Homology
BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Match:
D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)
HSP 1 Score: 255 bits (651), Expect = 5.080e-76
Identity = 177/277 (63.90%), Postives = 189/277 (68.23%), Query Frame = 3
Query: 84 RGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAVDDAGEEDAASQPGLALLGLFGVESPSXXXXXXXXXXXXXXXXTASXXXXTL-VASTTSHAP----SAPNGGSQFRPAPASAPQKSEGQGXXXXXXXXXXXXGGDSGGVDGA-GTGRA-GGSKLFKGFEKTETVVRXXXXXXXXXXXXXXXXXLPPMGAGAHLTHRYPKDIWPGHKPPHHSVGVGEANGVGGEGAQEEQLEFFCDACDETIPNGVERMECAVCRDEFCLCHRCYDEGEV 893
RGRKRKRQ VS+AA ELLEEVKLFHMAKPVNPSIPPP VDD GE DAASQPGLALLGL GVES S AS ++ +STT HAP NGG P+ SA S+ QG G GG +G TGR G S+LFKGFEKTETVVRXXXXXXXXXXXXXXXX +PP G G H+THRYPKDIWPGHKPP+H VG GE G EEQLEFFCD CDETIP+GVERMECAVC DEFCLCH CYDEGEV
Sbjct: 12 RGRKRKRQ-VSWAAAELLEEVKLFHMAKPVNPSIPPPVVDDGGE-DAASQPGLALLGLLGVESSSSLPASTSSFS------AASPSPASVDSSSTTFHAPVGGAGIVNGGDNSHPSTTSAQLPSDVQGGSFVGSSSHSGDG--PGGTEGGPATGRTVGASRLFKGFEKTETVVRXXXXXXXXXXXXXXXX-IPPSGEGEHVTHRYPKDIWPGHKPPNHIVG-GEGANDGERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEV 276
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.08e-76 / Id = 63.90 Sequence D7G479_ECTSI
Match Name E-value Identity Description
D7G479_ECTSI 5.080e-76 63.90 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-02_001620.1 Exons 4 Model size 1908 Cds size 1014 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930821.3948808-UTR-C-linearis_contig96:135102..135616 1622930821.3948808-UTR-C-linearis_contig96:135102..135616 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 135103..135616 - 1690881267.1680791-UTR-C-linearis_contig96:135102..135616 1690881267.1680791-UTR-C-linearis_contig96:135102..135616 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 135103..135616 - 1622930821.408655-UTR-C-linearis_contig96:135645..135975 1622930821.408655-UTR-C-linearis_contig96:135645..135975 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 135646..135975 - 1690881267.1797726-UTR-C-linearis_contig96:135645..135975 1690881267.1797726-UTR-C-linearis_contig96:135645..135975 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 135646..135975 - 1622930821.4747388-UTR-C-linearis_contig96:138634..138684 1622930821.4747388-UTR-C-linearis_contig96:138634..138684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 138635..138684 - 1690881267.2207823-UTR-C-linearis_contig96:138634..138684 1690881267.2207823-UTR-C-linearis_contig96:138634..138684 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 138635..138684 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930821.422758-CDS-C-linearis_contig96:135975..136366 1622930821.422758-CDS-C-linearis_contig96:135975..136366 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 