mRNA_C-linearis_contig96.17025.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17025.1
Unique NamemRNA_C-linearis_contig96.17025.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:129136..132492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size366
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17025.1prot_C-linearis_contig96.17025.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 129136..132492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.747641-CDS-C-linearis_contig96:129135..1292371622930818.747641-CDS-C-linearis_contig96:129135..129237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129136..129237 -
1690881265.9327972-CDS-C-linearis_contig96:129135..1292371690881265.9327972-CDS-C-linearis_contig96:129135..129237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129136..129237 -
1622930818.7719488-CDS-C-linearis_contig96:129670..1297751622930818.7719488-CDS-C-linearis_contig96:129670..129775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129671..129775 -
1690881265.9437726-CDS-C-linearis_contig96:129670..1297751690881265.9437726-CDS-C-linearis_contig96:129670..129775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129671..129775 -
1622930818.8048668-CDS-C-linearis_contig96:129940..1300301622930818.8048668-CDS-C-linearis_contig96:129940..130030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129941..130030 -
1690881265.9544177-CDS-C-linearis_contig96:129940..1300301690881265.9544177-CDS-C-linearis_contig96:129940..130030Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 129941..130030 -
1622930818.8217463-CDS-C-linearis_contig96:132423..1324921622930818.8217463-CDS-C-linearis_contig96:132423..132492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 132424..132492 -
1690881265.9654655-CDS-C-linearis_contig96:132423..1324921690881265.9654655-CDS-C-linearis_contig96:132423..132492Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 132424..132492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17025.1

>prot_C-linearis_contig96.17025.1 ID=prot_C-linearis_contig96.17025.1|Name=mRNA_C-linearis_contig96.17025.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
GNAGDGNCLSHAILNGMRVSKDLISAAPRTHPSTPQQKNLGDMDISSTPP
SDEDFESPVTRRTSRASTQRFPLSPASPNKSTTGSGARSSGKSGKKRRLS
FGSEQRGGGGGGGGGGRRRRR*
