mRNA_C-linearis_contig96.17043.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17043.1
Unique NamemRNA_C-linearis_contig96.17043.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.460e-45
Identity = 88/128 (68.75%), Postives = 103/128 (80.47%), Query Frame = 3 
Query:  132 GVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAE 509
            GV  AV+C + AVA   A   KW S    RRMLGNIASGR+F+DALS  VA+LEA ++LAAE +DL+TAR+E+ERKSRE+DE VTQVLTHLDKC GG EIGVARKKQ+HRAE LG+RISKILPGG  +
Sbjct:   10 GVIAAVVCGLVAVAGTTAVARKWKSGGTKRRMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVD 137
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BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.800e-45
Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 3 
Query:   96 MSGSSLWRERRAGVTVAVLCCIGAVAYVGAA--KWNSRRPTRRMLGNIASGRDFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTHLDKCVGGGEIGVARKKQVHRAEALGVRISKILPGG 500
            MSGS     +  GV  AV+  + AVA   A   KW S    RRMLGNIASGR+FID LS  VA+LEA ++LAAE +DL+TAR+EHERKSRE+DE VTQVLTHLDKC GGGEI VARKKQ+HRAEALG+RIS ILPGG
Sbjct:    1 MSGSL---GQHTGVIAAVVFALVAVAATTAVARKWKSGGSKRRMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGG 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4A6_ECTSI3.460e-4568.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHT5_9PHAE4.800e-4567.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:444056..449491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001960.1
Exons5
Model size1980
Cds size420
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.2390134-UTR-C-linearis_contig96:444055..4441501622930825.2390134-UTR-C-linearis_contig96:444055..444150Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 444056..444150 +
1690881269.3580954-UTR-C-linearis_contig96:444055..4441501690881269.3580954-UTR-C-linearis_contig96:444055..444150Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 444056..444150 +
1622930825.3418188-UTR-C-linearis_contig96:448010..4480701622930825.3418188-UTR-C-linearis_contig96:448010..448070Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 448011..448070 +
1690881269.409433-UTR-C-linearis_contig96:448010..4480701690881269.409433-UTR-C-linearis_contig96:448010..448070Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 448011..448070 +
1622930825.3613527-UTR-C-linearis_contig96:448086..4494911622930825.3613527-UTR-C-linearis_contig96:448086..449491Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 448087..449491 +
1690881269.4220471-UTR-C-linearis_contig96:448086..4494911690881269.4220471-UTR-C-linearis_contig96:448086..449491Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 448087..449491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.259226-CDS-C-linearis_contig96:444150..4442821622930825.259226-CDS-C-linearis_contig96:444150..444282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 444151..444282 +
