mRNA_C-linearis_contig96.17033.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17033.1
Unique NamemRNA_C-linearis_contig96.17033.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.150e-41
Identity = 75/97 (77.32%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER 288
            WV TKL  QGHRSPIRRPARATMEWS+ TH+  RLRLWETLRG VGCVLQRGPSFAWLS+++  SKR R RL  LSVPVLV EA LD LVRSDGI R
Sbjct:  265 WVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVLVLEAGLDHLVRSDGIAR 361
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BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.000e-31
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 WVATKLA-QGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQRGPSFAWLSQAIGTSKRGRRRLGDLSV 228
            WV TKL  QGHRSPIRRPARA+MEWS+ TH+  RLRLWETLRG VGCVLQRGPSFAWLS+++  SKR R RL  LSV
Sbjct:  115 WVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G484_ECTSI4.150e-4177.32Lysophospholipase l2 pldb, hydrolase of alpha/beta... [more]
A0A6H5KMI3_9PHAE2.000e-3175.32Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:196156..197623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size292
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17033.1prot_C-linearis_contig96.17033.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 196156..197621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.9765263-CDS-C-linearis_contig96:196155..1961871622930822.9765263-CDS-C-linearis_contig96:196155..196187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 196156..196187 +
1690881268.0232818-CDS-C-linearis_contig96:196155..1961871690881268.0232818-CDS-C-linearis_contig96:196155..196187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 196156..196187 +
1622930822.9978635-CDS-C-linearis_contig96:196647..1968401622930822.9978635-CDS-C-linearis_contig96:196647..196840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 196648..196840 +
1690881268.0331702-CDS-C-linearis_contig96:196647..1968401690881268.0331702-CDS-C-linearis_contig96:196647..196840Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 196648..196840 +
1622930823.0134206-CDS-C-linearis_contig96:197558..1976211622930823.0134206-CDS-C-linearis_contig96:197558..197621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 197559..197621 +
1690881268.0425003-CDS-C-linearis_contig96:197558..1976211690881268.0425003-CDS-C-linearis_contig96:197558..197621Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 197559..197621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17033.1

>prot_C-linearis_contig96.17033.1 ID=prot_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
WVATKLAQGHRSPIRRPARATMEWSKATHEMARLRLWETLRGEVGCVLQR
GPSFAWLSQAIGTSKRGRRRLGDLSVPVLVFEAVLDRLVRSDGIER
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mRNA from alignment at C-linearis_contig96:196156..197623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGGTGGGATACTCCGGGAAG
GTATTCTTTGGGTGTGCATCGGCGTTTATGTTTGAAACAGATCTTCATTC
GAGCTTGGCAGACTCCGGCACATTCGCGACCACACTAGCTGGGTTCGTTT
AGATGTGCTCACGACAACTTCCACAGGAAGAAAAGCGGAACTGGACGACA
TTGATGACAAAGTCTCGTGTGTTGCTCGTCTGGCTGCAGACACGCGTGGC
GGAAATTGATTGGTGCATTGGCACGCTCATTCATGGTTTCTCCTGCAGCT
GCTAGAAATATTGAGATCGTGGCGTGCATCACGTCGACCACCCTGACTTC
CTCACGGCGCATCATACACTACGGCAGCACCATGATCGCGCCTGCCTCTC
CGCTAGCTCATTTGCATTTGTCTCCCCCTGTGCCCGTCCGCCCACCCTAC
GGCTCGTCCCTTGCAAAATTTCACGGCGTGAAATGAGAGTAGGAGCCCAA
TCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCGAAGGCGACGCATGAA
ATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGGTGAGGTGGGCTGCGT
GCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTCAGGCCATCGGCACGT
CTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCGGTGAGCGTGCCGGAT
CGGCCAACGATTACGGTTGCGGCGCGATGCATGGATGTGGTACAGTGCAA
GGCATGGATTTGTTCAATGGCTCAGGGTTTAGGGGTGCTATTTAGCTCGG
TTTCTGTTGTTTCCTGCACTTCGTTGGGCTCTTGAACTATGATGGAATTG
GGGCGATCGATGTTGTTTCAAAGTATAAATGCTTTGTTTTCTGGTGAGCT
AAGTAAGGTGCCGTCGAGTAAAGGAAGGGACTGCAGTTGTGAAGGCACAA
CTCTTAGGCCCAAGGGCAACATCAAATTGTTTGATTTGAAGCGCAGCAGT
GCGTCGTGGTGTTACTGCTTGAGTGAGGTTGATGTGCGCCGTCGTCAACA
CTACTGTTTGCTCTTTTTTTTTGTGTGGCTGTGGCGCTTTTTGATGTGGC
ACGATGCTCGCTCAATCGCGAGATATCACCCGTGATGTGTCCGACGCTCT
TGACGCCCTTGACTGTGCTTGGCGTGTTTGGATTGTTTTTTCTCTCTCAA
TCTTTCCGAGTTGACTTACAATGCGCGCAGGTGCCCTTTTTGGCGCCGCT
CGGAGCAAAATTGAACCTTTCAGTAATCTGAGCCATAACTTTGATAATTC
ATTTTGTTTTTGGTCCTCCCTCTCCCGCCACTGCCCTACGCTGTTACTGT
ATGCCGCTATTGTTGACCTGTTGTTCTAACGACTTTTTCGGTTTCGTCTA
CAGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATC
CGACGGCATAGAGCGGTT
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Coding sequence (CDS) from alignment at C-linearis_contig96:196156..197623+

>mRNA_C-linearis_contig96.17033.1 ID=mRNA_C-linearis_contig96.17033.1|Name=mRNA_C-linearis_contig96.17033.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig96:196156..197623+ (Chordaria linearis ClinC8C monoicous)
TGGGTTGCAACCAAGCTCGCCCAGGGACACAGTGGGTTGCAACCAAGCTC
GCCCAGGGACACAGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGA
GTGGTCGAAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCC
TCCGGGGTGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGG
CTGTCTCAGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGA
TCTGTCGGAGCCCAATCAGGCGGCCCGCCCGGGCAACAATGGAGTGGTCG
AAGGCGACGCATGAAATGGCGCGTCTGCGGCTCTGGGAGACCCTCCGGGG
TGAGGTGGGCTGCGTGCTGCAGCGAGGACCGAGCTTCGCGTGGCTGTCTC
AGGCCATCGGCACGTCTAAGCGTGGCCGGCGGCGGCTTGGTGATCTGTCG
GTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGATTGGTACGATCCGA
CGGCATAGAGCGGGTCCCCGTTCTGGTTTTCGAGGCTGTCTTAGACAGAT
TGGTACGATCCGACGGCATAGAGCGG
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