mRNA_C-linearis_contig95.17003.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.17003.1
Unique NamemRNA_C-linearis_contig95.17003.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI)

HSP 1 Score: 596 bits (1537), Expect = 7.460e-197
Identity = 452/774 (58.40%), Postives = 501/774 (64.73%), Query Frame = 3 
Query:  438 TARRVRPRSRPPSPPSVDRSTSLVGRNLRRTPSRRAAVSLS----TPA------APAPGMSMP--LFLSLLAVSIGAAPXXXXXXXXXXXXXXXXXXXXXXXSSWPRFSFFSAXXXXXXXGTTPTGAFCFPARSRNRLVVSSEGCGGGGLRHSLTRRLRRRSAGAALSAAAAPGRSSSLGRCLLQVGSSVGSSTAPPSFSLR----GISRLGGAVHP---RWVGGGEGXXXXGH---VGRAALL---SRVRSMVGLGHTDDWGSXXXXXXXXXXXXXXXXGAAAGAGPAADWDDGGWDNAELLSSFGFAGDSGDSHGSGAIGTWGDGAAEGTMASSLSERDAARLEEVGIMVRELEV----GAXXXXXXXXXXXXXXXXXXXXTPATPQPRSPREEGDGGPVDGGHTAAERRADFVGGVATGNAHLRMTCGDTVFFGQLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRDGEYPSFEELK 2672
            TARR+RPRS  P PP V   +   GR   R    + A  +S    +PA       PA G+SM   L LSLLAVS     XXXXXXXXXXXXXXXXXXXX   S +   +F SA                 P   R  + V S        R + TRRLRRRS  +  S+AA                S+ G S AP +   R      S   GA  P    W+  G      G    +    LL   SR+RS   +G TDDW +                    GAG   +WDD    + +LL+SFGF G       +    +  D       A SLSERDAARLEEVGIMV ELE     G XXXXXXXXXXXXXXXXXXXX              D    +   TA  R+ D  G  A  +A LRMTCGD VFF  LA+LMQG+HRQSG RKFL H  EM LG  VQRYR LIEAQEKAEK+ G RP L +VARS AGLS++ FA+VMQ GMEARQKLVVCNLALVVSLANKYKRSHF+C CLQTLIQEGTIGLIRAAERYDP KGFRFTTYAIWWIEARLRVSVQTEER IHVPMWVKN+YN V RS+PKLR++LGREPT EE+AAQV IDT+SKVV+TPKRV+EL  WV+FHRKHESLDVP+EV T +P DCSTIE GVKA +PS ESTSELEIQRDFLESCL QDLS+IQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR G YPSFEELK
Sbjct:   26 TARRIRPRSAAPPPPGV--GSVGGGREACRQAYLKQAGGVSGGAFSPAWTGGVSIPASGLSMSTALLLSLLAVSGXXXXXXXXXXXXXXXXXXXXXXXXTAPSPFSSTAFCSAWP---------------PPPLRVCVGVPSA------WRPASTRRLRRRSNASNASSAAR---------------STAGRSRAPSALCSRRNSISCSWSTGAPPPPTPSWLWKGRRARSYGGGRCLSGGGLLPPRSRLRSRTQIGLTDDWSTGEASHRPED----------GGAGWNCEWDD----DVDLLTSFGFDGXXXXXXPADTDASTVD------DAPSLSERDAARLEEVGIMVEELEGNRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDADIKELMRTA--RKGDLAGR-AMDSARLRMTCGDPVFFAHLAELMQGVHRQSGGRKFLNHEEEMELGETVQRYRGLIEAQEKAEKDSGRRPRLRDVARS-AGLSEEAFASVMQAGMEARQKLVVCNLALVVSLANKYKRSHFDCGCLQTLIQEGTIGLIRAAERYDPSKGFRFTTYAIWWIEARLRVSVQTEERFIHVPMWVKNQYNTVHRSVPKLRKSLGREPTSEELAAQVEIDTNSKVVVTPKRVEELETWVSFHRKHESLDVPLEVSTPVPADCSTIEDGVKAPDPSTESTSELEIQRDFLESCLCQDLSKIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRGGGYPSFEELK 737
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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.780e-38
Identity = 104/313 (33.23%), Postives = 169/313 (53.99%), Query Frame = 3 
Query: 1710 KFLTHAGEMALGAKVQRYRRLIEAQEKAE---KEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSID----TDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 2627
            + L+   E+ LGA VQ    L+ A+ +     +  G  P LAE A  +   S+  + A ++ G+ A++ +V CNL LVV+LA K++        L  LIQEG +GL+RAAE+YDP +GFRF+TYA WW+  RL +SV++  R++ VP+ V +++  + R++  L   LGR PT  E+AA+  +        +  + P    +  +  A HR  + L       T L +  +  + G  A   ++E   E ++ R+ LE  +   LS+ +R I+RM+VGL   + K   E++   ++P   ++ EER A  KLR
Sbjct:   53 RLLSAEEELRLGALVQE---LVAAEARCAALAEALGREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQG---PPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLV------TMLDVTPAAADDGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREERNALTKLR 352
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BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A1C0VBJ4_9CYAN (RNA polymerase subunit sigma n=2 Tax=unclassified Limnothrix TaxID=2632864 RepID=A0A1C0VBJ4_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 2.960e-35
Identity = 106/324 (32.72%), Postives = 171/324 (52.78%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
