mRNA_C-linearis_contig96.17034.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17034.1
Unique NamemRNA_C-linearis_contig96.17034.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: D7G485_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G485_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 6.310e-104
Identity = 253/467 (54.18%), Postives = 288/467 (61.67%), Query Frame = 1
Query:    1 GVMRRXXXXXXXX--APKSLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSR----GDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSL-------PSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPP----------LTGRG----KLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFFGGNRSG-AAGSARP 1317
            G+MRRXXXXXXXX  A K LRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAP   P +    G+G        RGG G   +E S  +D R    G+D   GT  +RD  PAT AK          +T    DN  P  R ++RPRQS AAVTGELYREGGG+ RFWRGFAPSLILTCNPAINYTAFD+LKA+WLRRRDAAA + AG G   +  A        GT GFLNPLEAF VAAAAKSLAT++TYPLIRAKVVLMT+ SSPS+          SSPAV     P ++        G  +GS GS    +    G    RDG D R   N E  A              ++ RG     ++A       E   ++ +A   GR     G     M TVL++IFRREG GGLYAGCGAQLLHTILKSALLLA KEQIARAAASA+F GG+  G AAG A+P
Sbjct:  172 GLMRRXXXXXXXXXXASKPLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAPQRTPSVENNDGEGAG-----ERGGHG--AMEGSSPLDGRRCGVGND-TNGT--WRDPVPATTAK----------VTQAGGDNQAPIKRGQRRPRQSVAAVTGELYREGGGLGRFWRGFAPSLILTCNPAINYTAFDILKALWLRRRDAAAVA-AGVGSSTTAGASXXXXXXXGTEGFLNPLEAFLVAAAAKSLATLVTYPLIRAKVVLMTAPSSPSAPIVDRGRGNCSSPAVP----PAASASQLITPKGHVFGSCGSGKIGEPTGEG----RDGGDERLSNNGEERAATAXXXXADADATGMSDRGGSGHPIDASLGSAAAESTVAASSASAVGRGEGTTGGEMHSMATVLVDIFRREGIGGLYAGCGAQLLHTILKSALLLATKEQIARAAASALFLGGSSRGRAAGFAKP 609          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A835YZE1_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.800e-27
Identity = 124/412 (30.10%), Postives = 166/412 (40.29%), Query Frame = 1
Query:   64 LNLLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSRGDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQ-----------SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAAS 1266
            L+LL AA+AGA+N   TLP++N+ TR+QTA     P   R G+  +    +  G   ++   A    D+ GD          + AP     +     GG  + T+ R+                         S +A   +L+ EGG + RFWRG  PS+ILTCNPAINYTAFD LKA +L R                 V  G   G      FL PL AF +AAAAK++AT++TYPLIRAKV++MT +                                                           RT                   E GP +                            +   L +I R EG  GLYAGCG QLLHTILKSALL+A +E++A+ +A+
Sbjct:  124 LSLLTAALAGAINMLLTLPIDNVCTRLQTADAPAQPPARRDGESKA---AVTHGETAQQTPSAVEAGDAGGDG---------NGAPQQQQHSEDVSVGGTPVATSLREXXXXXXXXXXXXXXXXXXXXXXXXXSLSAAVADLHDEGG-VPRFWRGLLPSMILTCNPAINYTAFDALKAAYLARW----------------VNRGRPPGHHAE--FLGPLAAFGLAAAAKAVATLVTYPLIRAKVIMMTRK-----------------------------------------------------------RTA------------------EQGPGD----------------------------LMQCLADIARLEGLHGLYAGCGGQLLHTILKSALLVASREEVAKGSAA 399          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S2UVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVH3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-16
