mRNA_C-linearis_contig95.17006.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.17006.1
Unique NamemRNA_C-linearis_contig95.17006.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.010e-18
Identity = 69/192 (35.94%), Postives = 87/192 (45.31%), Query Frame = 1 
Query: 1519 KQVTNMGKVLSDRDGARLCSNHQELHISQNIRDLGKNAAIHAVRGVGCWVLPCDPSRCTLTTVSTHSFR*NTTLSTLLLTRSGFPFVVLVRGGMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASGGREVGKI 2091
            ++  ++  +L D+ G RLCSNHQ LH ++N  D G+                                                          + DCHAGESR KSFKS  KTAS RDNE HI+RREND MAA+AM  G  WTA  Y+K      + T++AS  C E LR +SE  I  RR   GR  G +
Sbjct:  731 REKVSLMSMLGDKHGGRLCSNHQGLHFAKNATDYGE----------------------------------------------------------LSDCHAGESRHKSFKSCAKTASGRDNEEHIVRRENDAMAAEAMAEGVRWTAWGYDKTKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIV 864
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-14
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 3 
Query: 1032 GGFSAQTGMDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNE-----DVLRELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKV 1316
            GGFSA +GMDVW L  VA LVFRPVL SVASMKRL T  F  ++R  L A T+      +V+ +LR+LL A+S AT  +R+ SF++  + +++ +QR+K 
Sbjct:  343 GGFSALSGMDVWTLSSVALLVFRPVLRSVASMKRLTTAPFRNDIRAELGATTDTVVTDTEVMEKLRALLLASSEATHLLRSSSFNDETVASIDRSQREKT 442
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-5
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query: 1795 GMVVDCHAGESRFKSFKSHDKTASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSEAISKRRASG-GREVGKI 2091
            G  ++ + GE+  K+ KS  K+ S RDN +HI RR N  +AA AM+ G  W A  Y+   G +   T++AS  C + L+ +S+ +S  R  G GR  G +
Sbjct:  503 GEAINVNTGEALHKTLKSFAKSTSGRDNIVHIARRLNTRLAADAMMEGLAWEARRYDNRDGWVVS-TVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTV 601
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BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.720e-5
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 
Query: 1858 TASSRDNELHILRRENDEMAAQAMINGQIWTASVYNKAAGAMEQATIKASGTCIEFLRGVSE-AISKRRASG 2070
            TAS RDNE HI+RREND  AA+ M  G  WTA   +K      + T++AS +C E LR +SE  I  R A G
Sbjct:  108 TASGRDNEEHIVRRENDATAAEVMAEGARWTAWRDDKTMREWVKKTVQASPSCRELLRAISEWEIGTRTAPG 179
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWW6_ECTSI4.010e-1835.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJH2_ECTSI1.080e-1449.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF97_9PHAE1.090e-537.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7J0_9PHAE2.720e-548.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:551279..553587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2102
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17006.1prot_C-linearis_contig95.17006.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 552334..553017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1018858-UTR-C-linearis_contig95:551278..5523331622930818.1018858-UTR-C-linearis_contig95:551278..552333Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 551279..552333 +
