mRNA_C-linearis_contig96.17042.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17042.1
Unique NamemRNA_C-linearis_contig96.17042.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Match: D7G4C0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.270e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK 108
            MGPCMEDLTYKSTERLLF PSL+TS APVC  AAL+
Sbjct:    1 MGPCMEDLTYKSTERLLFDPSLRTSHAPVCHRAALE 36
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BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Match: D7G4A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.460e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK 108
            MGPCMEDLTYKSTERLLFGPSL+TS APVC  AAL+
Sbjct:  161 MGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALE 196
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4C0_ECTSI1.270e-1283.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4A4_ECTSI1.460e-1186.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:441279..441826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D7G4A4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28INW@1,2S5NB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.1699271-CDS-C-linearis_contig96:441278..4413131622930825.1699271-CDS-C-linearis_contig96:441278..441313Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 441279..441313 +
1690881269.332532-CDS-C-linearis_contig96:441278..4413131690881269.332532-CDS-C-linearis_contig96:441278..441313Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 441279..441313 +
1622930825.1936731-CDS-C-linearis_contig96:441753..4418261622930825.1936731-CDS-C-linearis_contig96:441753..441826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 441754..441826 +
1690881269.3476365-CDS-C-linearis_contig96:441753..4418261690881269.3476365-CDS-C-linearis_contig96:441753..441826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 441754..441826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17042.1prot_C-linearis_contig96.17042.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 441279..441826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17042.1

>prot_C-linearis_contig96.17042.1 ID=prot_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=36bp
MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK
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mRNA from alignment at C-linearis_contig96:441279..441826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17042.1 ID=mRNA_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at C-linearis_contig96:441279..441826+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCCGTGTATGGAGGACCTCACGTACAAGAGGTGAGAAGAGAGGGC
GGGACACGGGTAGAGAAGCGAAAGGGGGAGAAAGAGAGAGCGGGGAATCA
CATGCATCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGCCATATAGCTGTCG
CAGGGTGGCTCTTTGTGCTCGCTGAAGGGAGCTAGCTTGCGTGTGgctGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCGCGCCACCGTGTG
CAGAACATTCAACTCGAAAATCGACGATGGCACGGCTTCGAAGCAAGAGA
CTCTCGGACCACCTTTTTTGTCTCACCGGTTTTACGCTTCATTCACCCAT
GTTCAACGGCGACAACTGCCCCTTTTCCCCCGCCGGAAAAACGATGCGTC
CACATCCATGACAAATCAATCGCAGCACGGAGCGTCTCCTGTTCGGGCCG
TCGCTCCAGACAAGCCTCGCCCCGGTGTGCTCGCCCGCCGCGCTCAAG
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Coding sequence (CDS) from alignment at C-linearis_contig96:441279..441826+

>mRNA_C-linearis_contig96.17042.1 ID=mRNA_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at C-linearis_contig96:441279..441826+ (Chordaria linearis ClinC8C monoicous)
ATGGGGCCGTGTATGGAGGACCTCACGTACAAGAGATGGGGCCGTGTATG
GAGGACCTCACGTACAAGAGCACGGAGCGTCTCCTGTTCGGGCCGTCGCT
CCAGACAAGCCTCGCCCCGGTGTGCTCGCCCGCCGCGCTCAAGCACGGAG
CGTCTCCTGTTCGGGCCGTCGCTCCAGACAAGCCTCGCCCCGGTGTGCTC
GCCCGCCGCGCTCAAG
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