prot_C-linearis_contig95.17006.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.17006.1
Unique Nameprot_C-linearis_contig95.17006.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length159
Homology
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.050e-14
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0 
Query:    1 MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNE-----DVLRELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKVKV 89
            MDVWRL  VA LVFRPVL SVASMKRL T  F  ++R  L A T+      +V+ +LR+LL A+S AT  +R+ SF++  + +++  QR+KV +
Sbjct:  643 MDVWRLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSKATHLLRSSSFNDETVASIDRLQREKVSL 736
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.540e-13
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:    1 MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNE-----DVLRELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKV 87
            MDVW L  VA LVFRPVL SVASMKRL T  F  ++R  L A T+      +V+ +LR+LL A+S AT  +R+ SF++  + +++ +QR+K 
Sbjct:  351 MDVWTLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSEATHLLRSSSFNDETVASIDRSQREKT 442
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWW6_ECTSI3.050e-1447.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJH2_ECTSI6.540e-1346.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.676

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:552334..553017 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17006.1mRNA_C-linearis_contig95.17006.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 551279..553587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.17006.1 ID=prot_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNEDVLR
ELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKVKVERPRFWFRGRR
PPGGFSIRRTTRRITAVTTCSSLRNSGDPQVVVRVSFVLNICGRAPSEQA
IVLPKAGD*
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