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mRNA from alignment at C-linearis_contig96:129136..132492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17025.1 ID=mRNA_C-linearis_contig96.17025.1|Name=mRNA_C-linearis_contig96.17025.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3357bp|location=Sequence derived from alignment at C-linearis_contig96:129136..132492- (Chordaria linearis ClinC8C monoicous)
GGCAACGCTGGTGATGGGAATTGCCTCTCCCACGCGATTCTCAATGGAAT
GCGAGTTTCCAAGGACCTGGTGAGAGAATATTCCCGTGTGATATGTATAC
CTGAGCAGCAGCAGCCTGCATGTAGGCGCTCTGTTGTTGTAGACTAGACT
TACTTATGCAAGTTGTATTTTTGTATTTTTTAAATTAATCCCGAAAGGTC
CCATGTTTGAAGGTCCGAGTGTACGCAACCTGTGTGTGTGCTAGCTCCCG
CAAGCATTGACAACCTACACTAATGCATGCAGTCTCGACTGCTGTGTGGC
GTATGTACAACAGCCCAACACTGCTGCTGCTGTTTCTTCCTCTCGCTGTT
GTTGGAAAGGTCCGAATGTACGCAACCTGTCTGTGGCCTCCAGAGAGAGA
GAAAGAAAAGAGAGAGAGAAAGAAAAAAAGGTGCCCGCAGTTTTCTGATT
GGTCAATTTTTTTGACAGGAAATTTCCTTTGGCCGAAAATTCCATGGTCG
ACCGATGACGTCAGCCACGGTCGAGAAGTCACCTCCCGGGAAAATTCAAA
AATTTCAAATTCGCCGTGATTGGCTGATTCATAATGATTGATGACAGTAT
CATCATCATTCAAGGGAATCGCCGAACGCATAACCCTGGACCACTGAAAG
AGAGAAAGAAAAGGTGCCCGCAGTTTTCTGATTGGTCAATTTTTTTGACA
GGAAATTTCCTTTGGCCGAAAATTCCATGGTCGACCGATGACGTCAGCCA
CGGTCGAGAAGTCACCTCCCGGGAAAATTCAAAAATTTCAAATTCGCCGT
GATTGGCTGATTGATGACAGTATCATCATCATTCAAGGGAATCGCCGAAC
GCATAACCCTGGACCACTGAAATTGCACTATGCACCTTCACCGATCCACG
CTCGAGAAACACGAAAACCTAAAAGCCAAACAACAGTAGTCCCGCGGACT
ATTCGACACGAGAGGGTACGAAAGAGGGCCCGTAGCAGACATAATGATTT
GTCCAAAAAATTACGTAAGACCCACCCTGACCGACCACACCCACACGAAG
GACGGACGGACGGACGGACGGACTTTGAACAATGGCATCCACGCACAGCG
GGGACAAATCTAAACGGAAGATCGTCGCCAGAAAACACCAACACACACTC
AGTACTCCAACTCTCCCTTCTCTTCCTCTCTCTTTCGAACACCGGGCAAT
GACTCCCTCTTGCGGTTCCACTAAACACCAAGTAATAACTGCTGTCAAGA
ACAACAGCAGGATGGATCATCACCGCCTGATGTGATCACCCTCCTGAGAG
AGACTCAACCTCAACATGTTTCTGCTGTGTGCGTATCCTCCGAACCTTCC
TCGTGTGATTCTTCAACATGTGCTGCTGTGTCCGTCTCCGCGGAACCTTC
TTCATTTGATCGAGGCGGAGGTGGCAGTCATTGAAAAAAAATCCGGAGGA
TTCACCTACGCCTCGTGATAGTTCTTCGGTGCATGTGACCTCCGAAAACT
CGTTTGAATTTGTGTATCACCCACGTGGGTACCCTCGATTCCTGCCCTCC
GCGCCCCCACCGATTTCACACACCCATCTCCATCAACAAGCACAATAGAC
CCACTGTCACGAAGACTACGGGCGGGCAGGTTCGTATTGCTTGACACCTC
TCTGCATTCCGCGCGCGAGGGAGAGTTTCATTTGGACAACCCACGGAGAG
AGAAGGGAGAGAGAGATAAAATATGTACCAGGTAGTTTCACCGAGCCATG
TGTGTGTTTGAACAACAGCAGACGCAAGGCCGCACACCCGCGTGCCCAGC
CTAACGAGCGTTTGTCGTGATGATTCATCTAGTACTGTTGTTCCATTAGC
ATGCCTCTCTTGCCCATAACCTGCACTCGCAGCGGCGACAACCAACACCA
CCAGTTGAATTTCCAAACGTTCAAACTTGCACGCCGGAGATATGACGCTT
CCCTTTGTCATCGCATCTCTTGTGCCGCAGCACCCAGAAAATAGCCAACC
CGAGCAGTGCTCTGAGAGTTCAGGGGTAGACTTCGACCTCGGTTTTCTCC
TTTCCAGATTTGTGTGTGTGTGTCGTCCCTCGGCCGGCACACAACTACGT
TTGTTTTTGCAGCAGTGGTAGATTCGGTTGCGCTCACCACACCCCCCAGA