1690881269.3680983-CDS-C-linearis_contig96:444150..4442821690881269.3680983-CDS-C-linearis_contig96:444150..444282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 444151..444282 +
1622930825.2759135-CDS-C-linearis_contig96:446197..4463111622930825.2759135-CDS-C-linearis_contig96:446197..446311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 446198..446311 +
1690881269.3779554-CDS-C-linearis_contig96:446197..4463111690881269.3779554-CDS-C-linearis_contig96:446197..446311Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 446198..446311 +
1622930825.2930605-CDS-C-linearis_contig96:446854..4469591622930825.2930605-CDS-C-linearis_contig96:446854..446959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 446855..446959 +
1690881269.3882139-CDS-C-linearis_contig96:446854..4469591690881269.3882139-CDS-C-linearis_contig96:446854..446959Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 446855..446959 +
1622930825.319051-CDS-C-linearis_contig96:447941..4480101622930825.319051-CDS-C-linearis_contig96:447941..448010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 447942..448010 +
1690881269.3990002-CDS-C-linearis_contig96:447941..4480101690881269.3990002-CDS-C-linearis_contig96:447941..448010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 447942..448010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17043.1prot_C-linearis_contig96.17043.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 444151..448010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17043.1

>prot_C-linearis_contig96.17043.1 ID=prot_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=140bp
MSGSSLWRERRAGVTVAVLCCIGAVAYVGAAKWNSRRPTRRMLGNIASGR
DFIDALSTGVAELEAKVSLAAEGTDLETAREEHERKSREYDEQVTQVLTH
LDKCVGGGEIGVARKKQVHRAEALGVRISKILPGGTAED*
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mRNA from alignment at C-linearis_contig96:444056..449491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5436bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous)
CACAGACACACAGGGCTCTTCGTGCGTTCGGGGGGAGAGGCCTCCCTCTT
GGGGTGTATCGCGTCTCAGCGTCGGTGAGCGGGCGAGAGAGCACGATGAG
CGGGTCCAGCCTTTGGAGGGAGCGGCGGGCGGGCGTCACTGTTGCGGTCC
TGTGTTGCATCGGTGCCGTCGCGTACGTCGGGGCTGCCAAGTGGAACAGC
AGACGGCCGACGAGACGGATGCTTGGGGTGAGTTGAGCGCGCGTGGAGTA
TATGGGCATGGACCGCACTCCCTTGGTCGTCGGCCCAGCTTTGCTTTGTC
CGCTTGCTGCGTTGATGTGGCGCGTACGAGCACCGGTGGTGCGGAACCTG
CTGCTGTACGTGCACACGGCACGTGCAGCGCTGCAGCACTCCTGGGTTCC
AAAACACGATGTGTGGAGATGCGGCGGCTAGATGAGTGGCACCATTGTTT
GGATTTTCGATCCATTGGAACATGCATGACCCATCCACCTCGCATATCTT
TGGCCTGGGGTGAGGTTCGACATCGATGTCGGTTGACAACGCTCACATCA
ACAGAGTAGATCGAAGTTTAAGTTTGGAGTGTAGTCTAAACATCCCACCC
ACAACACAACCAGGAGTTACAGCAGTAGGAGTTCGGAGTTTCCGTCATAC
GGCGATAGCATCGCATCATGCTATAGTGCTATCCACCAAGTGGATCTTGA
TGGTGCTCGCTTGAATACAGTGTGTCCCGCTCCACACTATAGTGAAGACA
CGCACTTGCAGTATTGTACCGGCGAATTTCAAACCCGAAAATACACAGTG
ATGTGAAAAACTGCTAACCGGTTATAACCGGTTCTCACTTTCGCGGTAAG
TTACATGGAAATTCCCGGTTATTTTCTCAGTTTTTTCTTTTCCTTCTTTA
TTTTTTATTTTTTTGCTTGATTTTTATTTTTTGCCACACGCATTTGCGTG
CGATCTGCGATCTGTGGGGGGAGTCAGTACAGTAGCACAATAATAGTCTA