            DL++   R+ G    LTH  E+ LG +VQR   L E ++K     G+ P LAE A ++ GLS DE  A ++EG  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++   L + LGR  T  E+  ++         L+PK++++        R  + L + + VG     +   +   ++   PS E  +     R  +E+ +A DL+  QR++L ++ GL   +     +I   L++    V   ER+A  KLR  + D
Sbjct:    9 DLVRAYLREIGRVPLLTHEQEIVLGKQVQRLNVLQEEKDKLTLRLGYEPGLAEWA-AAIGLSLDELKAAIREGDRAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRTLSQQLGRSATIAELGDEIG--------LSPKQIRDY-----LERARQPLSLDLRVGDNQDTELGEL---LEDEGPSPEEFATQSSLRGDIETIMA-DLTPQQREVLSLRFGLSDGQALTLAKIGDRLQISRERVRQIEREALTKLRKHKAD 311
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI001A058DB0 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A058DB0)

HSP 1 Score: 147 bits (371), Expect = 2.960e-35
Identity = 107/324 (33.02%), Postives = 170/324 (52.47%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
            D+++   R+ G    LTH  E+  G +VQR   L E +EK  ++ G+ P LAE A+  AG+S DE    + EG  A++++V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++  +L + LGR  T  E+A  +         LTPK+++E        R  + L + + VG     +   +   ++   PS E  +     R  LE+ +A+ L+  QR++L M+ GL   +     +I   L +    V   ER+A  KLR  + D
Sbjct:    9 DIVRAYLREIGRVPLLTHEQEIIYGKQVQRLTALQELKEKLAEKLGYEPSLAEWAKE-AGMSTDELQRAIAEGELAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQNLGRAATVAELAEALE--------LTPKQIREY-----LERSRQPLSLDLRVGDNQDTELGEL---LEDTGPSPEDFAINSSLRADLENIMAE-LTPQQRQVLSMRFGLEDGQALTLSKIGDRLNISRERVRQIEREALSKLRKRKAD 311
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: B4VTM7_9CYAN (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Coleofasciculus chthonoplastes TaxID=64178 RepID=B4VTM7_9CYAN)

HSP 1 Score: 147 bits (371), Expect = 4.050e-35
Identity = 105/324 (32.41%), Postives = 173/324 (53.40%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
            DL++   ++ G    LTH  E+  G +VQR   L + +E   ++ G+ P L E A++S+ LS+ E  + ++ G  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++  +L +TLGR  T  E+A ++         LTPK+V+E        +  + L + + VG     +   +   ++ + PS E  +     +  LE  +A DL+  QR++L ++ GL   +     +I   LK+    V   ER+A  KLR  Q D
Sbjct:   21 DLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS-LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELD--------LTPKQVREY-----LEKARQPLSLDLRVGDNQDTELGEL---LEDSGPSPEDFATYSAMQVDLEKLMA-DLTEQQREVLMLRFGLVDGQPMTLAKIGDQLKISRERVRQIEREALSKLRKRQAD 323
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: Q2JIA4_SYNJB (RNA polymerase sigma factor n=7 Tax=Synechococcus TaxID=1129 RepID=Q2JIA4_SYNJB)

HSP 1 Score: 147 bits (371), Expect = 9.010e-35
Identity = 110/330 (33.33%), Postives = 178/330 (53.94%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAE-VARSS-----AGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELE-IQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQR 2639
            DL++   ++ G    L    E+AL  KVQ Y +L++ + + +KE G  P LAE VA+++     A L+ ++   + + G  A++ ++  NL LVVS+A KY+        L  LIQEGT+GL RA E++DP KG+RF+TYA WWI   +  ++ T+ R I +P+ +  K N + ++  KL +  GR PT E+IA+++         +TP +V+EL +     R   S+ +  +VG     +   +   ++  + S E T   E + RD  +  L  DL+  +R ++RM+ GLG  +  +  EI RAL +    V   E KA  KLR  +R
Sbjct:   46 DLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLE---LLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELE--------MTPPQVRELLV-----RVPRSVSLETKVGKDKDTELGDL---LETDDISPEETMMREALHRDLQQ--LLSDLTSRERDVIRMRFGLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKR 354
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: A0A3M1T6H9_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Cyanobacteria bacterium J055 TaxID=2420338 RepID=A0A3M1T6H9_9CYAN)

HSP 1 Score: 145 bits (366), Expect = 1.360e-34
Identity = 106/328 (32.32%), Postives = 174/328 (53.05%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTI--EHGVKAAEPSLEST--SELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