Identity = 81/261 (31.03%), Postives = 109/261 (41.76%), Query Frame = 1
Query:  487 WRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPA-VDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVV----PPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIAR 1254
            W G  PSL+L  NPAIN   FD +K +WL++R                       G R    +L P+EAF VA+ +KSLATV+TYPLIR K++LMT  +  +     S   V         IP   GDD          A T    +GV               ++G +V     PL+         T+ R   I  +VA                        +F  EG  G YAGCG QL++++ K A+LLA KE + R
Sbjct:  218 WNGLGPSLVLALNPAINMACFDRIKEMWLKKR-----------------------GIRNEEDYLGPIEAFLVASFSKSLATVLTYPLIRIKILLMTQNNLKTKFAEKSQVIVHTKCSQCRAIPKAEGDDSPE-------ALTPAPTDGV---------------DMGCMVCCCDQPLSD--------TDSRCGGIQQAVA-----------------------RVFEEEGLLGFYAGCGGQLMYSVCKGAMLLAAKEDVTR 402          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: M4BP29_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BP29_HYAAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.040e-14
Identity = 83/280 (29.64%), Postives = 113/280 (40.36%), Query Frame = 1
Query:  442 VTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKA-IWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278
            +  ++Y E G M+ FW+GF PSL+L  NP+INYT FD LK+ + L +  A  A  A +                     L  LEAF +AA AK++ATV+TYP+IRAKV LM ++  P+                                                                                TEP+  P +   AA+         GSS   M  VL  I   EGF G Y GC AQL++T+LKSALL+  KE+I +    A++ 
Sbjct:  162 IARDIYAENGWMS-FWKGFIPSLVLVSNPSINYTIFDRLKSQLQLSKMAAGKAKRASS---------------------LTALEAFVLAAIAKAVATVLTYPVIRAKV-LMQAQKEPT--------------------------------------------------------------------------------TEPQKNPSSHHQAAM---------GSS---MIQVLKRIGESEGFNGYYKGCSAQLVNTVLKSALLVMTKEEITKHTMRALYL 326          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: C1EJC5_MICCC (Mitochondrial carrier family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EJC5_MICCC)

HSP 1 Score: 81.3 bits (199), Expect = 5.740e-13
Identity = 77/277 (27.80%), Postives = 116/277 (41.88%), Query Frame = 1
Query:  427 QSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSG---TGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248
            Q   A   E+Y +GG  A FW G  PS +L  NPAIN+ AFD LK ++ R                 G  GG G   T        L PLEAFF+ AA+K++AT IT+PLIRAKV++M++                           + ++ A+ G++    +        RG R    G+ L + +  + +    G             E + + +  VE                 VL +  + EG GGLY G G QL  + + +A++   +EQ+
Sbjct:  168 QGLVATAREVYAKGGAPA-FWAGLGPSCLLVVNPAINFAAFDRLKLLYNR-----------------GFKGGKGRKLTANEAANMSLGPLEAFFIGAASKAIATSITFPLIRAKVLMMSA---------------------------DKENNAKKGNKKDDGRKSPGRTDRRG-RSPSPGKDLPSSKPDSELHRRIGA----------LTEKVRARLEFVE-----------------VLNDAIKAEGIGGLYKGLGVQLSRSAVAAAIMFMTREQL 371          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S4D6P2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6P2_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 7.920e-13