TTAATAGTGCTTATTTCTTATTTTTTCGAAGCGTTTAGTCTTCGTTATTT
TCTACGGTACAACTTAGGACACTAAATGATCAAGACTCATGAACCATTAA
GCATGTTTATTTTTTATTTTTTGGTCTCCGGAGGTACGATGTATCACAAC
CAAAATTAGCATTCATTGTAACATTGTAACAGGGCAGAGAGCATACGCGA
TAAACATATATATATACGAAGTACAGCAGCAACAGCACAGCAGTGACAGC
ACCCAGAGAACCGCAATATCATACAGCAATACAGCACGTCTCGAGAGCTC
GAGAGCCTTTTCAAACGAACGCTATTACGTTGTTTAACACCCCGGGGATG
GGTCGTTTTCGTCCCCGGTAGGCGCGGTTATAACCGGTAAGTTACATGGC
TGAACCGCGGTTTTTCACATCCCTGAAAATACCAGCATCCGGGGGCCCCG
TGATATAACTCGCGGTTTTTCTTTGTTGCTGTTCACGCCTTTTTACTTGG
GCGTGTCAACACATTCCTCCCGAGGGACCGTGAGAGCATCTGCCGGGTAC
TCCCATGCCAGCAAGCCCCCCTCACAAACATTTCACAATCTTCATCTGCG
AGCCCTCTCTGCTCCCAAGATTGGACATCATGGAACATAAAAAAGGCAAA
AAATGCGGCGGCGAAGTCTTGGGGCTAGTTCTGCTATTTTCGCTGCACGC
CACATGAATTGAGGCTCATTCTACATACGAGCGGACCTGGCGGTAGCTTC
TCCGTTCAAAGACCTTTTAGTGCTGCTGCTGCTGCTGGTAGCGTGACAGC
GTCCCTGTAGTAAATAGGCCGATGTTTTGCCACATGGAAAAGAGGTGTTG
TGATTTTTCGGGCCACATTGGGGACAACAAAGGTCGAAACACTATTGGCG
ATGCATGTCTTGCCCTGCTGGAGAGAAGGAAGGGTATTCCTTTACAAACC
GCCACTCTGTGCGTGACAACATGTACCGGTATGTATCTACCTACCAAACA
GGAACGTGTTTTCGCATGCTGCGTGGTTGCTACCCAGAACTCATTGCCGA
CGGTAGATACCTTGCGGTTCTATCCCCACAGCAGTGCCTCCTGAAACCCG
CCACCGGTCAATGCACCCGTCCATCTTCATGTCCCACCTCAGAACATCGC
TAGCGGGCGCGATTTCATCGACGCACTGTCGACAGGGGTGGCGGAGCTGG
AGGCAAAGGTTTCCCTGGCCGCCGAGGGAACTGACCTGGAAACAGCTCGA
GAAGAGGTATGTGCGCCAGCCGCGTGATTTGCACGAGAAATCGTGATCTT
GCTACAAAATAGTTTTCTCCATATGTAGTCGACCCGAGAGCACCTATTTG
TTGCAATCCATGATAAAGACTTGAACATGACAATGATGGACACTTTTTTT
GGGTCAGATTTCCAACTCCAAGCGTAAGGAAGGCCTGCTGGGACGAGCCC
CGCGGCGATGGCTTTCTTTGAAAACCTCAGCACCGTGTGAAGCCACTTCA
GCTTTTTTGCCTGGATACAAGAGGGGCAGCATATTTGTTGATGGTACTGT
CGACAAGGCACGACCATGCGCAAGGCTGGGTTTAAATCAACGTGTCCACA
CTCCCAATCTCAAGGGCCTCTTATATGCCTTAAAAGTCGTTCACGAGTTT
CAAGTGAGATATTTTGGTCTGGCTGATGACTACGGCGACAGAGTCGATAC
AGCCATGTTATTAATGTTTCCCGCGCCTCTCGACCGCCCACCGCCTTCGC
CACCACGCCTTCCACCTATCGTGCAAACCCTGTCCGCCGGTGCTTGTAGC
ACGAGAGAAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACC
CACCTCGACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAA
GCAGGCGAGGAGCCCCACTTGACTTCACTGCTACGCGTACTTTTGGCCTT
GAAACCGCCCCTTTTCGGAAAGGTTTCTTGCACGCTCCGCCTTTGCGCTC
TACCATCACAGCGGGCCCCATTTTCGCCCAGGCCAGCCCCCCAATGCGCC
GGGGTTATGCGGTCCACGGGGCACAGAGTGCGAATATTTTTGTAAGCTTT
TGGGATCAAGCAAATGTGTTCCTAGGAATCGACAGGCCACAACCATCCGC
CGAGTGGTCGCCCCAGCGACCCATATGCTGGTGTTGATACCGGCGAGGTC
GAGGGGTCAGGGGGGCTGGAGCGTGTGGGTGTTCTGTGTGTCTGCGTGTG
CTCGTTCTGTTAGCCTCAAGCAAGCCTGCAGAAACGTGCAGTGTCCCCCG
GCCAGCATTCTGCAAGAAGTTTCGAGTGGTCTAGGCTGAACAGCAAAGTT
GGTAGGCTAAATTGTAAGCTAAATTAGCCCCGAGGGAGTGGTGACATTCT
CGGCAAAACGCAACTTCCACGTAATTTGTTCAGTCGACTGGGATCCTCGT
CCACGATGCCATCTGCGCAGTCGCTCGTTCCTATCGGCCGCGTAGCTTTT
TATCCTGTCTAGGCGCCATGGTTTCTGCCTTTCAAGTGTAAGCATCACCC
GGACCTTTTCAGTACGTGTCGCTACTTTAGCTGCGCTGAACCACAGCACC
TACCGGTACTTGACCCGTTGTGGAGACATGCTGCATCCTGCAGTCTCGTG
AGTAAGTCGCCCTTGGGTGCAAGCGCTTTCATATGCACCGAGCTTGTGGT
CGGTTCATGCGGCGCACGTTTCTTCTACTGCCTGGAACCCACCCCCTCAA
CCATCTGCTGCTACTACTGCTGCTGCTACTGCTGCTACTGCTGCTACTGC
TGGCGATACCTTGTCTGATATCCGTCGTGTTCGCCTTTACCCTTGCAATT