            DL++   R+ G    LTH  E+ LG +VQR+  L E +E+   E  +R P      ++AGLSQ E   V+  G  A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + +   +L + LGR  T  E+AA++         LTP++++E        R  + L + + VG     + + +  + G    E +++S+  +ELE+        L +DL+  Q+++L ++ GL   +     +I   L++    V   ER+A  KLR  + D
Sbjct:    9 DLVRTYLREIGRVPLLTHEQEILLGKQVQRFAALKEIKEQLA-EKLNREPTENEWSNAAGLSQQELQKVIDSGEVAKRKMVEANLRLVVSVAKKYLKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRRLTQQLGRTATTAELAAEME--------LTPRQIREY-----LERARQPLSLDLRVGDNQDTELADLLEDEGPSPEEFAVQSSLRNELEV--------LMEDLTPQQKEVLSLRFGLQDGQSMTLAKIGARLQISRERVRQIEREALTKLRKRKAD 311
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0016822587 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI0016822587)

HSP 1 Score: 145 bits (366), Expect = 1.360e-34
Identity = 106/328 (32.32%), Postives = 168/328 (51.22%), Query Frame = 3 
Query: 1671 DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD-GEY 2651
            DL++   R+ G    LTH  E+  G +VQR   L E +   ++  G+ P L + ARS AG+ + E    +  G  A++++V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + ++   L + LGR  T  E+AA++         LTPK+V+E        R  + L + + VG     +   +      +     + S L++    LE  +A DL+  QR++L ++ GL   +     +I   L +    V   ER+A  KLR  + D GEY
Sbjct:    9 DLVRTYLREIGRVPLLTHEQEIVFGKQVQRLTNLQEVKNSLQEVLGYEPSLTDWARS-AGIEETELNNAIAAGETAKRRMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQQLGRAATAAELAAELE--------LTPKQVREY-----LERARQPLSLDLRVGDNQDTELGELLEDTGPSPEEFATQSSLQVD---LEKIMA-DLTPQQREVLALRFGLADGQALTLAKIGARLNISRERVRQIEREALSKLRKRKADMGEY 315
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 145 bits (365), Expect = 1.800e-34
Identity = 109/328 (33.23%), Postives = 171/328 (52.13%), Query Frame = 3 
Query: 1662 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLES-TSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLRGLQRD 2642
            Q  DL++   ++ G    LTH  E+ LG  VQR   L   +E  E++ G  P  AE A +S GLS    AA ++EG +A++K+V  NL LVVS+A KY + + +   L  LIQEGTIG+ R  E++DP KG+RF+TYA WWI   +  ++  + R I +P+ +  K N + R+  +L +  GR  T  E+AA++         L+PK V+E        +  + L + + VG     + S +   ++   PS E   ++  ++RD     L  DL+  QR++L ++ GL   +     +I   L +    V   ER+A  KLR  + D
Sbjct:    5 QNTDLVRTYLKEIGRVPLLTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEAS-GLSTQALAAAIREGEQAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQRQLSQKHGRTATVSELAAELE--------LSPKLVREY-----LEKSRQPLSLDLRVGDNQDTELSDL---LEDDGPSPEEFATQAALRRDL--DKLMVDLTPQQRQVLNLRFGLDDGQTMTLAKIGEMLSISRERVRQIEREALTKLRKHRSD 310
[Close]
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Match: UPI000EFC7652 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFC7652)

HSP 1 Score: 144 bits (364), Expect = 2.630e-34
Identity = 103/322 (31.99%), Postives = 164/322 (50.93%), Query Frame = 3 
Query: 1662 QLADLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPPLAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHFNCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVVLTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSLESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEERKAFYKLR 2627
            Q + L++   +  G    LTH  E+ LG KVQ+Y +L EA+    +  G  P  A  A S+A LS +E    ++ G  AR K+V  NL LVVS+A KY         +  LIQEGTIGL R  E++DPGKG+RF+TYA WWI   +  S+    R+I +P+ + +K   + ++  +L ++LGR  T +E+A+++S+            V++LR      R+  SLD+ +       L     + G+   E +  +     + ++ L   L++ LS  QR ++RM+ GL         ++  ++ +    V   ER A  KLR
Sbjct:    6 QSSSLVRSYLKNIGRFPLLTHEQEITLGKKVQKYMKLEEAKSDLVESMGDTPSPAVWAESTA-LSTEELQRAVEVGQRARAKMVRSNLRLVVSVAKKYAGHSLE---MMDLIQEGTIGLHRGVEKFDPGKGYRFSTYAYWWIRQAITRSISNNSRVIRLPIHIGDKLRKMRKAQRQLSQSLGRPATVKEVASEMSLS-----------VEKLRELQEQGRRPLSLDMKIGSEQNTELGALLEDEGILPEEYATRN-----LLKNDLSQLLSKTLSEQQRAVIRMRFGLDTGSKMTLHQVGDSMGISRERVRQVERSALRKLR 307