135976..136366 - 1690881267.190015-CDS-C-linearis_contig96:135975..136366 1690881267.190015-CDS-C-linearis_contig96:135975..136366 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 135976..136366 - 1622930821.4380646-CDS-C-linearis_contig96:136950..137480 1622930821.4380646-CDS-C-linearis_contig96:136950..137480 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 136951..137480 - 1690881267.2001784-CDS-C-linearis_contig96:136950..137480 1690881267.2001784-CDS-C-linearis_contig96:136950..137480 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 136951..137480 - 1622930821.460362-CDS-C-linearis_contig96:138541..138634 1622930821.460362-CDS-C-linearis_contig96:138541..138634 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 138542..138634 - 1690881267.2106168-CDS-C-linearis_contig96:138541..138634 1690881267.2106168-CDS-C-linearis_contig96:138541..138634 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 138542..138634 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17026.1
>prot_C-linearis_contig96.17026.1 ID=prot_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=338bp
MIASEAGSSGDRGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAV back to top mRNA from alignment at C-linearis_contig96:135103..138684-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17026.1 ID=mRNA_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3582bp|location=Sequence derived from alignment at C-linearis_contig96:135103..138684- (Chordaria linearis ClinC8C monoicous)CGCCGCCGCACCCGGCACAGCAGCAAACCACTAGACACTCGGTCGGTAGC
ATGATAGCTTCGGAGGCAGGCTCCTCCGGTGATAGAGGGAGGAAACGCAA
GCGTCAAAGGGTTTCCTTTGCCGCCGGAGAGTTGCTTGAAGAG GTGAGTG
ACGACTAGTCAGTCTACAAGTAGGCGTTTTCAAATCGGCGCACGCCTCCC
CCTACAACTACATCCTTGCGGCAGGCTTAGTAAAACACAGTAGGCATTAG
AGCGCGCCAAGCAAGGGTTGGGTACTAGATACAAACAAGTAGTTCGCTTA
TATTTGTTTCTCGCGAATCTCATTTATGCTACGCGCAATGTTGATGTTCC
CGAACGGGTGACTTGGGAGAGGTATTGAGATGTGGAGACACCTAGTCTAC
TGCTGCCTGTACAACACGAGTAGTGACCAAAGACAACCAATTCTCTACCC
CTGCTACTTACATTTTTTTTTACAGTCAGCGGCACCTATATACCGTGTGG
GTTGGGAGTCTAATTTATTCCGGTATTTGTTACAATTTCTTTGCGCAGTT
TGCACTCTAAATATTTGTACACACATCTAAGGTTTTGGTCGCTTCGCGCC
CCCGCTCCATTGGAAAAGCGATTCCAAGGCAATGTTCAATGCATACAGAG
CTGCTGGTGTCGGAACGCACGGGAAGCGGAACTGCCGCGGGGTATGGTCG
AATTTCGGAAGAGAGAAAAGATGGAATAGAGCTCTCACAGACGTAACAAC
GGAGCAATCCTAGAGAAAAGACAAATTGTGAGAGGACTCCTTGGTACACC
TATAGACTAGGGTGCTTTGGGCGCGCTTAAGGAGGGGGTAGGGTGGGCAC
ACATTCGTACATACAGAGTCCGCCGTAGAAGGGAGGTATTGCTGATGTGT
TAAAGCTGTCTTGTGTTGTGCGATTGAATCGACAACACCGCGTGTCTCTT
CTACGGGCGTCAATGCCGGTACACTAAACTGACAAATACGAAATCAGCTC
AGTGCCCGTGCCACCTTTTCCTCAATGGCAGGTATGGTGCACATTGCTCA
ATACTTGTTTTCCTCTATCTAAGCTGGTAGTCACGCACGCATGCAAAGGC
CATCTGCGTCCCGTGCGGGCACGGTATGCACGCAGCAGTATTGATTTCTC
CAGCATCAGATGGGATGCCAAGGACGACCACCCCCAACCCCTTGCATCAT