TGATTTTTGGTGTGGGATGTGGGTTTTGGTTCACAGGTTCACCGAGCGGA
GGCGTTGGGTGTTCGAATTAGCAAGATTCTCCCTGGGGGAACTGCCGAAG
ATTGAAGGAGGGAGACAGAGACTGAAAGAGCCGCAGCCGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGGTAACGCGTGC
TAGAAAGGTTCATGATCGAGGGAAGCAGCAAGGAAAACCAAGCCCATCAA
TATTCGCTTCTAGAGGTTCTCAAGGACCGATTTGCTATTTTTAACGGCTA
CCCGTAGCTTGTCTGTACGCGACAAAGGTGTTTTCAGTACTTGCGTACGC
CTCAGAAATTCCACTGAGAGAAAGCGGCGAGGCCGACCGTCGTCAGTTTC
TAGAGGAATTGAATGTCTCGGCGAAACGCAGAATGCAGGGGAATGGGGCT
TTCGCCTGAAGACCCGCCAGCTGCACCACAGCTAAACACTGGGATGGACG
CCATACGTTGAAGAGAGTATTTAGCAGCTGCAGGAAAATGAAAGCGTCCA
GTAACCTTGGTTTTGTAGTACATGTGTACAAGTCGGGTGTTTGTGAAGTC
AGGACAACGCTGGTTTGGGGTGCAGTCGGCAATGCCACCTCAAAGATTTT
CAGCTTTTGTACGTCTGTTGCTTGTGGCCGCGAGTGTTACTGTTTGAGGC
CTGTTCAGGCGGAATTGTGGGATATCCACGTCGGTCCCCCGTTGTTAGGT
GTGAGTACAACAGTAGTAGTGCTCAATTCAAGGCCGATCGCTGTTGTTGT
AGTGTTCGTTCTGCTCTCGGGTCTTTCGTTCTGGTGTAGTGTTATGCAAG
AAGATTGGTAGACAGTCTAGAGCTCGTTATCATTCTTCTCTATTTCGTGA
CATGCTGTCGCGTCGCCCTTCTGTTTTGGCGTTATTGTAAGGCGACGTTA
TTGTAAGGCGGCGTTACTGTAGGGCGGCGTTATTGTAAGGCGGCGTTGTT
GTAAGGCGAAGCCTCTTAATTGTTGCTCCGAGCGACGCAACGCAACCTTT
GGTGTTACCATATCATCCCACGCTTTGTTCCGACGGTGATCGGAAGGACG
GGGTCGTGCAAGTGTGTGCTCTTCACTTTGGAGCGGGCCAAGATTGAGCG
ATATAGCCGACGCCATCCAAGTCAAGTTCCTGTCTTTTCTTCTGCGAATT
TTTCTCTCTGCAGGTTCTCATTGTTCTTGTTCTGTTATATTTCTACTCCG
TCGGTTTCCGTCGTGAGTGAAAAGCCGGGTTCATCTTTCGGCGTGCCCCC
GAACATGCACGGTTGTTCTGTATGTGTGTGGTATGTGGTATATTTGAGGC
TTCCGAGACGAAATGTATATGGAGTATGAAGGTGCTTCGTGTAGTGGTGG
ACGGCTGGCACGCGGGAGAGCTTGTTACAGTAGTTATATATTTCTTGTCT
CCCGCTGTTTGGTAATGCAGAGCTGTGTGCGTAATCGAGCTCGAAGTAAT
TGGACCAGAAACCGTGAAGGTTATGCTTGAGAATGTACTTCGTATGTAGT
ATGTCGCACCAGCAGCCATTCGGCTCTACTCCCGTG
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Coding sequence (CDS) from alignment at C-linearis_contig96:444056..449491+

>mRNA_C-linearis_contig96.17043.1 ID=mRNA_C-linearis_contig96.17043.1|Name=mRNA_C-linearis_contig96.17043.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at C-linearis_contig96:444056..449491+ (Chordaria linearis ClinC8C monoicous)
ATGAGCGGGTCCAGCCTTTGGAGGGAGCGGCGGGCGGGCGTCACTGTTGC
GGTCCTGTGTTGCATCGGTGCCGTCGCGTACGTCGGGGCTGCCAAGTGGA
ACAGCAGACGGCCGACGAGACGGATGCTTGGGATGAGCGGGTCCAGCCTT
TGGAGGGAGCGGCGGGCGGGCGTCACTGTTGCGGTCCTGTGTTGCATCGG
TGCCGTCGCGTACGTCGGGGCTGCCAAGTGGAACAGCAGACGGCCGACGA
GACGGATGCTTGGGAACATCGCTAGCGGGCGCGATTTCATCGACGCACTG
TCGACAGGGGTGGCGGAGCTGGAGGCAAAGGTTTCCCTGGCCGCCGAGGG
AACTGACCTGGAAACAGCTCGAGAAGAGAACATCGCTAGCGGGCGCGATT
TCATCGACGCACTGTCGACAGGGGTGGCGGAGCTGGAGGCAAAGGTTTCC
CTGGCCGCCGAGGGAACTGACCTGGAAACAGCTCGAGAAGAGCACGAGAG
AAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACCCACCTCG
ACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAAGCAGCAC
GAGAGAAAAAGCAGGGAGTACGACGAGCAGGTGACCCAGGTCTTGACCCA
CCTCGACAAGTGCGTAGGAGGCGGCGAGATAGGCGTCGCCCGCAAAAAGC
AGGTTCACCGAGCGGAGGCGTTGGGTGTTCGAATTAGCAAGATTCTCCCT
GGGGGAACTGCCGAAGATTGAGTTCACCGAGCGGAGGCGTTGGGTGTTCG
AATTAGCAAGATTCTCCCTGGGGGAACTGCCGAAGATTGA
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