mRNA_C-linearis_contig96.17012.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17012.1
Unique NamemRNA_C-linearis_contig96.17012.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 4.800e-76
Identity = 137/156 (87.82%), Postives = 142/156 (91.03%), Query Frame = 1
Query:   13 AAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARGVDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            A A GSVERTVA+LS+GSVDIDGGYGD GRTPLMAA TMGYLRVVRVLLRLG RVSVADN GATALHLSIVNKHLAVSKALVKAGA VEARGVDGTPLHVAAAKGFHKGMV LIH  GANVDSE+E  AT L+ISARQGRLEDVR+LVGAK NPLL
Sbjct:   11 APASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHA-GANVDSEQEGRATPLYISARQGRLEDVRILVGAKVNPLL 165          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.390e-63
Identity = 107/120 (89.17%), Postives = 111/120 (92.50%), Query Frame = 1
Query:   13 AAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARGVDGTPLHVAAAKGFHKGMVRLIHEEGAN 372
            AAA GSVERTVA+LS+GSV+IDGGYGD GRTPLMAASTMGYLRVVRVLLRLG RVSVADN GATALHLSIVNKHLAVSKALVKAGA VEARGVDGTPLHVAAAKGFHKGMV LIH  G +
Sbjct:   11 AAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGGCS 130          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 4.280e-61
Identity = 113/151 (74.83%), Postives = 120/151 (79.47%), Query Frame = 1
Query:   13 AAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARGVDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAK 465
            AAA GSVERTVA+LS+GSVDIDGGYGD GRTPLMAASTMGYLRVVRVLLR G RVSVADN GATALHLSIV KHLAVS+ALVKAGA VEARGVDGTPLHVAAAKGFHKGMV LIH +  +  S       +   SA +     VRVL G K
Sbjct:   11 AAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHVDAVHAIS-------WCWPSALEKSKPIVRVLPGLK 154          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.930e-59
Identity = 119/157 (75.80%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   10 AAAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARGVDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            A  ARGSVERTVALLSRGSVDIDG YGDAGRTPLM ASTMGYLRV RVLLRLG  VSVADN GATALHLS+ N+HLAVSKAL+KAGA+VEAR VDG              MV LIH  GANVDSE+ESGAT L+ SARQGRLEDV+VLVG KANPL+
Sbjct:    2 ATTARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHA-GANVDSEQESGATPLYTSARQGRLEDVKVLVGTKANPLV 143          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 5.760e-37
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 1
Query:   19 ARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEAR-GVDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            A GS++ T+A        ID G GD  +TPLM AS +G  RVVR LLR G  VSVAD+ G TALH S+ + HLAVSK L++AGAD+EAR G   TPLHVAA KGF +GM  L+       DS  + GAT L ++A  GRLE VRVL+ A ANPLL
Sbjct:    8 ASGSIDPTIATTG-----IDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM-------DSRLDDGATPLFLAASDGRLEAVRVLLRANANPLL 150          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.700e-37
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 1
Query:   13 AAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARG---------VDG-TPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            AA+ GSVERT+ LLS G  +ID    + G T LM A+  GYLR+VRVLLR G  VSV+ + G TALH +I  ++LAV+KAL+KAGA+VEA+          V G TPLH+AA +GF +GMV LI+  GANVDS    G+T ++I+A  G LE V +L   KANPLL
Sbjct:   24 AASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINA-GANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLL 188          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.040e-34
Identity = 84/136 (61.76%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   94 AGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEAR-------GVDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            AG      ASTMGYLRVVRVLLRLG RVS ADN GATALHLSIVNKHLAVSKALVKAGAD+EAR       GV  TPLHVAAAKGFHKGMV LIH                            V+  VGAKANP+L
Sbjct:   30 AGPRLWWVASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHA--------------------------GVKGFVGAKANPIL 139          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: UPI001EE61C32 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61C32)

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-9
Identity = 44/137 (32.12%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   25 GSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALV-KAGADVEARGVDG-TPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQG 429
            G++E    +LS+  +DID   G  GRTP+M A+  G++ +  +L R+G  +S+    G T LHL+    ++ + K ++ K    V  RG++G TP+ +AA  G H+G+++++ + G +V     +G   LH + R G
Sbjct:   40 GNIEIVKYILSQDFIDIDS-RGKFGRTPVMKAAWGGHVNLFDLLERVGADLSLVSEQGDTILHLACHRDNVPMVKHILSKHIVGVNCRGMNGRTPVMIAAMYG-HRGVLKVLVDNGGDVSLVDSNGENVLHAACRGG 174          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.970e-9
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  232 HLAVSKALVKAGADVEAR------GVD----GTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPLL 480
            +LAV+KALVKAGAD+EA+      G D     TPLH+AA   F +    L+   GANV+   ++GAT L++SA  GRL  VR+L+  KANP L
Sbjct:   15 NLAVTKALVKAGADLEAKAACFTLGPDLTEGNTPLHLAAGGAFGEITTALVGA-GANVNCRLKNGATPLYLSACCGRLGAVRILIRGKANPSL 106          
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Match: A0A3Q2YJ70_HIPCM (Cyclin dependent kinase inhibitor 2C n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2YJ70_HIPCM)