Identity = 87/299 (29.10%), Postives = 127/299 (42.47%), Query Frame = 1
Query:  481 RFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSP---SSLP--------------------------SSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIAS-SVAAVEGGRDGEVEGSSTR-------------GMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248
            R W+G APSL+LT NPAINYT +D LK + +  R    A+ A +G  + G                  LEAF +A+AAK +AT++TYPLIR K + M   ++P    SLP                          S+S A   +S P S +P    D   R  S G     +H        +  ++ ++ V             R  +E G  +  ++     S +  +  R  E E  S +             G+  +  ++F+    G LY GCG QL+H +LK A LL +KEQI
Sbjct:   75 RLWKGVAPSLLLTVNPAINYTIYDRLKQLIINFRRQQQATNATSGTSKIGA-----------------LEAFLLASAAKIIATLVTYPLIRVKAIQMAEEATPVTQQSLPINAVPVTQVCTAANRKRLDFEGASTISNSDAESENSAPKSCLPNNPYDMKHRCYSPGK----EHPDEKKTQRQSDLEFKSPV-------------RAAVEKGSVQRSIQMFEELSASKDQETRYEETEHDSNKLVLNMGSEKPLRPGVVALAQQLFQE---GALYRGCGGQLVHVVLKGAFLLMVKEQI 336          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A8H8SFA4_9AGAM (Mitochondrial carrier protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SFA4_9AGAM)

HSP 1 Score: 80.5 bits (197), Expect = 9.640e-13
Identity = 93/285 (32.63%), Postives = 119/285 (41.75%), Query Frame = 1
Query:  430 SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGS-RGSVAK-TQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278
            SF  V  E+ RE G ++  W G  PSL+LT NPAI Y AF+ +K++ L                      GS      T   L P +AF V A +K+LATV+TYP I AKV L  +RSSP S        D DS   S   L N    A  G+   S A+ T+H  N     +     R  V          LT           PRV+   S+VA                    +L  + R EGF G Y G GAQ+   +L  ALL  +K+Q  R A   + F
Sbjct:  169 SFVDVGREIVREDG-VSGLWAGLQPSLVLTVNPAITYGAFERIKSLMLA---------------------GS------TSSKLTPGKAFLVGALSKTLATVVTYPYIMAKVRLQ-ARSSPIS-------DDTDSGVESDTELVNVQQSAEEGTLAASYAEVTKHGENATHPSQ-----RPQV----------LT-----------PRVKAQRSAVA--------------------LLTRVLREEGFIGWYQGMGAQITKAVLSQALLFMLKDQFERYALLIMIF 371          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A024GMU3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMU3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.120e-12
Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  439 AVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSS 786
            A+  E+Y E G +  FWRG+AP+L+LT NP+INYT FD LK    R +  A                     QR T      LEAF +AA +K++ATV+TYP+IRAKV++ + + S
Sbjct:  161 ALGSEIYHEDG-LTAFWRGYAPALVLTSNPSINYTIFDTLKDTLQRWKRTALTKHC----------------QRAT---FTALEAFLLAAISKAIATVVTYPIIRAKVLMQSEKHS 256          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A8H3HM18_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3HM18_9AGAM)

HSP 1 Score: 78.2 bits (191), Expect = 5.310e-12
