mRNA_C-linearis_contig96.17024.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17024.1
Unique NamemRNA_C-linearis_contig96.17024.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:126257..128414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size979
Cds size978
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17024.1prot_C-linearis_contig96.17024.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 126257..128414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.5834749-CDS-C-linearis_contig96:126256..1263421622930818.5834749-CDS-C-linearis_contig96:126256..126342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 126257..126342 -
1690881265.876245-CDS-C-linearis_contig96:126256..1263421690881265.876245-CDS-C-linearis_contig96:126256..126342Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 126257..126342 -
1622930818.6060915-CDS-C-linearis_contig96:126840..1269331622930818.6060915-CDS-C-linearis_contig96:126840..126933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 126841..126933 -
1690881265.8945684-CDS-C-linearis_contig96:126840..1269331690881265.8945684-CDS-C-linearis_contig96:126840..126933Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 126841..126933 -
1622930818.6305969-CDS-C-linearis_contig96:127137..1271731622930818.6305969-CDS-C-linearis_contig96:127137..127173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 127138..127173 -
1690881265.907637-CDS-C-linearis_contig96:127137..1271731690881265.907637-CDS-C-linearis_contig96:127137..127173Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 127138..127173 -
1622930818.6505425-CDS-C-linearis_contig96:127651..1284141622930818.6505425-CDS-C-linearis_contig96:127651..128414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 127652..128414 -
1690881265.9221048-CDS-C-linearis_contig96:127651..1284141690881265.9221048-CDS-C-linearis_contig96:127651..128414Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 127652..128414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17024.1

>prot_C-linearis_contig96.17024.1 ID=prot_C-linearis_contig96.17024.1|Name=mRNA_C-linearis_contig96.17024.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=326bp
GGNADVLEIIVGECNNGTRNFFEHDVHTRKVHNALRAAVPLTSTDRPLVQ
KNRNNGGCEQTVNATGGHNCRMNKEYPAEQVEAAREIENAMFDKIAQDFP
GARVAVVHEFGDYRAGTHKKDGVPVVTREVLKGGLLVFRARGPHLCQIPG
SPASLRGNAEARLALRAHAARELRRHENSTYNDDDIGKAMLDVLEILATG
EEESTEYRASLKPEKTSDLVLTVGILRWEPLETIMTGVKEFGELYGGRGY
TSESGRNGDKKKKAQGANSCNIADCPCKGADKCTCVGHTHVSNASAGGSI
GAAPGLNGVGKPFNSGDGAAARDFSS