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7N1_ECTSI7.460e-19758.40RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
A0A835Z811_9STRA2.780e-3833.23RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A1C0VBJ4_9CYAN2.960e-3532.72RNA polymerase subunit sigma n=2 Tax=unclassified ... [more]
UPI001A058DB02.960e-3533.02RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
B4VTM7_9CYAN4.050e-3532.41RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
Q2JIA4_SYNJB9.010e-3533.33RNA polymerase sigma factor n=7 Tax=Synechococcus ... [more]
A0A3M1T6H9_9CYAN1.360e-3432.32RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI00168225871.360e-3432.32RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0019DF3EF81.800e-3433.23RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI000EFC76522.630e-3431.99RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:506785..513824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score604.7
Seed ortholog evalue5.9e-170
Seed eggNOG ortholog2880.D7G7N1
KEGG koko:K03086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-22_001740.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons8
Model size3270
Cds size2355
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17003.1prot_C-linearis_contig95.17003.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 507105..513229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.504543-UTR-C-linearis_contig95:506784..5071041622930817.504543-UTR-C-linearis_contig95:506784..507104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 506785..507104 +
1690881265.3563986-UTR-C-linearis_contig95:506784..5071041690881265.3563986-UTR-C-linearis_contig95:506784..507104Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 506785..507104 +
1622930817.6437376-UTR-C-linearis_contig95:513229..5138241622930817.6437376-UTR-C-linearis_contig95:513229..513824Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 513230..513824 +
1690881265.470754-UTR-C-linearis_contig95:513229..5138241690881265.470754-UTR-C-linearis_contig95:513229..513824Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 513230..513824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930817.5251062-CDS-C-linearis_contig95:507104..5085621622930817.5251062-CDS-C-linearis_contig95:507104..508562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 507105..508562 +
1690881265.3690338-CDS-C-linearis_contig95:507104..5085621690881265.3690338-CDS-C-linearis_contig95:507104..508562Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 507105..508562 +
1622930817.5424635-CDS-C-linearis_contig95:509291..5095011622930817.5424635-CDS-C-linearis_contig95:509291..509501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 509292..509501 +
1690881265.3785098-CDS-C-linearis_contig95:509291..5095011690881265.3785098-CDS-C-linearis_contig95:509291..509501Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 509292..509501 +
1622930817.5565968-CDS-C-linearis_contig95:510341..5104701622930817.5565968-CDS-C-linearis_contig95:510341..510470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 510342..510470 +
1690881265.3882384-CDS-C-linearis_contig95:510341..5104701690881265.3882384-CDS-C-linearis_contig95:510341..510470Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 510342..510470 +
1622930817.5701401-CDS-C-linearis_contig95:510725..5108721622930817.5701401-CDS-C-linearis_contig95:510725..510872Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 510726..510872 +
1690881265.3986816-CDS-C-linearis_contig95:510725..5108721690881265.3986816-CDS-C-linearis_contig95:510725..510872Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 510726..510872 +