Identity = 79/283 (27.92%), Postives = 115/283 (40.64%), Query Frame = 1
Query:  430 SFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQIARAAASAVFF 1278
            SF  V  E+ +E G +A  W G  PS++LT NPAI Y AF+ +K++ L    A+A+S                         L P +AF V A +K+LATV+TYP I AKV L    +S S L  SS   + +        ++  ++G    S   V K+ H V  V                                GP +  ++P  S+V                     +L ++ R +G  G Y G GAQ+   +L  ALL  +K+Q  R A   + F
Sbjct:  166 SFVNVGREIVKEDG-VAGLWAGIKPSMVLTVNPAITYGAFERIKSVLL----ASASSSK-----------------------LTPGKAFLVGALSKTLATVVTYPYIMAKVRLQAGSASGSGLDDSSSESESE-----LSEIKGAEEGGLAASYAEVTKSGHNVTRV-------------------------------PGPPKNSMKPEKSAVR--------------------LLAKVLREDGLLGWYQGMGAQITKAVLAQALLFMLKDQFERYALVIMLF 364          
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Match: A0A7S2PU97_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU97_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.580e-12
Identity = 103/393 (26.21%), Postives = 148/393 (37.66%), Query Frame = 1
Query:   70 LLAAAMAGAVNQAFTLPLENITTRMQTAPPHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSRGDDGICGTVQFRDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQSFAAVTGELYREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVAGAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRAKVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAKTQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPIASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHTILKSALLLAIKEQI 1248
            LL  A +  +N A TLP + I++R+Q                G  S+V+      ++ ++   +V  RGD+ + GT +   L                 I   + + +LP    +++   ++     +  ++   +   W G  P+L+L  NPAI YT F+ LK   L+ R     S    G  R                 L   EAF     +K  AT++TYPLIRAKV+LM S          SP V  D            DD    GS GS                  +G    NDE  A   P                                       R +  +L+ IFR +G  GLY GC  QLLHTI+KSAL+L I+E+I
Sbjct:  138 LLLTAFSAMINTAITLPFDTISSRIQA---------------GHQSNVVSD----KDELQNQSIV--RGDNNLNGTREKEKLF----------------IKQFSLNTNLPKEAFQRKNTTAYNIDEEKRNQQLRTVLSLWNGLLPALLLCTNPAIQYTMFENLKTALLQHR----LSQLQQGSKR-----------------LTMGEAFVFGLISKFFATIMTYPLIRAKVMLMVS----------SPDVFED------------DDCNEVGSNGS------------------NGNAKSNDETRAKKYP---------------------------------------RSLPLLLISIFRNDGIRGLYRGCSVQLLHTIMKSALMLMIRERI 393          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G485_ECTSI6.310e-10454.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZE1_9STRA1.800e-2730.10Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2UVH3_9STRA1.070e-1631.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4BP29_HYAAE8.040e-1429.64Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
C1EJC5_MICCC5.740e-1327.80Mitochondrial carrier family n=1 Tax=Micromonas co... [more]
A0A7S4D6P2_HETAK7.920e-1329.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8H8SFA4_9AGAM9.640e-1332.63Mitochondrial carrier protein n=2 Tax=Ceratobasidi... [more]