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mRNA from alignment at C-linearis_contig96:126257..128414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17024.1 ID=mRNA_C-linearis_contig96.17024.1|Name=mRNA_C-linearis_contig96.17024.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2158bp|location=Sequence derived from alignment at C-linearis_contig96:126257..128414- (Chordaria linearis ClinC8C monoicous)
GGCGGGAACGCGGACGTGTTAGAGATCATTGTTGGGGAGTGCAACAACGG
GACCAGGAATTTCTTTGAGCACGATGTCCACACCAGAAAGGTACACAACG
CGCTGCGGGCTGCTGTGCCGCTCACGTCCACCGACCGCCCTCTTGTCCAG
AAGAATAGAAACAACGGCGGATGCGAGCAAACAGTCAACGCGACAGGGGG
TCACAACTGCCGCATGAACAAGGAGTATCCCGCCGAGCAGGTGGAGGCAG
CTCGTGAGATCGAAAACGCTATGTTCGACAAGATCGCGCAAGACTTCCCG
GGCGCTCGGGTTGCGGTGGTACATGAGTTCGGCGATTACCGCGCCGGGAC
GCACAAGAAGGATGGGGTGCCCGTGGTGACCCGGGAGGTGTTGAAGGGCG
GCTTGTTGGTGTTCCGCGCTAGGGGCCCGCACCTCTGTCAGATACCGGGT
AGCCCCGCCTCTCTTCGGGGCAACGCCGAGGCCCGTTTGGCGTTGAGGGC
GCACGCCGCGCGAGAACTCAGGCGCCACGAAAACAGCACCTACAACGACG
ACGACATAGGGAAGGCCATGCTGGATGTGCTTGAGATCCTCGCGACTGGC
GAGGAAGAGTCCACGGAGTACCGGGCGAGCTTGAAGCCAGAAAAGACCAG
CGATCTGGTGCTGACGGTGGGAATCCTGAGGTGGGAGCCTCTGGAAACGA
TCATGACCGGTGTGAAGGAGTTCGGAGAGCTCTACGGGGGGCGTGGATAC
ACCAGCGAGAGCGGTAAGAGAGACCCGTTGTCGATCAGCATCTGTTCTAA
TCAGCGGTGGTTGTTGGCTGTTGTTTTAGTTGTTGGCTGCTGTTGTTTTA
GTTGTTGCTGTTGTTGGATGCTGTTGTTGTTGTTGTTGTCGTTGTTGTTG
TTGTTGTTGTTTTGAATTGTTGAATGATGGATGAATGGATGAATGAACGA
ATTAATTTGTGCTTGTGCGTTGTCATGTCTGATTATCCCTTCGTCCCATG
TGCACCCGACCTTCCGATTGTGCCCCTCAATGGGGGTGTTCTCGGCATGA
CCGTAGCTTCTAGGTCAAAAAGCATGGTTTCACTGAACGCTGACTTGTTC
GCGTCGGTTTTCGTGCGATCAATCCAGGCCAGGAGGCATCAAGCCTACCA
TGCTCACAACGATTGAATGACGCCAATATTCCCCCGCGTGTGCTCATCAT
TTTTCATTGTTCTTGTGCGGTTCATCTACTGCTCCATGCAGGCCGGAACG
GGGACAAGAAGAAGAAGGCACAAGGAGGTGGGGCCTGATTCGTTGTTGTT
GTTGTTGTTTCCGTCCTCTGTGACCGTTCCATGCCGACCCACCCCCGTGT
TCCCTCGTGTGCACACGACGCAACCACCTCATCCCCGCGCTGCTCCATGC
AATGCATTTGGCTGCATAATATTTCATTGAACTCCTTACGGCCGCTCTTG
GTCTCGCACTCGACATGATGATTCGTTTCAGCAAACTCCTGCAACATCGC
CGACTGCCCGTGCAAGGGTGCCGACAAGTGCACCTGCGTGGGCCACACCC
ACGTCTCCAACGCCTCAGCCGGCGGTAAGATTGATTGTGTACAGATTGTT
TTTGTTTGTTGGATGGTGTGCCCCGCACCCCACGTACCCACGGCACCCCC
GTTTCCTTCTCCATTGAATGTGTTGATACCGTTGCGTGCAATGGACCCTG
TGAATGAAATTTCGTATCCTTTCCTATGGGTCGAAGCGTCAATTTTGTTG
AGGCGGGTGAGCCATGGCCTCGGCAAGTAGCTGGGTTGACATGCTTTATA
TCAACACGTTCCGCCTGGGCTCAACACCACCCCCATTTCCCATCTCGGCT
GTTGGATCTAAATGATTTTTCAGCCAAGGCTTCGATAGGCACCACCTTAC
AGTCTGTTTTTGCCTTGTAGTCTAGTTATTTCCCATCCGAAATATACCAT
AACCTGTCCAAATTGCGCTTGACGCGGACAACAAGGTGGACCCTTGGCAG
CTCTGTTGCATGTGGATCACCAGATATCACGATACTCCAGACCTCACGTC
GGTTACCCGTCCTGTTCATCAGGTAGTATCGGTGCTGCTCCCGGCCTCAA