ACAGGTGAAGCTGTTCCACATGGCCAAACCCGTAAATCCGTCAATACCAC
CTCCCGCGGTGGACGACGCTGGAGAGGAAGACGCTGCTAGTCAACCAGGA
CTCGCGCTCCTCGGTCTGTTCGGGGTGGAGTCACCATCACCATCACCATC
ACCCTCATCCGCAGTAGCGGCGTCATCGTCATCGTCAACGGCGTCGCCCT
CTCCGTCCACTCTTGTTGCCTCCACCACCTCTCACGCTCCCAGTGCACCC
AACGGAGGGAGTCAGTTCCGACCAGCGCCCGCTTCTGCACCACAAAAGTC
GGAAGGGCAAGGCGGGGGAGGAGGAGGCGGTGGCAACAGTAGTAGCAGCG
GGGGAGATAGTGGTGGAGTGGATGGGGCAGGGACCGGCCGTGCAGGAGGA
AGCAAGCTCTTTAAAGGATTCGAAAAAACGGAGACGGTGGTGAGGAGGAA
AAAGCTCGTGGCGCCCCCACCCCCACCGCCCGAAACGCCTCCGCCGTTGC
CCCCAATGGGCGCAGGCGCGCATTTGACGCATCG GTGAGAGAGACAGAGC
GAGAGGAGAGATGCTTGCAGAGTGTGGCGTGAAAACTGCTGTGTACTCTC
GCGCCCTTAGCACGATAGGTTCCCACTTACTGTACCACCATACATTTGTA
TTTCAGCAGAGTCGTTCTGCCGAAACCCACGGGTAAGGATTTCACCCCGT
GCTTCAAGAACTACGGCAGATAGCGCCTTGTCACAAACGTGCCAAACCAG
CGAGCCGAGACATTCCACGGTGCTTTGGCTAGTGGGCGCGGTTGAAAAGA
GAATACGCGTGCTGAAACAATGGACGCATCGCACATTGGTCCACTTCTTG
TGGCGAAGGTGTCATATCATTCGCGTGCCGGAGCAGCTCCAATGACTGAT
AGCTTTCAAACATATCACACTTCGCCCCAGCAATGTTAATTTGTTCTTGA
ATCGAATGCCCGTGCCCTTGATTGACCCTTGACAGAGTACAGCGCTTTTC
TCGCAATGTCGCGCACATACCCGCGTACCCACATACCTTGCACAGCCCGA
CTAATTTTCCAGCACCTTTCCGCGACTTCGAATCCTGACGGATTGTCATT
CATTTTCCCTCCTCACAGGTACCCGAAAGATATTTGGCCGGGGCACAAAC
CCCCACATCATTCTGTCGGGGTCGGGGAGGCAAATGGGGTCGGAGGCGAG
GGGGCGCAGGAAGAACAGTTGGAGTTTTTTTGTGACGCCTGCGATGAGAC
TATCCCCAACGGTGTCGAGCGCATGGAGTGCGCGGTCTGTCGAGATGAAT
TCTGTTTGTGTCATCGTTGCTACGACGAGGGAGAGGTACGCGGTACTTCT
ACTGTCATAAGTTGCTACATGCTGCTGTTTCAACTCCAGTATCTGACGTC
AAGATTGATACCGCTTGTTGTGGTAGACTCCTGCTTTTGGAGACCCGTAA
CCTATAACTCTGTCGAGGCGTACCACAGCTTTGGATCGTGTCGGTGTCGT
GACATGTGA TATGACAGAAAAATCTCTGTCTGTCAGCCGTGTGCAGAGTA
GCTCCAAACGACGATATGGATCGATCGATCGACCGACCGCTGGATCGATG
ACTCTCGTTGGAATCTCCTCGCTACTCTGTGGCTTGCGTTTTGTTGGCAG
CGGCACCTGGCAAGCACACCGCCGTGCTAGTCGATCATTCCGTCTCGGAT
GTACTGTTGCTGTGCTCATTTATCTCCCAGTCGTTGCGGTCTTGCCCACG
CACTCGGAATAGTTGACCTTCGATTTGGGCTGACTAAGCTATGAACTGGC
CATTTTCTCGATGAAAGTAGTGTACCGATCGTATCCTCC TTTGCATTCGT
TTTTGTCTCCTCGCAGGTCCTGGACAAGAGGCACAAGCACGAGCTTCTCC
CCTCCGCAGCTCCGTTTCACATTACGCGATCTGCCACCAGCGCAGAGGCT
GCGCTAGAGGCAGCTAAAGCTCTACACGTCACGGAAGCTCAGGGTGGGGA
GGGGGTACCCTATGATGATGACGATCTGGGTTAACCGTTCTCCGCGCCGT
TCTAAGATAGTTGCTCGTGGCGGGCTTCTTGTGGAAAATTATCTTGTCAC
TTTGGTGATCATCTTCCAAGCAGCACCGATGCATTTCCACTTGCCGAGTA
TCAAGCATTGAAGTCGGTAGTAGTGGTTGTACTGCGTGTAAGGTGCCCCG
TCGTACTGGGCTTGCTGTGTGGTTTCATGTAGCGACCGACGTCAAGGAAT
TTCGCTGCAGCGGACGTCCTCTTCACCTCAGACTTCAGCAGTAATAAACG
CGGTTTCAAGTATCGAGCGTTTTTCAAGAGTATTTTTATTGATTTTTGCA
GTCCGCCTCTAACTTGCCCAGAAATAAACAAA back to top Coding sequence (CDS) from alignment at C-linearis_contig96:135103..138684-
>mRNA_C-linearis_contig96.17026.1 ID=mRNA_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at C-linearis_contig96:135103..138684- (Chordaria linearis ClinC8C monoicous) back to top