contig96.17046.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 482135..493908 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17046.1 ID=prot_C-linearis_contig96.17046.1|Name=mRNA_C-linearis_contig96.17046.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp
MGDSGCSGTNCEEDGSTASQMLTVYFNVWGILAFGGLFYVLPDCDRPGRA
RSDAIQTFVSILCLGGAWPLVACFPCMICWKEWSERERRQRVARRRRLLE
RYPESRKWRAQGWLIMMRARHQKLLPNREVRMARWSRHRGRTRKLALFDE
AAIVKVIKAEAKPDPSDGDLEAGKSERRKFVRAVVTVVKMEEEGLFRHVT
AFL*
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