1622930817.5866582-CDS-C-linearis_contig95:511240..5113691622930817.5866582-CDS-C-linearis_contig95:511240..511369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 511241..511369 +
1690881265.4133074-CDS-C-linearis_contig95:511240..5113691690881265.4133074-CDS-C-linearis_contig95:511240..511369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 511241..511369 +
1622930817.6020877-CDS-C-linearis_contig95:511863..5119351622930817.6020877-CDS-C-linearis_contig95:511863..511935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 511864..511935 +
1690881265.4269223-CDS-C-linearis_contig95:511863..5119351690881265.4269223-CDS-C-linearis_contig95:511863..511935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 511864..511935 +
1622930817.6191916-CDS-C-linearis_contig95:512684..5127831622930817.6191916-CDS-C-linearis_contig95:512684..512783Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 512685..512783 +
1690881265.44109-CDS-C-linearis_contig95:512684..5127831690881265.44109-CDS-C-linearis_contig95:512684..512783Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 512685..512783 +
1622930817.6311488-CDS-C-linearis_contig95:513118..5132291622930817.6311488-CDS-C-linearis_contig95:513118..513229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 513119..513229 +
1690881265.4559171-CDS-C-linearis_contig95:513118..5132291690881265.4559171-CDS-C-linearis_contig95:513118..513229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 513119..513229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.17003.1

>prot_C-linearis_contig95.17003.1 ID=prot_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=785bp
MIQPRRQEMPSVSVVGGATPAAAAEPCPFAAASPRPRPLTARRVRPRSRP
PSPPSVDRSTSLVGRNLRRTPSRRAAVSLSTPAAPAPGMSMPLFLSLLAV
SIGAAPAAAAAAAAVAALSSATTTTTTTSSSWPRFSFFSATTTATTSGTT
PTGAFCFPARSRNRLVVSSEGCGGGGLRHSLTRRLRRRSAGAALSAAAAP
GRSSSLGRCLLQVGSSVGSSTAPPSFSLRGISRLGGAVHPRWVGGGEGGG
GGGHVGRAALLSRVRSMVGLGHTDDWGSGSTEDTGCRSQQDDGPGAAAGA
GPAADWDDGGWDNAELLSSFGFAGDSGDSHGSGAIGTWGDGAAEGTMASS
LSERDAARLEEVGIMVRELEVGAGGGAASVATGAGVGGAGTGTTPATPQP
RSPREEGDGGPVDGGHTAAERRADFVGGVATGNAHLRMTCGDTVFFGQLA
DLMQGLHRQSGERKFLTHAGEMALGAKVQRYRRLIEAQEKAEKEDGHRPP
LAEVARSSAGLSQDEFAAVMQEGMEARQKLVVCNLALVVSLANKYKRSHF
NCNCLQTLIQEGTIGLIRAAERYDPGKGFRFTTYAIWWIEARLRVSVQTE
ERMIHVPMWVKNKYNIVSRSIPKLRETLGREPTCEEIAAQVSIDTDSKVV
LTPKRVKELRMWVAFHRKHESLDVPVEVGTRLPLDCSTIEHGVKAAEPSL
ESTSELEIQRDFLESCLAQDLSRIQRKILRMKVGLGGEKGKNRQEISRAL
KMPFNNVISEERKAFYKLRGLQRDGEYPSFEELK*
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mRNA from alignment at C-linearis_contig95:506785..513824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17003.1 ID=mRNA_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7040bp|location=Sequence derived from alignment at C-linearis_contig95:506785..513824+ (Chordaria linearis ClinC8C monoicous)
TGCTTTTGCTCGAGCTGTGTCTGGCCTTGAACTCCTATCGAATGCCGCTT
AAACTGTCGTTTTCTGCTGCCGCGCAACACGCCGAGCTACCTATCCCCAA
TTGAACTCAATCGCGGGCTGCCACAAAAATCAAAAACACTTGAAAAACAC
GCAATCCCCGATCACCCCCTCTGTTGTCCGCAGAGAGCCGGTTAGCCACG
CGGCACGGGCGTTGTTCCACAAAGCGACCAAACGAGTTACTGCTGCTGTT
TTTTTTCTCCGCGTGGGCAATTTCCTTTGGAGCGGAGGCTCCAGCCACCA
ACTTTTCTCAGCGGGTTAGGATGATCCAGCCGCGGAGACAAGAAATGCCG
TCCGTGTCCGTCGTAGGAGGAGCAACCCCGGCGGCGGCCGCCGAACCCTG
CCCCTTCGCCGCGGCCTCTCCCCGCCCGCGGCCGCTCACGGCGCGACGCG
TCCGTCCTCGCTCCCGCCCGCCATCGCCGCCCAGCGTAGACAGAAGCACT
AGTTTGGTCGGCAGAAATCTCCGGAGAACGCCGTCGCGGCGGGCGGCGGT
GTCGCTGTCAACGCCTGCGGCGCCGGCGCCGGGCATGTCGATGCCGTTGT
TCTTGTCCCTGCTGGCCGTTTCGATCGGGGCCGCGCCGGCGGCCGCGGCG
GCCGCGGCAGCCGTGGCGGCGTTGTCGTCGGCAACAACAACAACAACAAC
AACGTCGTCGTCTTGGCCGCGATTTTCGTTTTTCTCCGCGACAACAACCG
CCACCACCAGTGGCACCACGCCCACCGGGGCCTTCTGTTTCCCCGCCAGG
TCTAGGAATCGTTTGGTTGTTTCATCGGAAGGATGCGGCGGCGGTGGCTT
GCGACATTCCCTGACACGGCGGTTACGTAGACGCAGCGCCGGCGCCGCCT
TGTCGGCAGCAGCGGCACCGGGTCGGAGTAGTAGTCTAGGCCGTTGCTTG
TTGCAGGTGGGCTCTTCGGTGGGCTCTTCGACGGCACCGCCTTCGTTTTC
