mRNA_C-linearis_contig96.17058.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17058.1
Unique NamemRNA_C-linearis_contig96.17058.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:639329..639954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size626
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.291251-CDS-C-linearis_contig96:639328..6397901622930819.291251-CDS-C-linearis_contig96:639328..639790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 639329..639790 +
1690881266.1560495-CDS-C-linearis_contig96:639328..6397901690881266.1560495-CDS-C-linearis_contig96:639328..639790Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 639329..639790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930819.3111303-UTR-C-linearis_contig96:639790..6399541622930819.3111303-UTR-C-linearis_contig96:639790..639954Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 639791..639954 +
1690881266.1729925-UTR-C-linearis_contig96:639790..6399541690881266.1729925-UTR-C-linearis_contig96:639790..639954Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 639791..639954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17058.1prot_C-linearis_contig96.17058.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 639329..639790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17058.1

>prot_C-linearis_contig96.17058.1 ID=prot_C-linearis_contig96.17058.1|Name=mRNA_C-linearis_contig96.17058.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
VARSRYRRHRQGSQNEERLRHTRHGGDKRGVNPPTPPCPASQCPASQGKI
RPKLTAVERPDFLRSSRTCNREDSIYTVPLFRERLMEGNRRGGMQQIPKE
GKGWSASPCCRVARPTKVTAKNKNATLTCVVVGPDAGGAFRGKVVCDAVG
RSF*
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mRNA from alignment at C-linearis_contig96:639329..639954+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17058.1 ID=mRNA_C-linearis_contig96.17058.1|Name=mRNA_C-linearis_contig96.17058.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=626bp|location=Sequence derived from alignment at C-linearis_contig96:639329..639954+ (Chordaria linearis ClinC8C monoicous)
GTCGCACGGTCTCGGTACCGCCGACACAGGCAAGGTAGCCAAAACGAAGA
AAGGTTAAGGCACACGCGCCACGGCGGGGACAAGCGGGGCGTGAACCCCC
CAACACCGCCGTGCCCGGCTTCTCAGTGCCCGGCTTCTCAGGGGAAAATA
CGGCCGAAACTCACTGCTGTCGAGCGTCCCGACTTTCTACGGAGCTCCCG
GACCTGCAACAGGGAAGATTCGATTTACACCGTGCCCCTATTCAGGGAGC
GGCTCATGGAGGGGAACCGACGAGGAGGCATGCAACAGATACCAAAAGAG
GGGAAGGGCTGGTCGGCCTCTCCGTGTTGTCGCGTTGCACGCCCAACGAA
AGTCACCGCAAAAAACAAAAACGCGACCCTAACGTGTGTGGTTGTCGGGC
CAGATGCGGGGGGGGCCTTCCGCGGAAAGGTCGTCTGCGACGCAGTTGGT
CGTTCATTTTGAGCGGCGGCGCGGCCACTCGCGAGCGGTTGCGGGTCTTA
TCTACTGCGTTCAGAAGCCAGGTGGTGAAGAGTCGGGGGAACAGCAGCGT
ACACACAAAACGAGCACTTCTCACCTCGTCTGCGTGGCCGCCGAGCAACG
CCGTAACGGTCCTCGCCGCGTTCAGT
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Coding sequence (CDS) from alignment at C-linearis_contig96:639329..639954+

>mRNA_C-linearis_contig96.17058.1 ID=mRNA_C-linearis_contig96.17058.1|Name=mRNA_C-linearis_contig96.17058.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at C-linearis_contig96:639329..639954+ (Chordaria linearis ClinC8C monoicous)
GTCGCACGGTCTCGGTACCGCCGACACAGGCAAGGTAGCCAAAACGAAGA
AAGGTTAAGGCACACGCGCCACGGCGGGGACAAGCGGGGCGTGAACCCCC
CAACACCGCCGTGCCCGGCTTCTCAGTGCCCGGCTTCTCAGGGGAAAATA
CGGCCGAAACTCACTGCTGTCGAGCGTCCCGACTTTCTACGGAGCTCCCG
GACCTGCAACAGGGAAGATTCGATTTACACCGTGCCCCTATTCAGGGAGC
GGCTCATGGAGGGGAACCGACGAGGAGGCATGCAACAGATACCAAAAGAG
GGGAAGGGCTGGTCGGCCTCTCCGTGTTGTCGCGTTGCACGCCCAACGAA
AGTCACCGCAAAAAACAAAAACGCGACCCTAACGTGTGTGGTTGTCGGGC
CAGATGCGGGGGGGGCCTTCCGCGGAAAGGTCGTCTGCGACGCAGTTGGT
CGTTCATTTTGAGTCGCACGGTCTCGGTACCGCCGACACAGGCAAGGTAG
CCAAAACGAAGAAAGGTTAAGGCACACGCGCCACGGCGGGGACAAGCGGG
GCGTGAACCCCCCAACACCGCCGTGCCCGGCTTCTCAGTGCCCGGCTTCT
CAGGGGAAAATACGGCCGAAACTCACTGCTGTCGAGCGTCCCGACTTTCT
ACGGAGCTCCCGGACCTGCAACAGGGAAGATTCGATTTACACCGTGCCCC
TATTCAGGGAGCGGCTCATGGAGGGGAACCGACGAGGAGGCATGCAACAG
ATACCAAAAGAGGGGAAGGGCTGGTCGGCCTCTCCGTGTTGTCGCGTTGC
ACGCCCAACGAAAGTCACCGCAAAAAACAAAAACGCGACCCTAACGTGTG
TGGTTGTCGGGCCAGATGCGGGGGGGGCCTTCCGCGGAAAGGTCGTCTGC
GACGCAGTTGGTCGTTCATTTTGA
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