GAGGGTAGAGTAGTACTCACGCCGCCATGAAGAGAACACGATGACTCGTC
TACAATACGTAGCGTTCGACGTGACTCTCAGTTGAATGCCACGCACATGT
GGCGTCTCGGCGTGCTTGTCGCGTGAACAACATTGACCCTGGTTCAATGC
AGAACGCGGCGAGAGTGGATCGGTATAGACTACATGTATGTAGTCAAACA
CACGTACGTGCGCGCCGAGTCCATCGAGTGGACTTCACTCATACACAGGC
AAGCTGGTTGAACTAGATGCCCATTTGCCTCCGCGCATCCGATCGCCTGC
GCTGGTTCGTAGATATCGGCAGCCCCCAGGACGCACCCATCCACCCCCCA
ACAGAAGAATCTGGGCGACATGGACATCTCTAGCACGCCACCGAGCGATG
AGGTAAGAGCAGCGCATGAGACGTAGAAGCATATAGTTTCTATTAGGCTT
GTGGTGCTCACATCGTGTCATGAACAATGCTCGAGATCTTTTCTGTACCC
AACAGACATAGTCCACTATGCGACCCTCACGGTACGCCGTGCGCCTCTGC
TGTCTTCCATCCCATAGGACTTCGAATCGCCGGTGACGAGGAGGACAAGC
AGGGCGTCCACCCAACGCTTCCCACTATCACCCGCATCGCCCAACAAGAG
TACAACGGGTTCTGGCGCACGGGTGAGGAGGATCAACGCTAATATCCACC
ATCACACACAACTGTATGTAGTTCACTGATCCGTGGTCAAAGAGTTGTTG
CTTCCTTTAGGCGTTTTGATTCGGCATTTCTTGGGAATTTCAGTTCTGTA
TGATTACGATGCCCTCCCTAGCCTGTTTCATTTACGCCCTCTCATCTACC
AACATGGATTGCGCCGACGCCCACCACAAGTTCGCCTTCCGTCATGGGTT
ACGTATGGACATGACAACGTGCTTTCAATATGGTGCCGGCACACACGAAG
ATCATAGGAACGTTCTTGTGCAAGCAGATAACAAGTGGGCTGAGTTGTGG
GTGTAATTTTCAGTTGATTTCAGTCGGACAGAGTGACAATAGTAAAGGCT
CTCCAATTTTTGTGAGTGTCGACACTCATCCCCACCCCTTCGAAACTACG
ACCAGTCATCCGGGAAATCCGGGAAGAAGCGCCGTCTGAGCTTCGGTTCC
GAACAGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAG
ACGATGA
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Coding sequence (CDS) from alignment at C-linearis_contig96:129136..132492-

>mRNA_C-linearis_contig96.17025.1 ID=mRNA_C-linearis_contig96.17025.1|Name=mRNA_C-linearis_contig96.17025.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig96:129136..132492- (Chordaria linearis ClinC8C monoicous)
GGCAACGCTGGTGATGGGAATTGCCTCTCCCACGCGATTCTCAATGGAAT
GCGAGTTTCCAAGGACCTGGGCAACGCTGGTGATGGGAATTGCCTCTCCC
ACGCGATTCTCAATGGAATGCGAGTTTCCAAGGACCTGATATCGGCAGCC
CCCAGGACGCACCCATCCACCCCCCAACAGAAGAATCTGGGCGACATGGA
CATCTCTAGCACGCCACCGAGCGATGAGATATCGGCAGCCCCCAGGACGC
ACCCATCCACCCCCCAACAGAAGAATCTGGGCGACATGGACATCTCTAGC
ACGCCACCGAGCGATGAGGACTTCGAATCGCCGGTGACGAGGAGGACAAG
CAGGGCGTCCACCCAACGCTTCCCACTATCACCCGCATCGCCCAACAAGA
GTACAACGGGTTCTGGCGCACGGGACTTCGAATCGCCGGTGACGAGGAGG
ACAAGCAGGGCGTCCACCCAACGCTTCCCACTATCACCCGCATCGCCCAA
CAAGAGTACAACGGGTTCTGGCGCACGGTCATCCGGGAAATCCGGGAAGA
AGCGCCGTCTGAGCTTCGGTTCCGAACAGAGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAAGAAGAAGACGATGATCATCCGGGAAATCCGGGAA
GAAGCGCCGTCTGAGCTTCGGTTCCGAACAGAGGGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAGAAGAAGAAGACGATGA
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