1690881265.6804104-UTR-C-linearis_contig95:551278..5523331690881265.6804104-UTR-C-linearis_contig95:551278..552333Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 551279..552333 +
1622930818.1491446-UTR-C-linearis_contig95:553017..5535871622930818.1491446-UTR-C-linearis_contig95:553017..553587Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 553018..553587 +
1690881265.7325938-UTR-C-linearis_contig95:553017..5535871690881265.7325938-UTR-C-linearis_contig95:553017..553587Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 553018..553587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.1146233-CDS-C-linearis_contig95:552333..5524051622930818.1146233-CDS-C-linearis_contig95:552333..552405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 552334..552405 +
1690881265.6998892-CDS-C-linearis_contig95:552333..5524051690881265.6998892-CDS-C-linearis_contig95:552333..552405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 552334..552405 +
1622930818.1293318-CDS-C-linearis_contig95:552612..5530171622930818.1293318-CDS-C-linearis_contig95:552612..553017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 552613..553017 +
1690881265.721866-CDS-C-linearis_contig95:552612..5530171690881265.721866-CDS-C-linearis_contig95:552612..553017Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 552613..553017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.17006.1

>prot_C-linearis_contig95.17006.1 ID=prot_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MDVWRLMGVAALVFRPVLASVASMKRLLTGQFLTELRKRLNAETNEDVLR
ELRSLLQAASSATWHIRADSFSEADLKAVETTQRDKVKVERPRFWFRGRR
PPGGFSIRRTTRRITAVTTCSSLRNSGDPQVVVRVSFVLNICGRAPSEQA
IVLPKAGD*
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mRNA from alignment at C-linearis_contig95:551279..553587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2309bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous)
CAGGTAGTAGTGGCTTCTTATGTTTGGGCTGCCGCTGGATTTTCAACGAC
CGAAACACGCGGCAAAGACATGTATGTAACGAGGCGACACCCAGATCCAG
GGGCGGAGGCTTGAGACAGCGCAAGGAGCCGGTAGCAGTGGTGGCTCGGG
TTCTGGTGCTCCAAGCAGCACCTTGCCGCAAGCTATGGACCGCAGTGGCC
GTAGTAGTGGGTGCGGTGAGTCTCGCTCGTCGCGGAGACGCTCAGCTTCT
CCGCCCACTGCAGGGCAGCGCGACATTCGGCGGCGCCGCCTCATGCCACG
CAGCAGCAGCCATAGTAGTAGCGATTCCGACGGTAGTGAGCAACGAGAGA
GGCGTTACTCCAGCATGATGGACCAGGGCGAGGAGAAGCAGCACCGTGTG
TGTGACAGCAGCAGCAGCAGTAGCGGCGGGGACGCGGCGGCGGTGTTGAC
GAGCCGGGCAGCAGCAGAGAGTGGTCGATCGCACTACTGTACCCCACATC
TCCCTGTCCGTCGGTTCTGTCGTGCTTCAACCACGACGGATTAGGTGTTC
TTTCGTTTGGGGTTGCTGTCGTGCTTCGCGGACTCGCCTGCCCGGAATGC
CATTCTAGATACCAAGAAGGCCAACAGCAAGACCGTCATGCCCTGCCATG
CCTGCGCAGTGGAGCAAGTTGAGCTCAGCGATGGAAAATACGATGTTGAG
AGGTTTCGCCGGACTGACGATGCCACGGGTCCTCTTTGGATGTAGTGAGG
AGCGCCACCACCAATGCAGCGAAGCAGAAGCTTTCGATGGAGCACGGAGT
