mRNA_C-linearis_contig95.16997.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16997.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI) HSP 1 Score: 884 bits (2285), Expect = 1.950e-297 Identity = 640/1386 (46.18%), Postives = 738/1386 (53.25%), Query Frame = 1
Query: 148 MARLVDSLLRGRAQPSARNEAAAAVSDVRAFVRAWRPTPSSPSSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHSS--CPPAPNELSAGVLLKLAQRGVQLHNNIRKLPQFRDNGSGGSSGGGGQDWRSATVAYLRAAAASLVSLGSTSSPKDCANLCRLFSKAGELLMEDARDDIRALEMFEDAEKFFRRLPGSFYGAGPEGRDSRMPSLPAEDLVMAVHKASSRRVEVLSRTTGNVDQMVACYEQQLEVLALTMSNRSSPAGLGVSTAMHAASVGEERFKKGDCRGASRLLRYGTHSIGASWHARAVGGLALQALCRVDPLETGGSAKAPPAGHAVEMRRSLLFSLAHCCSKSGEHNHAIRCIEQLEVDGSRAVDGGGANTP-SFLFAKCKVLADAGELAGAFQAAESLVAATPADGVRAIETAGRCSGE-HDHLDLVTARMMCSLDDGSDRSLNLFASIVERFPGTPKAFDARVALLTGLAAAARLRSQGPGLGRRLDPDRGEKSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEIGPGADERAAAESAERAERTADAVVDVAEASKCKGLARTQVEAALEVLATFAEILQGLGDWEACARWCGRAIALAKGLSNRPAAPAEPAPASSSALFVASGFAGXXXXXXXXXXXXXXSTASGRGGGVVLLLASLLTLRGEMECRMGDFASSSRTLDQALAERPTYERAREVAFWSAACDPGRDESSLSARLSALTGPRSGLAAGAARQGFLAKCVGLVVGATTTSAXXXXXXXXXXXTEDEPERMNTGAATPGARMPPAAGPDDDPNHDTRVTMVQERLLEALLLSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSCETADDEA--------VAEGSG--------------------------------AAPTAVQVLASMVDSALQSTKRE----HGGGQEARVALTLSRVLLSIDKALLSAALLGISPSDDPDLEYLSKGCWNLAVRCCGSACDLPRADGKGCSARKNRAGNVSGTGTFTEGRRNPLLVLVPAFFKASRNWAELRSDANVAEALLTRQNCMVLTISATLEIYDD--AKSAEKTGPGSSSSEENGPPERLDMLERARKEVEVATGLNRELSSVNPEVAAEMRSILLVAEMSVLGRLRDAVAVRSLVASREPDFLRCSTTLLQYCVQLAEDMLDDAKSIAGLCRLCIRRCLEDDPVDTPALGGLYRRLLVSASSREEALLVVDDFMARARDLQEGTAGIPSDDVDYMAAKCYNLGLNLMDMGLAGEAERFVGKALGLVKLGSSRAFATRWEETIYQVYRTSLQLKGGHERPS----AAGCGSXXXXXISTGLRSEGFGRARGLLSTGLFPIP 4143
MARLVDSLLRGRAQ SAR+EAA AVSD+RAFV AWRP +P+S + SH S P+ N SA LLKLAQ ALEMFEDAE +F RLPGSFY G + MPSL AEDL+MAVHKASSRR+EVLSRTTGNVDQMV YE QL++L SPAGL +STA+HAASVGEERFKKGDCRGASR+LR LALQA+ +A P A H ++RR++LFSLAHCCSKSG+HN+AI+ I+ LE G GGG + P FLFAKCKVL DAG+L GA+ AA++LVA TPA + TAG GE D LDL AR++ S DD SDRSL+LFA+I RF GTPKA DARVALL+GLA AARLRS+G G G + EK G A A E+ RAE+TAD ++ AE S C +A QV++ALEVL TF E QG WE+CARWCGRAI LA G S P +S LLLASLLTLRGEMECR GDFASSS+TLDQALA PTY RAREVAFWSAA DP RDESSLSARLSAL+GPR+ L GA R+ +LA CVGLV G T+D +R + A + +D+RVTMVQERLLEALL+ PA + A ++ V EG G PTAVQV+ASMVDSALQ +E H G E A LSRVLLS+DK L A LGI P DDPD+ YLS GCWNLAVRCCGS CDLP D G SA K++ T TE +RN LLVL PAFFKASRNWAE+ SDAN+ +ALL RQNC+VL+I+ATLE+YD A +SSSE R DMLER+RKEVEVATGLNR LS V P++A EMRSILLVAEMSVLGRL D VAVRSLVASREPDFLRCST LLQYC+Q +EALLVVD+F A++RDLQEG G+PS+DVDY++AKCYNLGL L++M GEAERFVGKALGL+KLGSS AF RWEE I++VYRT+LQ KG + A G GS ST + F LSTGLFP+P
Sbjct: 1 MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRP--DAPASKDEQDSTEPEGRGRTR-------------------SHGSGGSDPSMNRPSADTLLKLAQ---------------------------------------------------------------------------------ALEMFEDAEGYFSRLPGSFYATG--WQKFGMPSLSAEDLIMAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTAR-----SPAGLRMSTAVHAASVGEERFKKGDCRGASRILR-----------------LALQAIGGDVGSGPTATASDPQAAHTGKLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGGWCAKGGGTDPPPKFLFAKCKVLTDAGDLTGAYTAAKALVALTPAPSGK--PTAGVGDGEPEDGLDLAAARLISSRDDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWWSPDGQHEK----------------------------------------GSAAAATAENEAVGRAEKTADDMI--AEISGCNNVATYQVDSALEVLVTFTEFFQGRDKWESCARWCGRAINLATGDSKGSTPKRVPHADKAS-----------------------------------LLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARRE-YLATCVGLVAGVRKA-------------TQDPDQRGESDAG--------------NARYDSRVTMVQERLLEALLVEAPATTDMEKEAEPTQAQPSTSSTPHEAGSDKDGPAGSAPVGGAGEDCGGIAPTPMVVEGEGDEDVGDVPVARTGADATPPGNRSAGSNGNGTDPVPTAVQVVASMVDSALQWVSKEEIKVHRGSAE-DAASVLSRVLLSVDKTLRRAGSLGIGPLDDPDIRYLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVDEAT--HTERKRNDLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLANATTSSSE------RRDMLERSRKEVEVATGLNRLLSDVKPDMATEMRSILLVAEMSVLGRLGDFVAVRSLVASREPDFLRCSTNLLQYCLQ------------------------------------------------DEALLVVDEFTAKSRDLQEGP-GMPSEDVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDAATATNPIMAGGSGSQ----ASTAIGGRAF------LSTGLFPMP 1085 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16997.1 >prot_C-linearis_contig95.16997.1 ID=prot_C-linearis_contig95.16997.1|Name=mRNA_C-linearis_contig95.16997.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1370bp MSVMDGEVTGSGSFPTVEQVNERATSMARLVDSLLRGRAQPSARNEAAAAback to top mRNA from alignment at C-linearis_contig95:443303..462520- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16997.1 ID=mRNA_C-linearis_contig95.16997.1|Name=mRNA_C-linearis_contig95.16997.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=19218bp|location=Sequence derived from alignment at C-linearis_contig95:443303..462520- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:443303..462520- >mRNA_C-linearis_contig95.16997.1 ID=mRNA_C-linearis_contig95.16997.1|Name=mRNA_C-linearis_contig95.16997.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=8220bp|location=Sequence derived from alignment at C-linearis_contig95:443303..462520- (Chordaria linearis ClinC8C monoicous)back to top |