TGGAGTCGGCAAACCGTTCAACAGCGGCGACGGGGCCGCCGCGAGGGACT
TCAGCTCC
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Coding sequence (CDS) from alignment at C-linearis_contig96:126257..128414-

>mRNA_C-linearis_contig96.17024.1 ID=mRNA_C-linearis_contig96.17024.1|Name=mRNA_C-linearis_contig96.17024.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1956bp|location=Sequence derived from alignment at C-linearis_contig96:126257..128414- (Chordaria linearis ClinC8C monoicous)
GGCGGGAACGCGGACGTGTTAGAGATCATTGTTGGGGAGTGCAACAACGG
GACCAGGAATTTCTTTGAGCACGATGTCCACACCAGAAAGGTACACAACG
CGCTGCGGGCTGCTGTGCCGCTCACGTCCACCGACCGCCCTCTTGTCCAG
AAGAATAGAAACAACGGCGGATGCGAGCAAACAGTCAACGCGACAGGGGG
TCACAACTGCCGCATGAACAAGGAGTATCCCGCCGAGCAGGTGGAGGCAG
CTCGTGAGATCGAAAACGCTATGTTCGACAAGATCGCGCAAGACTTCCCG
GGCGCTCGGGTTGCGGTGGTACATGAGTTCGGCGATTACCGCGCCGGGAC
GCACAAGAAGGATGGGGTGCCCGTGGTGACCCGGGAGGTGTTGAAGGGCG
GCTTGTTGGTGTTCCGCGCTAGGGGCCCGCACCTCTGTCAGATACCGGGT
AGCCCCGCCTCTCTTCGGGGCAACGCCGAGGCCCGTTTGGCGTTGAGGGC
GCACGCCGCGCGAGAACTCAGGCGCCACGAAAACAGCACCTACAACGACG
ACGACATAGGGAAGGCCATGCTGGATGTGCTTGAGATCCTCGCGACTGGC
GAGGAAGAGTCCACGGAGTACCGGGCGAGCTTGAAGCCAGAAAAGACCAG
CGATCTGGTGCTGACGGTGGGAATCCTGAGGTGGGAGCCTCTGGAAACGA
TCATGACCGGTGTGAAGGAGTTCGGAGAGCTCTACGGGGGGCGTGGATAC
ACCAGCGAGAGCGGGCGGGAACGCGGACGTGTTAGAGATCATTGTTGGGG
AGTGCAACAACGGGACCAGGAATTTCTTTGAGCACGATGTCCACACCAGA
AAGGTACACAACGCGCTGCGGGCTGCTGTGCCGCTCACGTCCACCGACCG
CCCTCTTGTCCAGAAGAATAGAAACAACGGCGGATGCGAGCAAACAGTCA
ACGCGACAGGGGGTCACAACTGCCGCATGAACAAGGAGTATCCCGCCGAG
CAGGTGGAGGCAGCTCGTGAGATCGAAAACGCTATGTTCGACAAGATCGC
GCAAGACTTCCCGGGCGCTCGGGTTGCGGTGGTACATGAGTTCGGCGATT
ACCGCGCCGGGACGCACAAGAAGGATGGGGTGCCCGTGGTGACCCGGGAG
GTGTTGAAGGGCGGCTTGTTGGTGTTCCGCGCTAGGGGCCCGCACCTCTG
TCAGATACCGGGTAGCCCCGCCTCTCTTCGGGGCAACGCCGAGGCCCGTT
TGGCGTTGAGGGCGCACGCCGCGCGAGAACTCAGGCGCCACGAAAACAGC
ACCTACAACGACGACGACATAGGGAAGGCCATGCTGGATGTGCTTGAGAT
CCTCGCGACTGGCGAGGAAGAGTCCACGGAGTACCGGGCGAGCTTGAAGC
CAGAAAAGACCAGCGATCTGGTGCTGACGGTGGGAATCCTGAGGTGGGAG
CCTCTGGAAACGATCATGACCGGTGTGAAGGAGTTCGGAGAGCTCTACGG
GGGGCGTGGATACACCAGCGAGAGCGGCCGGAACGGGGACAAGAAGAAGA
AGGCACAAGGAGGCCGGAACGGGGACAAGAAGAAGAAGGCACAAGGAGCA
AACTCCTGCAACATCGCCGACTGCCCGTGCAAGGGTGCCGACAAGTGCAC
CTGCGTGGGCCACACCCACGTCTCCAACGCCTCAGCCGGCGCAAACTCCT
GCAACATCGCCGACTGCCCGTGCAAGGGTGCCGACAAGTGCACCTGCGTG
GGCCACACCCACGTCTCCAACGCCTCAGCCGGCGGTAGTATCGGTGCTGC
TCCCGGCCTCAATGGAGTCGGCAAACCGTTCAACAGCGGCGACGGGGCCG
CCGCGAGGGACTTCAGCTCCGTAGTATCGGTGCTGCTCCCGGCCTCAATG
GAGTCGGCAAACCGTTCAACAGCGGCGACGGGGCCGCCGCGAGGGACTTC
AGCTCC
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