mRNA_C-linearis_contig96.17013.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17013.1
Unique NamemRNA_C-linearis_contig96.17013.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.260e-53
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 3 
Query:  543 RRGLSRTCESLSLPDVGLHHKFRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRN-GRWAWVLKKNEQAHCRENGDAASAQSARPPIS 1199
            R G  R  ++LS  ++G H KFR+ FLC H L EVPCGP G G+PI+  KDWVKQ  PL++ SLW+LRVAVG VSNVDLPLN+VL A V ATGA +L+G+G +VP+   +  +P+F+EGAT  +   FKDL+G +Y+ LC FM++ E S P+ LSGCLPC R +         V+W+D MVQVR+ + GR AWVLK NE+A  RE+G A +   A  P+S
Sbjct:  960 RAGWDRWTKALS--EMGFH-KFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDVESSPPQCLSGCLPCHRTLAV-------VDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGGAPATAGA--PVS 1166
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BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.820e-22
Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 3 
Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
            F L FLCE    E+PCGP G G+ +           PL++ +LW++++AVGTV++VDLPL+ VL+A + AT A VL+   ++   SA  D      EG    Q++ FK+L G AYK LCDFM + E      R   CLP  RP      +    +W+  M  +++  G ++WV K +EQ
Sbjct: 1963 FVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMTKEEFGPEEARCESCLPWYRPRVH-EPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129
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BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.060e-20
Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 3 
Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
            F L  LCE    E+PCGP G G+ +           PL++ +LW++++AVGTV++V LPL+ VL+A + AT A VL+   ++   SA  D      EG    Q++ FK+L G AYK LCDFM++ E      +   CLP  RP      L+   +W+  M ++++  G ++WV K +EQ
Sbjct:  494 FVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHRPRVHEPILS-EFDWRSHMYKIKNGVG-YSWVRKSSEQ 660
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BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.860e-9
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:  606 FRLRFLCEHSLEEVPCGPDGLGYPIE--QLKDWVKQCAPLVKASLWILRVAVGTVSNVD-LPLNQVLDAAVKATG---AVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAE 983
            +R+RFLC + L    CG DGLGY +E    ++W+K C P++K SLW+LRV +  V+  D LP++ V++   +  G   A +L  +  E   S+  D          V++    + + GTAY  L  ++Q+ E
Sbjct:  954 YRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQD---------LVDKVNAQEQVFGTAYAELAKWVQQRE 1076
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKS5_ECTSI2.260e-5352.73LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LK68_ECTSI4.820e-2237.99LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JR01_9PHAE3.060e-2036.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPJ1_9PHAE1.860e-933.33Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:26739..29203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2102
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17013.1prot_C-linearis_contig96.17013.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 27639..28001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.6925898-UTR-C-linearis_contig96:26738..276381622930819.6925898-UTR-C-linearis_contig96:26738..27638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 26739..27638 -
1690881266.3011076-UTR-C-linearis_contig96:26738..276381690881266.3011076-UTR-C-linearis_contig96:26738..27638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 26739..27638 -
1622930819.7223902-UTR-C-linearis_contig96:28001..281151622930819.7223902-UTR-C-linearis_contig96:28001..28115Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28002..28115 -
1690881266.322018-UTR-C-linearis_contig96:28001..281151690881266.322018-UTR-C-linearis_contig96:28001..28115Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28002..28115 -
1622930819.7359967-UTR-C-linearis_contig96:28326..285071622930819.7359967-UTR-C-linearis_contig96:28326..28507Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28327..28507 -
1690881266.3336701-UTR-C-linearis_contig96:28326..285071690881266.3336701-UTR-C-linearis_contig96:28326..28507Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28327..28507 -
1622930819.7522614-UTR-C-linearis_contig96:28659..292031622930819.7522614-UTR-C-linearis_contig96:28659..29203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28660..29203 -
1690881266.3437793-UTR-C-linearis_contig96:28659..292031690881266.3437793-UTR-C-linearis_contig96:28659..29203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 28660..29203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.7085972-CDS-C-linearis_contig96:27638..280011622930819.7085972-CDS-C-linearis_contig96:27638..28001Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 27639..28001 -