A0A024GMU3_9STRA5.120e-1241.38Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8H3HM18_9AGAM5.310e-1227.92Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A7S2PU97_9STRA6.580e-1226.21Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:220438..222512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.2
Seed ortholog evalue5.8e-90
Seed eggNOG ortholog2880.D7G485
KEGG koko:K13354
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the allantoicase family
EggNOG OGsCOG4266@1,KOG0769@2759
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-02_001710.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size1465
Cds size1329
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17034.1prot_C-linearis_contig96.17034.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 220568..222506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.083067-UTR-C-linearis_contig96:220437..2205671622930823.083067-UTR-C-linearis_contig96:220437..220567Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 220438..220567 -
1690881268.055468-UTR-C-linearis_contig96:220437..2205671690881268.055468-UTR-C-linearis_contig96:220437..220567Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 220438..220567 -
1622930823.1529682-UTR-C-linearis_contig96:222506..2225121622930823.1529682-UTR-C-linearis_contig96:222506..222512Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 222507..222512 -
1690881268.0967596-UTR-C-linearis_contig96:222506..2225121690881268.0967596-UTR-C-linearis_contig96:222506..222512Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 222507..222512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.1025782-CDS-C-linearis_contig96:220567..2207081622930823.1025782-CDS-C-linearis_contig96:220567..220708Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 220568..220708 -
1690881268.0673578-CDS-C-linearis_contig96:220567..2207081690881268.0673578-CDS-C-linearis_contig96:220567..220708Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 220568..220708 -
1622930823.119898-CDS-C-linearis_contig96:221249..2222651622930823.119898-CDS-C-linearis_contig96:221249..222265Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 221250..222265 -
1690881268.0783877-CDS-C-linearis_contig96:221249..2222651690881268.0783877-CDS-C-linearis_contig96:221249..222265Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 221250..222265 -
1622930823.137067-CDS-C-linearis_contig96:222334..2225061622930823.137067-CDS-C-linearis_contig96:222334..222506Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 222335..222506 -
1690881268.0872889-CDS-C-linearis_contig96:222334..2225061690881268.0872889-CDS-C-linearis_contig96:222334..222506Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 222335..222506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17034.1

>prot_C-linearis_contig96.17034.1 ID=prot_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=443bp
MRRRAAAGGGGAPKSLRPSLNLLAAAMAGAVNQAFTLPLENITTRMQTAP
PHPPPMMARVGQGGSWSDVIRRGGGGREVVEASMVVDSRGDDGICGTVQF