GTTGCGAGGAATTAGTCGGTTAGGCGGGGCCGTGCACCCAAGGTGGGTCG
GAGGTGGTGAGGGCGGCGGCGGCGGCGGCCATGTCGGCAGAGCGGCGCTG
CTCTCGCGAGTCCGCAGCATGGTCGGGCTGGGACACACGGACGACTGGGG
TAGCGGCAGCACGGAGGACACCGGCTGTAGATCGCAACAAGACGACGGGC
CCGGGGCTGCGGCGGGAGCGGGGCCGGCAGCCGACTGGGACGACGGTGGG
TGGGACAACGCCGAGCTCCTGTCGAGCTTCGGGTTCGCCGGAGACAGCGG
CGACAGCCACGGCAGCGGCGCGATAGGGACGTGGGGGGACGGTGCAGCGG
AGGGCACGATGGCGTCTTCGCTATCCGAGCGGGATGCGGCTCGGCTCGAG
GAGGTCGGGATCATGGTGAGGGAGCTGGAGGTCGGCGCGGGGGGCGGCGC
GGCTTCGGTGGCAACGGGGGCGGGGGTCGGCGGGGCCGGCACGGGAACAA
CACCTGCCACTCCGCAGCCACGATCTCCGCGAGAAGAAGGCGACGGGGGT
CCTGTGGATGGGGGCCACACTGCCGCCGAGAGGAGGGCGGATTTTGTCGG
GGGCGTGGCGACGGGCAACGCGCATCTGCGGATGACATGCGGGGACACGG
TGTTCTTCGGTCAGCTGGCCGACCTCATGCAGGGGCTGCACCGGCAGTCC
GGGGAGCGGAAGTTCCTGACCCACGCGGGGGAGATGGCGCTCGGGGCCAA
AGTGCAGCGGTATCGGCGGCTCATCGAGGTGAGAAGATTATCGTTTTTCG
TTTTTTTGGTCCGAAGAACCTAGACTGTTGTACATACATAACATGGAATT
GTTGAGTCTGGGCAGAAAGAGCGGGACTCGATGACTGAGGCATGGCAGGA
GATATACGTTGCGTGGTGTGTGGTGTGTATTTCGTGTGCAGGCGGCGCTC
CCAGGCCGAATATGTCCGAAGCTGTCAGTCTTAGCCCAGCCCGCGAAGCG
CGGACAAGAGAAGGGCCCCATGGTGTTTGTGCTTATGTGTGTCCCCCAAT
CTTGTCGAGACGCCGCATTGCTCCATTTCGGGTGCAGGGTTTTGTGCAGC
CAGGTTTGACCTCGAAAAGGACTTTCTCTACACCCCATTTTGTTTTGCTG
TGGTACGCGCGGTTGTGGGTGTGTTCCTTTTTTCTCAGGCATACGTACCA
TGCCCCCCGCCGATCCGGTCAAAAATGAATTGACTACGGTCGGTGTCGGT
CGCGATTCGGAGCGAGCGCCGTATGTACCCGACTGACCAACTGAAGACGC
CAGCTCGAGTCGTTCGTCCGATCGAAAAACACAAAACGAGACCGTGATTG
ACCCGCCTCCAGATAACCCTGGCTCTCTCCCGCCCCCTCCTGTGTCTTGG
TGTGTCTATTTTTTTGCTTCGCTTCTGGTTTTTTGCTGACGTCTGCATGC
CTACACCCCTTTCCCCTCCGCGATCTTCCCACGGAACCCCTTTAAAAAAA
ACACCAGGCCCAGGAGAAGGCGGAGAAGGAGGACGGTCACAGGCCGCCCC
TCGCCGAGGTGGCTAGGTCGTCGGCGGGGCTGTCGCAGGACGAGTTCGCG
GCTGTGATGCAGGAGGGCATGGAGGCGAGGCAAAAGCTGGTAGTGTGTAA
CCTGGCGCTAGTGGTGTCGCTCGCCAACAAGTACAAGCGGAGCCACTTCA
ACTGCAACTGCCTGCAGGTGCGTGCGTTGCCGTGGATGTTGCTGCTGCTG
TTGTTGTTGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTT
GTTGTTGTTGTTGTTTTTGCTGTTTTTGCTGTTTTTGCTGTTTTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTTTTGCTGTTTTTGCTGTTTTTGCTGTTGTTGTTGCTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTTTTG
CTGTTTTTGCTGTTTTTGCTGTTTTTGTCGTTGGCGTTCTCGTGGTCTCG
CATCAGCAACTTGTACCGCCCTGGTGTCTTCTTAGTTTTTTTTTTCAATT
TCGTACATGGTTGGTAACCGATTATGCCGCCCTAACAAGGACGGCGTGGT
AAGGAAGGCGCCCGATTATGATGGGCACGTCTCCGCCCATGAACGAGGAG
TCCGGTTGGTGCAGCGTTGTCGTATGAAGCTGGGCCCCCCCCAAAACAGT
TGAACGTCGCCGCCTCGCCATCTTGTCGGTGTTCACTGATGCTGGTGCGG
AATTGGCGTCGTCGATTTAATTTAATCTAATTGGCCGAGGGAAGGGAGAG
TGGAGGAGCCGTTGAACGCCGGCCGAAAAAATCAAGAAACGAAAAAAGGG
GGAAATGAAGCAAAAGCGCAACAACAACACGCTAATCTGCAGTCTTTGAC
GATTCAACTCTCCCACCCGCCCGCCCGCCCGCCCGCCCGCCCTCCCATTC
GCTGCAGACCTTGATCCAGGAGGGTACGATCGGTCTGATCCGAGCGGCTG
AGAGGTACGACCCTGGCAAAGGCTTCCGCTTCACGACGTACGCCATCTGG
TGGATCGAAGCAAGGTTGCGAGTGTCGGTGCAGACGGTGCGTGAAAAGTG
AAAAATTCCTTGTTTGTTGCCGAATAGTGTACTTGTACTGCTGCTGTGTA
GGGCTTTTCAGGTTCATTTTACCACCTTACCACCACCACCCCGACCCCCC
TTTGGTGCCCCCCCCCCCACGGTATGTATATACTGGTGGGCCCCATCTTA
TCCTTCAAATGTGCGAAAACATCGTATCTGATGTGGGCCACTTTGCGCAC
CCAAACCCTGCCCCCCACCCATCACTTTCCAATTTTGTAAGGAGGAGCGC
ATGATTCACGTCCCCATGTGGGTGAAGAACAAGTACAACATAGTGAGCAG
GTCCATCCCGAAGCTGAGGGAGACTCTAGGGAGGGAACCGACTTGTGAGG
AGATAGCAGCGCAGGTTTCCATCGATACGGACTCGAAGGTGGGGCGAAGT
GGGCGGGCTATGTAGTGATGGGAGAGAGAAGCGAATGGGAGAGGATGAGA
GGGCGGACGGGCGTTCCGGGATTCAGAGAGGCAGCCTCCAGAGAGAAGAA
AATACGTCGAAGTCCCATGTACTGGGAAACAGAGGGGGGTAGAGCGGCGA
AGAGGCGGAGGGGTCGATTGTCAGGACAAGGTTGGCATTTCAATCGAGCG
GAAGGCCGTCCACCATTTGTGAAGACGAGAGACGAGCCGCATCGACCTTG
ACATGACACGACCTAGGTATACCCTGCCGAACTGCTGTGCTTCAACAATC
CGCCGCTGCCGGCACACGCGATGCACGGACGCTGAACGTTTGCCTCGTCA
TGCCAGGTGGTGCTCACCCCTAAGCGAGTCAAGGAGCTTCGGATGTGGGT
CGCGTTCCACCGGAAGCACGAGTCCCTTGACGTGCCCGTGGAGGTCGGAA
CAAGGCTGCCGCTCGACTGCTCCACGATAGAGCATGTGCGTTTACCCCCC
CCCCCTTCTCCCCCCGTCTCCTGGTGGTTTTTGTGGTTGTGCTGTGCGAG
TTGCCGTATTTATTTTGTGTATGTGCTTGAGCTAGGTTGCTAGGTTGTTG
TGCCTCTTGTCGCTCGGTTGTTGTTGATGTTGTTGTTGTTGTTGTTGTTG