CAACCTTGCAGAAGTTCCGAACCCACTTCGACAGCACATTTCTGCAAACC
TGACACGCGCCGTCGGGATAGATATCTTCCATTACGACGCCCAGAACTCA
GGCAGGAAGGTTTTGAAGTTCTTCCTTCGTGGTGCCTCCCCCAAAAACGG
CCACCCTGTCATCGCGGGCATCGTTAGGGACCCCCACCTGAGGACGCCGG
GAGCGCCAGCCTTCCGAGACCTCACCGCCCCGGGGGCTTTAGCGCGCAGA
CCGGCATGGACGTCTGGCGACTGATGGGCGTTGCGGCGCTTGTTTTTCGG
CCGGTGCTTGCGAGCGTGGCTTCGATGGTGAGGGGCGACGTTCATCCCAG
AGACCCAGTGGGGGAAACTCGAACTACTTAAGTTGCCCTGAGCGAAGCGG
CCGCTGCATTCTTACATGCCCACGGTAGTTTTGGTGTAGCGACAGACCCA
AAGTTAGTTGCCTCACATCACTACCAGGCTGAGAGAGCGGTTCCCCATAT
TACGTACGTACATGATCGTTCGCGGTGCTCGCAGAAGCGGCTCTTGACGG
GGCAGTTCCTCACGGAGCTCAGGAAGAGGCTAAACGCGGAGACCAACGAG
GACGTGCTCCGGGAGCTGCGCTCCTTGCTGCAGGCCGCGTCGAGCGCAAC
CTGGCACATACGCGCGGACTCCTTCAGCGAGGCCGACCTGAAGGCCGTGG
AGACAACACAACGAGACAAGGTGAAGGTGGAGCGTCCGCGTTTTTGGTTC
CGTGGGCGACGACCCCCCGGCGGTTTTTCTATCCGGCGGACGACACGCCG
GATCACAGCAGTGACAACGTGCTCGTCCTTGCGAAACAGTGGCGATCCTC
AAGTTGTAGTTCGAGTTTCGTTCGTTCTTAACATATGCGGTCGGGCGCCA
TCTGAACAAGCTATAGTGCTGCCCAAAGCAGGTGACTAACATGGGCAAGG
TGCTCTCCGACAGGGATGGGGCAAGGCTCTGCAGCAACCACCAGGAACTG
CACATTTCCCAGAACATCCGGGACCTCGGTAAGAATGCGGCGATACATGC
CGTGCGAGGGGTGGGGTGTTGGGTCCTCCCGTGTGATCCATCGCGTTGTA
CACTGACTACTGTTTCAACACACAGTTTTCGCTGAAATACCACCCTGTCG
ACCCTCCTCCTCACACGCTCTGGTTTCCCTTTCGTGGTGCTCGTCCGTGG
AGGCATGGTTGTCGACTGCCACGCGGGTGAGTCACGGTTCAAGTCCTTCA
AGTCGCACGACAAAACGGCGAGTAGCAGGGATAACGAGCTTCACATCCTT
CGCCGCGAGAACGACGAAATGGCTGCGCAGGCGATGATCAACGGGCAGAT
TTGGACAGCATCGGTGTACAACAAGGCAGCAGGGGCGATGGAGCAGGCCA
CGATAAAGGCGAGCGGGACCTGCATCGAGTTCCTGAGAGGCGTCTCGGAG
GCAATTTCCAAAAGGCGAGCAAGTGGAGGCCGAGAGGTGGGCAAGATTGG
TCTGTCAAC
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Coding sequence (CDS) from alignment at C-linearis_contig95:551279..553587+

>mRNA_C-linearis_contig95.17006.1 ID=mRNA_C-linearis_contig95.17006.1|Name=mRNA_C-linearis_contig95.17006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig95:551279..553587+ (Chordaria linearis ClinC8C monoicous)
ATGGACGTCTGGCGACTGATGGGCGTTGCGGCGCTTGTTTTTCGGCCGGT
GCTTGCGAGCGTGGCTTCGATGATGGACGTCTGGCGACTGATGGGCGTTG
CGGCGCTTGTTTTTCGGCCGGTGCTTGCGAGCGTGGCTTCGATGAAGCGG
CTCTTGACGGGGCAGTTCCTCACGGAGCTCAGGAAGAGGCTAAACGCGGA
GACCAACGAGGACGTGCTCCGGGAGCTGCGCTCCTTGCTGCAGGCCGCGT
CGAGCGCAACCTGGCACATACGCGCGGACTCCTTCAGCGAGGCCGACCTG
AAGGCCGTGGAGACAACACAACGAGACAAGGTGAAGGTGGAGCGTCCGCG
TTTTTGGTTCCGTGGGCGACGACCCCCCGGCGGTTTTTCTATCCGGCGGA
CGACACGCCGGATCACAGCAGTGACAACGTGCTCGTCCTTGCGAAACAGT
GGCGATCCTCAAGTTGTAGTTCGAGTTTCGTTCGTTCTTAACATATGCGG
TCGGGCGCCATCTGAACAAGCTATAGTGCTGCCCAAAGCAGGTGACTAAA
AGCGGCTCTTGACGGGGCAGTTCCTCACGGAGCTCAGGAAGAGGCTAAAC
GCGGAGACCAACGAGGACGTGCTCCGGGAGCTGCGCTCCTTGCTGCAGGC
CGCGTCGAGCGCAACCTGGCACATACGCGCGGACTCCTTCAGCGAGGCCG
ACCTGAAGGCCGTGGAGACAACACAACGAGACAAGGTGAAGGTGGAGCGT
CCGCGTTTTTGGTTCCGTGGGCGACGACCCCCCGGCGGTTTTTCTATCCG
GCGGACGACACGCCGGATCACAGCAGTGACAACGTGCTCGTCCTTGCGAA
ACAGTGGCGATCCTCAAGTTGTAGTTCGAGTTTCGTTCGTTCTTAACATA
TGCGGTCGGGCGCCATCTGAACAAGCTATAGTGCTGCCCAAAGCAGGTGA
CTAA
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