prot_C-linearis_contig96.17043.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17043.1
Unique Nameprot_C-linearis_contig96.17043.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length140
Homology
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BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 7.150e-51
Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 0 
Query:    1 MSGSSLWRERRAGVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGG 135
            MSGS     +  GV  AV+  + AVA   A   KW S    RRMLGNIASGR+FID LS  VA+LEA ++LAAE +DL+TAR+EHERKSRE+DE VTQVLTHLDKC GGGEI VARKKQ+HRAEALG+RIS ILPGG
Sbjct:    1 MSGSL---GQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGG 134
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BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.150e-51
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 0 
Query:   13 GVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAE 138
            GV  AV+C + AVA   A   KW S    RRMLGNIASGR+F+DALS  VA+LEA ++LAAE +DL+TAR+E+ERKSRE+DE VTQVLTHLDKC GG EIGVARKKQ+HRAE LG+RISKILPGG  +
Sbjct:   10 GVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVD 137
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT5_9PHAE7.150e-5167.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4A6_ECTSI7.150e-5168.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
IPR036533BAG domain superfamilyGENE3D1.20.58.120coord: 31..130
e-value: 3.1E-5
score: 25.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:444151..448010 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17043.1mRNA_C-linearis_contig96.17043.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 444056..449491 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17043.1 ID=prot_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=140bp
MSGSSLWRERRAGVTVAVLCCIGAVAYVGAAKWNSRRPTRRMLGNIASGR
DFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTH
LDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036533BAG_dom_sf