TTTCGTCGATCGCGCGTGTCGGGGAGCCGCAGACAGCCGCAGGACTGACG
ATCGCACGGGTCAATCTTGCCGTGCCTGCTCAGTCGTCGTCCGCTGTCGA
CAATGAGACAGACGTCCCAGGATCCTTGGCGCGGCTCGCTCGATGCTGGG
TGTTGCTGGCGTTTTTTGTCGGTCTGCGTGCTTTTGTGCCCGTCGACCAC
CGGCTCACCCTCCGCGTGCGTGAGCTACTTCCATCCCACGTTGCCCCCCC
CCGTCGCCGCCGACGCCGTTTGCCGTTACTTCTTTCACGTGCGTAATGCG
TTCGGGTCTGCTCTGATCGATGCCTGCAGGGGGTGAAGGCGGCCGAACCG
TCGCTAGAGTCCACCTCCGAACTGGAAATACAGCGAGATTTCCTCGAGAG
CGTAAGTGCCAACTCTCGCGTGCAGTGCATACGTTTAGCTATTCGTGTTT
CTCCACGGCGTAGTGTGTCATCAGAGACGGGGGTGGGCGTCTATCTGTGT
TGCTTACGCCCACACCGTTTGGGGGGGGGCAAGCCCCGGGATTCACGTTG
CTGCTGTTTGCGTTGCTGTTTTGTCGTCGGCATCATGTCGTGGTCGTCGC
TGTTGGAGTGTTGTTGATTTTGTGGATGTTGTCGTTGTTAGGTGTAGAAC
TTATCCACTGAACTAACAGTCAGCGCTGACTGCTAGTTCAGTGGATAAGT
TCTACATCTTTTTGTTAGATATACAACTTATCCACTGAAGCTAACAGTCA
GCGATGTACAACTTATCCACTGGGTTTTCCGATATTTAAAAATCGGGTTT
TGGCGCAGCCGATGTACCGATTAAATCGGCTAGGAAATAAATCGGAATTA
AATCGGTATGTCCCGCGAGCTGCCCTCCGAAATTTTTGAAGGAGCACGCA
AGAGTACTGAAATGCACCCCCCTTTACACCCCCCCCCCGATGTACAGCCG
ATGTGCAGCCGATAAATACATCGATTAATACATCGCCCCCATTTTCCGAT
TCCGATTCCGATTTAAATCGGACCGATTAAATCGATGAATCGGTTCCGTT
CACAACCCTAATAAGTTGTATATCTAACAGTCGTTTTTCTCGCGCTCGCG
TTTTCTCGTTTTCCTTTTTCTTTTCTTGTCCTTTTGTGGTGTGCGTGCAG
TGCCTGGCCCAAGACCTGAGCAGGATCCAACGAAAGATTCTGCGCATGAA
AGTGGGCCTCGGCGGAGAAAAGGGCAAGAACCGACAGGAGATCAGCAGGG
TGAGTGAGTCACGGGACCCCCCGACGTATACCCTAACCGTAACGAAGCGG
TGCCTTTGTGGTGGACATTTTTTCTTTTTGCTGGAGCTTGGAAGGGTGAT
TGCGGCGGGGAAGCCGGGGCTATATTTCGCGCTGCAAGCTTGGCTGTGTT
TCGTGACAAGAGGGATCCCTGCATCATCGCGTTCATCAAACCATCTTTCA
TCTCGTTTGCGTGTGTTGTTGGCTCTCTGCGGTCTGACTATGTTGCCTCT
GCTTTGCCCTTTCCCTCCTCCCCGCCGCCGATGATCCCGCCATGTGTTGT
TGCTGTGTCGGGGATTCGTTCGGCGCGAGAGCAGGCGCTCAAGATGCCGT
TCAACAACGTTATCAGCGAGGAGAGAAAGGCGTTCTACAAGCTCAGAGGC
CTGCAGCGGGACGGCGAGTACCCCAGCTTCGAGGAGCTCAAATAGTATAG
TTCACGGTGGTTGGCTACTCCAGCACCTCGGTCTCTACCCGGCAGTCGAC
TCTGCCCTTTGACCTCGTGGTTTGTCGCTGATTTATCCGAGTGGGTGAGT
GAGGTGGTAGGGTTGTCTTGCCCAGGAGGACGTGGGAGGGCTGGTGGTGG
CGGAGGTCGACGCCGTGTATTGGAAACATTTTTTTGATATTGACATATAT
ATAAAGGGTGCTCGTGTCGGTTGGTTCGGTTTTCGTTGAGTCTTGGAAGG
GAAGAGAGGGAAGGAGGGGGGAGGGGGAAGGGAGGTCTTGAGTTAGTAGA
TATAGACGACGTGCTGTAGGACAGGATCTTTTTGGAGAGTGTTGATCTTT
GTGTGGCTCAGGCGCTTTTGCTCGGGGCTGATCGTTTCCCCCATCCCGAG
GGGGCCGTGGCGTTGGATTGGATTTGCCTCCGTCTCGGACGGGCGATTCA
AGCGTGTGCTGTTCTACACTATATACTTCGTAAACTTCGAAGTACGAAGT
ATACGCACAAAAGAGGCAGGTAAAAATCAGCTTGTGTTTTTTGGCAGCGG
CATGACCCGGCAGGTTTCGGCGAGCCGATCCGGCGGGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig95:506785..513824+

>mRNA_C-linearis_contig95.17003.1 ID=mRNA_C-linearis_contig95.17003.1|Name=mRNA_C-linearis_contig95.17003.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4710bp|location=Sequence derived from alignment at C-linearis_contig95:506785..513824+ (Chordaria linearis ClinC8C monoicous)
ATGATCCAGCCGCGGAGACAAGAAATGCCGTCCGTGTCCGTCGTAGGAGG
AGCAACCCCGGCGGCGGCCGCCGAACCCTGCCCCTTCGCCGCGGCCTCTC
CCCGCCCGCGGCCGCTCACGGCGCGACGCGTCCGTCCTCGCTCCCGCCCG
CCATCGCCGCCCAGCGTAGACAGAAGCACTAGTTTGGTCGGCAGAAATCT
CCGGAGAACGCCGTCGCGGCGGGCGGCGGTGTCGCTGTCAACGCCTGCGG
CGCCGGCGCCGGGCATGTCGATGCCGTTGTTCTTGTCCCTGCTGGCCGTT
TCGATCGGGGCCGCGCCGGCGGCCGCGGCGGCCGCGGCAGCCGTGGCGGC
GTTGTCGTCGGCAACAACAACAACAACAACAACGTCGTCGTCTTGGCCGC
GATTTTCGTTTTTCTCCGCGACAACAACCGCCACCACCAGTGGCACCACG
CCCACCGGGGCCTTCTGTTTCCCCGCCAGGTCTAGGAATCGTTTGGTTGT
TTCATCGGAAGGATGCGGCGGCGGTGGCTTGCGACATTCCCTGACACGGC
GGTTACGTAGACGCAGCGCCGGCGCCGCCTTGTCGGCAGCAGCGGCACCG
GGTCGGAGTAGTAGTCTAGGCCGTTGCTTGTTGCAGGTGGGCTCTTCGGT
GGGCTCTTCGACGGCACCGCCTTCGTTTTCGTTGCGAGGAATTAGTCGGT
TAGGCGGGGCCGTGCACCCAAGGTGGGTCGGAGGTGGTGAGGGCGGCGGC
GGCGGCGGCCATGTCGGCAGAGCGGCGCTGCTCTCGCGAGTCCGCAGCAT
GGTCGGGCTGGGACACACGGACGACTGGGGTAGCGGCAGCACGGAGGACA
CCGGCTGTAGATCGCAACAAGACGACGGGCCCGGGGCTGCGGCGGGAGCG
GGGCCGGCAGCCGACTGGGACGACGGTGGGTGGGACAACGCCGAGCTCCT
GTCGAGCTTCGGGTTCGCCGGAGACAGCGGCGACAGCCACGGCAGCGGCG
CGATAGGGACGTGGGGGGACGGTGCAGCGGAGGGCACGATGGCGTCTTCG