1690881266.311787-CDS-C-linearis_contig96:27638..280011690881266.311787-CDS-C-linearis_contig96:27638..28001Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 27639..28001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17013.1

>prot_C-linearis_contig96.17013.1 ID=prot_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp
MGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPS
TPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ
AHCRENGDAASAQSARPPIS*
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mRNA from alignment at C-linearis_contig96:26739..29203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2465bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)
GCTCAAAAATTTCAAAACTTGAGAAATTTGGAGGTGAGAAAGAAGGCTCA
GCGGCCGGCGGCAGACTAAATCCTATATGATGGCTAGAGATGGCCATGCT
CAATGCTGGCGACACAACAAGAAACCTAGCCTCGGCCGAGATATCAGTGT
CTTATGAGCGGGCCGATACTGTACAGGTCGAATTTGTCAGAACTCCGTTA
TTTAGTGGTTGGTTGTGGGACGTCGGATAAGTTCAAAACACGATGGAATT
CCAATTTTCAGTTTGAAAAGTGGTGTAGTATCCGGGAACAAAATATCCAC
TAATCCGACTCCACATCGGTCTGATCAGGGTAGTTCTGGTCGTCACCCCA
GAAGTCGTCGTCGGACCAGTCGTGATAGCGCCTGGGCGCGTCACTGGCCA
TCAAAGAGCGGGGGCTCGGGGGCTTAGCCTCCTCGGTGCCGCCCGTATCC
TCCGACTCCGTGGTCTCGGGCATGGCCTCCTCCTCCACCACCACGCATGG
GGCAGCGGCCTCTTCGTCGGCGCCGCCCGTACCCTGCTTTTGAGGTTAGG
CGTTTGAGGTTGGGCATTTCAGGTGAGGCCTTCAGATTGGGTTTCCAGGT
GGGGTTTTCAAGTTGGGCGCACGCTTTGCGTGACAAAGCGCCGTTGCTCA
CTATCCCGCCTACGAGCTAGTAGCTGGACGACTTACTTTGTTGAAGGCGG
GGCTTGTCTCGAACCTGCGAAAGCTTGAGTCTGCCCGATGTCGGGTTGCA
CCACAAGTTTCGCCTCCGTTTCCTTTGTGAGCACAGCCTCGAAGAAGTAC
CATGTGGCCCCGACGGGCTTGGGTACCCTATCGAGCAGCTGAAGGATTGG
GTCAAGCAGTGCGCCCCTTTGGTGAAGGTGAGTTTTGGCATGGACCTGGT
AGGTCTTCTTGCTCGCTTGGTTTGTTTCGTTTCTCTCTGGTGCTCCTTGA
GCCCATACCGCGCATTTGTTGGCTCTTCGTTTACGTTCGTGGTAATGCCT
GGCGTCGCAGGGGCTTGTGCTAGAGCGATTGCCTCACGTTGTTCCCTATC
GTCGCCTTTATGTTCGTGCTCGCTTGCGTTTTCCTTAGGCGTCGTTGTGG
ATCTTGCGGGTGGCAGTTGGCACCGTGTCAAATGTGGACCTGCCCCTGAA
CCAAGTGCTGGATGCTGCTGTGAAAGCAACCGGTGCAGTAGTGCTGGACG
GGATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATG
TTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCA
GGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGT
CAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACC
CGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCA
AGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGC
AGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGA
CCTCCGATCTCATGATAAAAATGAGATTGGATGAATCAGGTGATCTCTAT
AGTGGTATTATTTGCGGTCAGATTCCGCCTTGCAGGGGAAGACCGGTGCC
GGTAGGGGGAAGCGGAGAAGTTTCCGCCACGAACGGGTGCACTGTAGATT
GTCATTTTGCGAGATGAACTGGCTAGGGCCGTTGCTTGAAAGGTGAAAGA
GGGCGTCCGCTGTCTTGTAGGATGACATTTCTAGTGCTCGGTGTTGTAGT
TGCAGGGAGGTGTCGGCATAACAAGTCACCGAGGAATCTCACTTTCTTTT
TTTTTGTTTTGTACTGACTTTCGGCTGTCACAGTTTCGATTCTGCTTGAG
CAGATATGTGAGGATTCGAGGAGGGCGTTGGTGGGCGTGCTTCGGTGGTA
GCAGGTTGAGCGAGTGCTACTGTGCCTCTTCAGGTTGTTGATAGTTTTCT
TGAGACCTAAGAAAGGTCGTGGACAGGCTGGTTTTCCTTGAAAACGTCCT
TGTCGGCGCGGTTATTCCCCTCGCGGATCTCTAGGATTCTCTTTGTTCCG
AGTTCTGGAACTTCTGTGAGAAATGTCAGTTTTTACATGGGCGTGGGTTT
AGCCAGGTAGACAAAAGTTCGAACAGAAAGGCGTGCTTTGCTACCCAATT
TGAGTGTCGAACCCGGCCCAACTCCCGAGGCGAGTGCCTGGATGTCACGC
CTCACCGAGACAAAAGTACAGGTTGTTGTCACGCGCTGAGCGTTAGCTAC
CGTCAAGCTTTGTCCGAGGAGCGCTTCATGCAAGCTGTGGAGAAACTCTC
CCGACGTTGTGGATCGTGGCGCAGCTACTCAAGAGATCGTCTATGTCTGC
AATTGGATCCGCAGGAACCACCGAGCCATTGACGACGATGACACAACCAT
TCAGCGGAAGACAAC
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Coding sequence (CDS) from alignment at C-linearis_contig96:26739..29203-

>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)
ATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATCCGGTCCCGATGTT
TGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTTAAAGATCTGCAGG
GCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGAAGCCGAGCCGTCA
ACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTCGCCCAATCACCCG
ACCCACCGATCTCACCCCACGTGTTAACTGGAAGGATAGTATGGTTCAAG
TGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAAAAAGAACGAGCAG
GCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGCAATCGGCTCGACC
TCCGATCTCATGAATGGGCACGGAGGTCCCTAACTCCGCCCACAATGATC
CGGTCCCGATGTTTGCCGAGGGGGCGACGGTGGAACAGAAACAGCGGTTT
AAAGATCTGCAGGGCACGGCTTACAAGTTCCTGTGCGACTTCATGCAGGA
AGCCGAGCCGTCAACTCCTCGGCGTTTGTCGGGGTGTCTTCCTTGCTGTC
GCCCAATCACCCGACCCACCGATCTCACCCCACGTGTTAACTGGAAGGAT
AGTATGGTTCAAGTGAGGAGTCGCAACGGGCGGTGGGCGTGGGTCTTGAA
AAAGAACGAGCAGGCACACTGTCGCGAAAACGGAGACGCTGCGTCAGCGC
AATCGGCTCGACCTCCGATCTCATGA
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