mRNA_C-linearis_contig96.17013.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 209 bits (533), Expect = 2.260e-53 Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 3 Query: 543 RRGLSRTCESLSLPDVGLHHKFRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPRRLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRN-GRWAWVLKKNEQAHCRENGDAASAQSARPPIS 1199
R G R ++LS ++G H KFR+ FLC H L EVPCGP G G+PI+ KDWVKQ PL++ SLW+LRVAVG VSNVDLPLN+VL A V ATGA +L+G+G +VP+ + +P+F+EGAT + FKDL+G +Y+ LC FM++ E S P+ LSGCLPC R + V+W+D MVQVR+ + GR AWVLK NE+A RE+G A + A P+S
Sbjct: 960 RAGWDRWTKALS--EMGFH-KFRVHFLCGHDLSEVPCGPGGRGFPIKHPKDWVKQWLPLMQVSLWMLRVAVGAVSNVDLPLNKVLGAFVMATGAELLEGVG-KVPDRISSAALPVFSEGATRAEMDGFKDLRGKSYEGLCKFMRDVESSPPQCLSGCLPCHRTLAV-------VDWRDHMVQVRNPSTGRRAWVLKTNEKAFLREHGGAPATAGA--PVS 1166
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 113 bits (283), Expect = 4.820e-22 Identity = 68/179 (37.99%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
F L FLCE E+PCGP G G+ + PL++ +LW++++AVGTV++VDLPL+ VL+A + AT A VL+ ++ SA D EG Q++ FK+L G AYK LCDFM + E R CLP RP + +W+ M +++ G ++WV K +EQ
Sbjct: 1963 FVLVFLCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVDLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMTKEEFGPEEARCESCLPWYRPRVH-EPIPSEFDWRSHMEMIKNGIG-YSWVRKSSEQ 2129
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.060e-20 Identity = 66/179 (36.87%), Postives = 100/179 (55.87%), Query Frame = 3 Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIEQLKDWVKQCAPLVKASLWILRVAVGTVSNVDLPLNQVLDAAVKATGAVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSTPR-RLSGCLPCCRPITRPTDLTPRVNWKDSMVQVRSRNGRWAWVLKKNEQ 1139
F L LCE E+PCGP G G+ + PL++ +LW++++AVGTV++V LPL+ VL+A + AT A VL+ ++ SA D EG Q++ FK+L G AYK LCDFM++ E + CLP RP L+ +W+ M ++++ G ++WV K +EQ
Sbjct: 494 FVLVILCERDFSEIPCGPQGKGFRVHNPGSLFNTLKPLLQGALWLVKIAVGTVASVYLPLHDVLEAFLHATAAEVLEAAPSQFSPSATLD------EG----QQEGFKELHGPAYKALCDFMRKEEFGPEEAQCCPCLPWHRPRVHEPILS-EFDWRSHMYKIKNGVG-YSWVRKSSEQ 660
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.860e-9 Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 3 Query: 606 FRLRFLCEHSLEEVPCGPDGLGYPIE--QLKDWVKQCAPLVKASLWILRVAVGTVSNVD-LPLNQVLDAAVKATG---AVVLDGMGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAE 983
+R+RFLC + L CG DGLGY +E ++W+K C P++K SLW+LRV + V+ D LP++ V++ + G A +L + E S+ D V++ + + GTAY L ++Q+ E
Sbjct: 954 YRIRFLCAYDLTAGTCGKDGLGYKVEIQGWQEWLKACLPVIKVSLWLLRVGISVVTRADVLPVDGVIETLEEVAGEEAAGILGEIDLEGRRSSGQD---------LVDKVNAQEQVFGTAYAELAKWVQQRE 1076 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17013.1 >prot_C-linearis_contig96.17013.1 ID=prot_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp MGTEVPNSAHNDPVPMFAEGATVEQKQRFKDLQGTAYKFLCDFMQEAEPSback to top mRNA from alignment at C-linearis_contig96:26739..29203- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2465bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:26739..29203- >mRNA_C-linearis_contig96.17013.1 ID=mRNA_C-linearis_contig96.17013.1|Name=mRNA_C-linearis_contig96.17013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig96:26739..29203- (Chordaria linearis ClinC8C monoicous)back to top |