RDLAPATPAKTPQGEEGGDGITTTNRDNDLPPVRRRQRPRQSFAAVTGEL
YREGGGMARFWRGFAPSLILTCNPAINYTAFDVLKAIWLRRRDAAAASVA
GAGGPRSGVAGGSGTGQRGTGGFLNPLEAFFVAAAAKSLATVITYPLIRA
KVVLMTSRSSPSSLPSSSPAVDVDSYPVSTIPLQNGDDGARWGSRGSVAK
TQHAVNGVRGDRDGVDGRTLVNDEVGAVVPPLTGRGKLEAGPTEPRVEPI
ASSVAAVEGGRDGEVEGSSTRGMGTVLMEIFRREGFGGLYAGCGAQLLHT
ILKSALLLAIKEQIARAAASAVFFGGNRSGAAGSARPRPAPG*
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mRNA from alignment at C-linearis_contig96:220438..222512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17034.1 ID=mRNA_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2075bp|location=Sequence derived from alignment at C-linearis_contig96:220438..222512- (Chordaria linearis ClinC8C monoicous)
GGGGTCATGCGACGGCGGGCAGCGGCCGGCGGCGGCGGCGCCCCCAAGTC CCTCCGTCCTTCTCTCAACCTCCTCGCCGCCGCCATGGCCGGCGCTGTGA ATCAGGCCTTCACGCTCCCGCTGGAGAACATCACCACAAGAATGCAAACG GCACCGCCGCACCCGCCGCCGATGATGGGTGCCACCAAGCATCGCTCGGC CAAGGGAAGCAGCCATGAGACGGAAGCTAGAGATGGAGGAGCTAGAGCGA GGGTGGGGCAGGGTGGTTCTTGGTCTGATGTAATTAGACGCGGCGGCGGT GGGCGGGAGGTGGTGGAAGCGTCGATGGTTGTAGATAGCCGCGGTGATGA CGGCATTTGCGGTACCGTCCAGTTTAGAGACTTAGCTCCAGCGACACCGG CCAAGACGCCGCAGGGAGAAGAAGGAGGCGACGGCATCACCACCACCAAC AGAGATAACGACCTGCCGCCGGTTCGGCGGCGCCAACGGCCGCGGCAGTC CTTCGCAGCCGTGACGGGGGAGCTCTACCGCGAGGGCGGGGGTATGGCGC GCTTCTGGCGCGGGTTCGCTCCGTCGCTGATCCTCACTTGCAATCCGGCG ATAAACTACACGGCGTTTGACGTATTGAAGGCGATCTGGCTCCGACGAAG AGACGCGGCCGCAGCCTCTGTCGCCGGAGCCGGTGGCCCTAGGAGCGGGG TGGCGGGGGGTAGCGGGACCGGGCAGAGAGGGACGGGGGGGTTTCTGAAC CCTCTCGAGGCCTTTTTCGTTGCGGCCGCGGCGAAGTCGCTGGCGACCGT CATCACGTACCCCCTTATCCGCGCCAAGGTTGTACTGATGACCTCGCGCT CTTCGCCGTCGTCGTTGCCGTCGTCTTCACCGGCTGTCGATGTCGATAGC TACCCCGTTTCTACGATACCGTTGCAAAACGGTGACGATGGGGCCAGATG GGGCAGTCGCGGGAGCGTCGCGAAGACGCAACACGCTGTGAACGGTGTCA GGGGGGATAGAGACGGGGTAGACGGCAGGACGTTGGTCAACGATGAAGTC GGCGCTGTCGTGCCGCCGTTGACGGGGAGAGGAAAACTAGAAGCAGGGCC GACGGAGCCTCGTGTGGAGCCTATAGCCTCATCGGTAGCAGCCGTGGAAG GAGGGAGGGACGGGGAGGTTGAGGGCAGCAGCACGCGCGGCATGGGAACA GTCTTGATGGAAATTTTCCGCCGTGAGGGGTTCGGCGGCTTGTACGCGGG CTGCGGTGCTCAGGTGAATCAAACCGGAACATACCTCGCATTGACGTAGA TTGGAATCGGTCGCGCATCGTACTATATGATTCGTGTAGCCCTTTGACGT TTTAGCTGCAACGTACACGTGATGGTGTAAAAATGTTTTTGGCATGCCTG CCGTTGTCACTGCCGGTGGATTTTGGAGGGCGGGGTGCGAGTGGCTGGGT TGGAAACACGCAAGTATGGAGAGCGGTATTGTCGCTTGGGGGGAGTTGGG ATGTCCACGGTAGCACGTTGTGTTGGATACTGAAACATGTAGGTGGCTTG TAGCATCTCGAGACATGCACCGCACAAGAAATCTGCCCTTCTTCGGTTCA TCGTTGCTCTTCTTTTCAGTATCTGCTGCCTGGTGTTTGTGTTCATCTAC CGTAGCTGCTAGCCCTGTTCTCCAACACCGTTATGACCGCGGGTTACAGT GCATCGCAACAAAAAAACGCGTGCCATGCGTTGACCGCCGATGGTGGATT TCGACTGACGTTGCCCCCCCTCTCCATAATCGCATGCATGCCCCCCCCAA CCAGCTTCTGCATACCATTCTCAAGAGCGCGTTGCTGCTGGCCATCAAGG AGCAAATTGCGAGGGCCGCAGCGTCTGCCGTGTTTTTCGGCGGCAACAGG AGCGGCGCTGCCGGTTCCGCGAGACCACGACCAGCCCCCGGCTAGAGTCC GGCATGTGGCAGCATCGGTAGATAGCCGGAGAGACATGAATCGGTGATCC ACGCTCTCGCAGAGGAGGTTAATGTAGATATGGCCAGCATGCAGTCGTTT GCGATGCATGTAGTCTTGGCTGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig96:220438..222512-

