prot_C-linearis_contig96.17026.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig96.17026.1
Unique Nameprot_C-linearis_contig96.17026.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length338
Homology
[Close]
BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.610e-79
Identity = 177/277 (63.90%), Postives = 189/277 (68.23%), Query Frame = 0 
Query:   12 RGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAVDDAGEEDAASQPGLALLGLFGVESPSXXXXXXXXXXXXXXXXTASXXXXTL-VASTTSHAP----SAPNGGSQFRPAPASAPQKSEGQGXXXXXXXXXXXXGGDSGGVDGA-GTGRA-GGSKLFKGFEKTETVVRXXXXXXXXXXXXXXXXXLPPMGAGAHLTHRYPKDIWPGHKPPHHSVGVGEANGVGGEGAQEEQLEFFCDACDETIPNGVERMECAVCRDEFCLCHRCYDEGEV 281
            RGRKRKRQ VS+AA ELLEEVKLFHMAKPVNPSIPPP VDD GE DAASQPGLALLGL GVES S                 AS    ++  +STT HAP       NGG    P+  SA   S+ QG            G   GG +G   TGR  G S+LFKGFEKTETVVRXXXXXXXXXXXXXXXX +PP G G H+THRYPKDIWPGHKPP+H VG GE    G     EEQLEFFCD CDETIP+GVERMECAVC DEFCLCH CYDEGEV
Sbjct:   12 RGRKRKRQ-VSWAAAELLEEVKLFHMAKPVNPSIPPPVVDDGGE-DAASQPGLALLGLLGVESSSSLPASTSSFS------AASPSPASVDSSSTTFHAPVGGAGIVNGGDNSHPSTTSAQLPSDVQGGSFVGSSSHSGDG--PGGTEGGPATGRTVGASRLFKGFEKTETVVRXXXXXXXXXXXXXXXX-IPPSGEGEHVTHRYPKDIWPGHKPPNHIVG-GEGANDGERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEV 276
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI1.610e-7963.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:135976..138634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17026.1mRNA_C-linearis_contig96.17026.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig96 135103..138684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig96.17026.1 ID=prot_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=338bp
MIASEAGSSGDRGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAV
DDAGEEDAASQPGLALLGLFGVESPSPSPSPSSAVAASSSSSTASPSPST
LVASTTSHAPSAPNGGSQFRPAPASAPQKSEGQGGGGGGGGNSSSSGGDS
GGVDGAGTGRAGGSKLFKGFEKTETVVRRKKLVAPPPPPPETPPPLPPMG
AGAHLTHRYPKDIWPGHKPPHHSVGVGEANGVGGEGAQEEQLEFFCDACD
ETIPNGVERMECAVCRDEFCLCHRCYDEGEVRGTSTVISCYMLLFQLQYL
TSRLIPLVVVDSCFWRPVTYNSVEAYHSFGSCRCRDM*
back to top