CTATCCGAGCGGGATGCGGCTCGGCTCGAGGAGGTCGGGATCATGGTGAG
GGAGCTGGAGGTCGGCGCGGGGGGCGGCGCGGCTTCGGTGGCAACGGGGG
CGGGGGTCGGCGGGGCCGGCACGGGAACAACACCTGCCACTCCGCAGCCA
CGATCTCCGCGAGAAGAAGGCGACGGGGGTCCTGTGGATGGGGGCCACAC
TGCCGCCGAGAGGAGGGCGGATTTTGTCGGGGGCGTGGCGACGGGCAACG
CGCATCTGCGGATGACATGCGGGGACACGGTGTTCTTCGGTCAGCTGGCC
GACCTCATGCAGGGGCTGCACCGGCAGTCCGGGGAGCGGAAGTTCCTGAC
CCACGCGGGGGAGATGGCGCTCGGGGCCAAAGTGCAGCGGTATCGGCGGC
TCATCGAGATGATCCAGCCGCGGAGACAAGAAATGCCGTCCGTGTCCGTC
GTAGGAGGAGCAACCCCGGCGGCGGCCGCCGAACCCTGCCCCTTCGCCGC
GGCCTCTCCCCGCCCGCGGCCGCTCACGGCGCGACGCGTCCGTCCTCGCT
CCCGCCCGCCATCGCCGCCCAGCGTAGACAGAAGCACTAGTTTGGTCGGC
AGAAATCTCCGGAGAACGCCGTCGCGGCGGGCGGCGGTGTCGCTGTCAAC
GCCTGCGGCGCCGGCGCCGGGCATGTCGATGCCGTTGTTCTTGTCCCTGC
TGGCCGTTTCGATCGGGGCCGCGCCGGCGGCCGCGGCGGCCGCGGCAGCC
GTGGCGGCGTTGTCGTCGGCAACAACAACAACAACAACAACGTCGTCGTC
TTGGCCGCGATTTTCGTTTTTCTCCGCGACAACAACCGCCACCACCAGTG
GCACCACGCCCACCGGGGCCTTCTGTTTCCCCGCCAGGTCTAGGAATCGT
TTGGTTGTTTCATCGGAAGGATGCGGCGGCGGTGGCTTGCGACATTCCCT
GACACGGCGGTTACGTAGACGCAGCGCCGGCGCCGCCTTGTCGGCAGCAG
CGGCACCGGGTCGGAGTAGTAGTCTAGGCCGTTGCTTGTTGCAGGTGGGC
TCTTCGGTGGGCTCTTCGACGGCACCGCCTTCGTTTTCGTTGCGAGGAAT
TAGTCGGTTAGGCGGGGCCGTGCACCCAAGGTGGGTCGGAGGTGGTGAGG
GCGGCGGCGGCGGCGGCCATGTCGGCAGAGCGGCGCTGCTCTCGCGAGTC
CGCAGCATGGTCGGGCTGGGACACACGGACGACTGGGGTAGCGGCAGCAC
GGAGGACACCGGCTGTAGATCGCAACAAGACGACGGGCCCGGGGCTGCGG
CGGGAGCGGGGCCGGCAGCCGACTGGGACGACGGTGGGTGGGACAACGCC
GAGCTCCTGTCGAGCTTCGGGTTCGCCGGAGACAGCGGCGACAGCCACGG
CAGCGGCGCGATAGGGACGTGGGGGGACGGTGCAGCGGAGGGCACGATGG
CGTCTTCGCTATCCGAGCGGGATGCGGCTCGGCTCGAGGAGGTCGGGATC
ATGGTGAGGGAGCTGGAGGTCGGCGCGGGGGGCGGCGCGGCTTCGGTGGC
AACGGGGGCGGGGGTCGGCGGGGCCGGCACGGGAACAACACCTGCCACTC
CGCAGCCACGATCTCCGCGAGAAGAAGGCGACGGGGGTCCTGTGGATGGG
GGCCACACTGCCGCCGAGAGGAGGGCGGATTTTGTCGGGGGCGTGGCGAC
GGGCAACGCGCATCTGCGGATGACATGCGGGGACACGGTGTTCTTCGGTC
AGCTGGCCGACCTCATGCAGGGGCTGCACCGGCAGTCCGGGGAGCGGAAG
TTCCTGACCCACGCGGGGGAGATGGCGCTCGGGGCCAAAGTGCAGCGGTA
TCGGCGGCTCATCGAGGCCCAGGAGAAGGCGGAGAAGGAGGACGGTCACA
GGCCGCCCCTCGCCGAGGTGGCTAGGTCGTCGGCGGGGCTGTCGCAGGAC
GAGTTCGCGGCTGTGATGCAGGAGGGCATGGAGGCGAGGCAAAAGCTGGT
AGTGTGTAACCTGGCGCTAGTGGTGTCGCTCGCCAACAAGTACAAGCGGA
GCCACTTCAACTGCAACTGCCTGCAGGCCCAGGAGAAGGCGGAGAAGGAG
GACGGTCACAGGCCGCCCCTCGCCGAGGTGGCTAGGTCGTCGGCGGGGCT
GTCGCAGGACGAGTTCGCGGCTGTGATGCAGGAGGGCATGGAGGCGAGGC
AAAAGCTGGTAGTGTGTAACCTGGCGCTAGTGGTGTCGCTCGCCAACAAG
TACAAGCGGAGCCACTTCAACTGCAACTGCCTGCAGACCTTGATCCAGGA
GGGTACGATCGGTCTGATCCGAGCGGCTGAGAGGTACGACCCTGGCAAAG
GCTTCCGCTTCACGACGTACGCCATCTGGTGGATCGAAGCAAGGTTGCGA
GTGTCGGTGCAGACGACCTTGATCCAGGAGGGTACGATCGGTCTGATCCG
AGCGGCTGAGAGGTACGACCCTGGCAAAGGCTTCCGCTTCACGACGTACG
CCATCTGGTGGATCGAAGCAAGGTTGCGAGTGTCGGTGCAGACGGAGGAG
CGCATGATTCACGTCCCCATGTGGGTGAAGAACAAGTACAACATAGTGAG
CAGGTCCATCCCGAAGCTGAGGGAGACTCTAGGGAGGGAACCGACTTGTG
AGGAGATAGCAGCGCAGGTTTCCATCGATACGGACTCGAAGGAGGAGCGC
ATGATTCACGTCCCCATGTGGGTGAAGAACAAGTACAACATAGTGAGCAG
GTCCATCCCGAAGCTGAGGGAGACTCTAGGGAGGGAACCGACTTGTGAGG
AGATAGCAGCGCAGGTTTCCATCGATACGGACTCGAAGGTGGTGCTCACC
CCTAAGCGAGTCAAGGAGCTTCGGATGTGGGTCGCGTTCCACCGGAAGCA
CGAGTCCCTTGACGTGCCCGTGGAGGTCGGAACAAGGCTGCCGCTCGACT
GCTCCACGATAGAGCATGTGGTGCTCACCCCTAAGCGAGTCAAGGAGCTT
CGGATGTGGGTCGCGTTCCACCGGAAGCACGAGTCCCTTGACGTGCCCGT
GGAGGTCGGAACAAGGCTGCCGCTCGACTGCTCCACGATAGAGCATGGGG
TGAAGGCGGCCGAACCGTCGCTAGAGTCCACCTCCGAACTGGAAATACAG
CGAGATTTCCTCGAGAGCGGGGTGAAGGCGGCCGAACCGTCGCTAGAGTC
CACCTCCGAACTGGAAATACAGCGAGATTTCCTCGAGAGCTGCCTGGCCC
AAGACCTGAGCAGGATCCAACGAAAGATTCTGCGCATGAAAGTGGGCCTC
GGCGGAGAAAAGGGCAAGAACCGACAGGAGATCAGCAGGTGCCTGGCCCA
AGACCTGAGCAGGATCCAACGAAAGATTCTGCGCATGAAAGTGGGCCTCG
GCGGAGAAAAGGGCAAGAACCGACAGGAGATCAGCAGGGCGCTCAAGATG
CCGTTCAACAACGTTATCAGCGAGGAGAGAAAGGCGTTCTACAAGCTCAG
AGGCCTGCAGCGGGACGGCGAGTACCCCAGCTTCGAGGAGCTCAAATAGG
CGCTCAAGATGCCGTTCAACAACGTTATCAGCGAGGAGAGAAAGGCGTTC
TACAAGCTCAGAGGCCTGCAGCGGGACGGCGAGTACCCCAGCTTCGAGGA
GCTCAAATAG
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