HSP 1 Score: 58.5 bits (140), Expect = 1.060e-7
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  109 LMAASTMGYLRVVRVLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARG--VDGTPLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRVLVGAKANPL 477
            L +AS  G L  V +LL+ G  V+  +    TAL +  ++   AV +AL+ A AD   R   +  T  H AA +GF    VR +   GA+V+   E G   LH++A+ GR+E VRVLVGA A+PL
Sbjct:   11 LSSASANGNLPEVLLLLQSGASVNGRNIFKRTALQVVKLSS-TAVVEALLDAEADPNLRDPVLGLTVTHDAAREGFAD-TVRALLAHGADVNLADERGNLPLHLAAKWGRVEAVRVLVGATADPL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL58_9PHAE4.800e-7687.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G449_ECTSI4.390e-6389.17EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI4.280e-6174.83EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1W5_9PHAE1.930e-5975.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI5.760e-3754.84EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE6.700e-3753.01Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5JNS0_9PHAE2.040e-3461.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EE61C322.700e-932.12serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6H5K5A5_9PHAE2.970e-948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3Q2YJ70_HIPCM1.060e-740.00Cyclin dependent kinase inhibitor 2C n=1 Tax=Hippo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:26022..26501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue6.9e-49
Seed eggNOG ortholog2880.D7G449
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.6511257-CDS-C-linearis_contig96:26021..265011622930819.6511257-CDS-C-linearis_contig96:26021..26501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 26022..26501 +
1690881266.2890093-CDS-C-linearis_contig96:26021..265011690881266.2890093-CDS-C-linearis_contig96:26021..26501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 26022..26501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17012.1prot_C-linearis_contig96.17012.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 26022..26501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17012.1

>prot_C-linearis_contig96.17012.1 ID=prot_C-linearis_contig96.17012.1|Name=mRNA_C-linearis_contig96.17012.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=160bp
ANCAAAARGSVERTVALLSRGSVDIDGGYGDAGRTPLMAASTMGYLRVVR
VLLRLGTRVSVADNAGATALHLSIVNKHLAVSKALVKAGADVEARGVDGT
PLHVAAAKGFHKGMVRLIHEEGANVDSEKESGATYLHISARQGRLEDVRV
LVGAKANPLL
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mRNA from alignment at C-linearis_contig96:26022..26501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17012.1 ID=mRNA_C-linearis_contig96.17012.1|Name=mRNA_C-linearis_contig96.17012.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at C-linearis_contig96:26022..26501+ (Chordaria linearis ClinC8C monoicous)
GCAAACTGTGCTGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCCCT GCTTTCTCGAGGGTCGGTGGACATCGACGGAGGCTACGGTGATGCGGGCC GGACCCCTCTGATGGCGGCCTCCACCATGGGATACTTGCGGGTCGTAAGG GTCCTCTTGAGACTGGGAACCAGAGTGTCCGTGGCGGACAATGCCGGTGC GACTGCTCTACACCTGTCGATTGTCAACAAACACCTGGCCGTCAGCAAGG CTCTGGTCAAGGCCGGTGCGGACGTTGAAGCGCGTGGTGTAGACGGTACG CCGCTTCACGTTGCCGCGGCGAAAGGATTCCACAAAGGAATGGTGAGGCT GATCCACGAGGAGGGTGCGAATGTCGACAGTGAGAAAGAAAGCGGAGCGA CATATCTGCACATTTCGGCACGACAAGGGAGACTTGAAGATGTCAGGGTT CTCGTTGGGGCGAAGGCGAATCCGCTCTTG
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Coding sequence (CDS) from alignment at C-linearis_contig96:26022..26501+

>mRNA_C-linearis_contig96.17012.1 ID=mRNA_C-linearis_contig96.17012.1|Name=mRNA_C-linearis_contig96.17012.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at C-linearis_contig96:26022..26501+ (Chordaria linearis ClinC8C monoicous)
GCAAACTGTGCTGCCGCAGCCCGTGGTTCCGTCGAGCGTACGGTTGCCCT
GCTTTCTCGAGGGTCGGTGGACATCGACGGAGGCTACGGTGATGCGGGCC
GGACCCCTCTGATGGCGGCCTCCACCATGGGATACTTGCGGGTCGTAAGG
GTCCTCTTGAGACTGGGAACCAGAGTGTCCGTGGCGGACAATGCCGGTGC
GACTGCTCTACACCTGTCGATTGTCAACAAACACCTGGCCGTCAGCAAGG
CTCTGGTCAAGGCCGGTGCGGACGTTGAAGCGCGTGGTGTAGACGGTACG
CCGCTTCACGTTGCCGCGGCGAAAGGATTCCACAAAGGAATGGTGAGGCT
GATCCACGAGGAGGGTGCGAATGTCGACAGTGAGAAAGAAAGCGGAGCGA
CATATCTGCACATTTCGGCACGACAAGGGAGACTTGAAGATGTCAGGGTT
CTCGTTGGGGCGAAGGCGAATCCGCTCTTGGCAAACTGTGCTGCCGCAGC
CCGTGGTTCCGTCGAGCGTACGGTTGCCCTGCTTTCTCGAGGGTCGGTGG
ACATCGACGGAGGCTACGGTGATGCGGGCCGGACCCCTCTGATGGCGGCC
TCCACCATGGGATACTTGCGGGTCGTAAGGGTCCTCTTGAGACTGGGAAC
CAGAGTGTCCGTGGCGGACAATGCCGGTGCGACTGCTCTACACCTGTCGA
TTGTCAACAAACACCTGGCCGTCAGCAAGGCTCTGGTCAAGGCCGGTGCG
GACGTTGAAGCGCGTGGTGTAGACGGTACGCCGCTTCACGTTGCCGCGGC
GAAAGGATTCCACAAAGGAATGGTGAGGCTGATCCACGAGGAGGGTGCGA
ATGTCGACAGTGAGAAAGAAAGCGGAGCGACATATCTGCACATTTCGGCA
CGACAAGGGAGACTTGAAGATGTCAGGGTTCTCGTTGGGGCGAAGGCGAA
TCCGCTCTTG
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