>mRNA_C-linearis_contig96.17034.1 ID=mRNA_C-linearis_contig96.17034.1|Name=mRNA_C-linearis_contig96.17034.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2658bp|location=Sequence derived from alignment at C-linearis_contig96:220438..222512- (Chordaria linearis ClinC8C monoicous)
ATGCGACGGCGGGCAGCGGCCGGCGGCGGCGGCGCCCCCAAGTCCCTCCG
TCCTTCTCTCAACCTCCTCGCCGCCGCCATGGCCGGCGCTGTGAATCAGG
CCTTCACGCTCCCGCTGGAGAACATCACCACAAGAATGCAAACGGCACCG
CCGCACCCGCCGCCGATGATGGATGCGACGGCGGGCAGCGGCCGGCGGCG
GCGGCGCCCCCAAGTCCCTCCGTCCTTCTCTCAACCTCCTCGCCGCCGCC
ATGGCCGGCGCTGTGAATCAGGCCTTCACGCTCCCGCTGGAGAACATCAC
CACAAGAATGCAAACGGCACCGCCGCACCCGCCGCCGATGATGGCGAGGG
TGGGGCAGGGTGGTTCTTGGTCTGATGTAATTAGACGCGGCGGCGGTGGG
CGGGAGGTGGTGGAAGCGTCGATGGTTGTAGATAGCCGCGGTGATGACGG
CATTTGCGGTACCGTCCAGTTTAGAGACTTAGCTCCAGCGACACCGGCCA
AGACGCCGCAGGGAGAAGAAGGAGGCGACGGCATCACCACCACCAACAGA
GATAACGACCTGCCGCCGGTTCGGCGGCGCCAACGGCCGCGGCAGTCCTT
CGCAGCCGTGACGGGGGAGCTCTACCGCGAGGGCGGGGGTATGGCGCGCT
TCTGGCGCGGGTTCGCTCCGTCGCTGATCCTCACTTGCAATCCGGCGATA
AACTACACGGCGTTTGACGTATTGAAGGCGATCTGGCTCCGACGAAGAGA
CGCGGCCGCAGCCTCTGTCGCCGGAGCCGGTGGCCCTAGGAGCGGGGTGG
CGGGGGGTAGCGGGACCGGGCAGAGAGGGACGGGGGGGTTTCTGAACCCT
CTCGAGGCCTTTTTCGTTGCGGCCGCGGCGAAGTCGCTGGCGACCGTCAT
CACGTACCCCCTTATCCGCGCCAAGGTTGTACTGATGACCTCGCGCTCTT
CGCCGTCGTCGTTGCCGTCGTCTTCACCGGCTGTCGATGTCGATAGCTAC
CCCGTTTCTACGATACCGTTGCAAAACGGTGACGATGGGGCCAGATGGGG
CAGTCGCGGGAGCGTCGCGAAGACGCAACACGCTGTGAACGGTGTCAGGG
GGGATAGAGACGGGGTAGACGGCAGGACGTTGGTCAACGATGAAGTCGGC
GCTGTCGTGCCGCCGTTGACGGGGAGAGGAAAACTAGAAGCAGGGCCGAC
GGAGCCTCGTGTGGAGCCTATAGCCTCATCGGTAGCAGCCGTGGAAGGAG
GGAGGGACGGGGAGGTTGAGGGCAGCAGCACGCGCGGCATGGGAACAGTC
TTGATGGAAATTTTCCGCCGTGAGGGGTTCGGCGGCTTGTACGCGGGCTG
CGGTGCTCAGCGAGGGTGGGGCAGGGTGGTTCTTGGTCTGATGTAATTAG
ACGCGGCGGCGGTGGGCGGGAGGTGGTGGAAGCGTCGATGGTTGTAGATA
GCCGCGGTGATGACGGCATTTGCGGTACCGTCCAGTTTAGAGACTTAGCT
CCAGCGACACCGGCCAAGACGCCGCAGGGAGAAGAAGGAGGCGACGGCAT
CACCACCACCAACAGAGATAACGACCTGCCGCCGGTTCGGCGGCGCCAAC
GGCCGCGGCAGTCCTTCGCAGCCGTGACGGGGGAGCTCTACCGCGAGGGC
GGGGGTATGGCGCGCTTCTGGCGCGGGTTCGCTCCGTCGCTGATCCTCAC
TTGCAATCCGGCGATAAACTACACGGCGTTTGACGTATTGAAGGCGATCT
GGCTCCGACGAAGAGACGCGGCCGCAGCCTCTGTCGCCGGAGCCGGTGGC
CCTAGGAGCGGGGTGGCGGGGGGTAGCGGGACCGGGCAGAGAGGGACGGG
GGGGTTTCTGAACCCTCTCGAGGCCTTTTTCGTTGCGGCCGCGGCGAAGT
CGCTGGCGACCGTCATCACGTACCCCCTTATCCGCGCCAAGGTTGTACTG
ATGACCTCGCGCTCTTCGCCGTCGTCGTTGCCGTCGTCTTCACCGGCTGT
CGATGTCGATAGCTACCCCGTTTCTACGATACCGTTGCAAAACGGTGACG
ATGGGGCCAGATGGGGCAGTCGCGGGAGCGTCGCGAAGACGCAACACGCT
GTGAACGGTGTCAGGGGGGATAGAGACGGGGTAGACGGCAGGACGTTGGT
CAACGATGAAGTCGGCGCTGTCGTGCCGCCGTTGACGGGGAGAGGAAAAC
TAGAAGCAGGGCCGACGGAGCCTCGTGTGGAGCCTATAGCCTCATCGGTA
GCAGCCGTGGAAGGAGGGAGGGACGGGGAGGTTGAGGGCAGCAGCACGCG
CGGCATGGGAACAGTCTTGATGGAAATTTTCCGCCGTGAGGGGTTCGGCG
GCTTGTACGCGGGCTGCGGTGCTCAGCTTCTGCATACCATTCTCAAGAGC
GCGTTGCTGCTGGCCATCAAGGAGCAAATTGCGAGGGCCGCAGCGTCTGC
CGTGTTTTTCGGCGGCAACAGGAGCGGCGCTGCCGGTTCCGCGAGACCAC
GACCAGCCCCCGGCTAGCTTCTGCATACCATTCTCAAGAGCGCGTTGCTG
CTGGCCATCAAGGAGCAAATTGCGAGGGCCGCAGCGTCTGCCGTGTTTTT
CGGCGGCAACAGGAGCGGCGCTGCCGGTTCCGCGAGACCACGACCAGCCC
CCGGCTAG
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