prot_C-linearis_contig95.16996.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16996.1
Unique Nameprot_C-linearis_contig95.16996.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length453
Homology
BLAST of mRNA_C-linearis_contig95.16996.1 vs. uniprot
Match: D7G7N3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7N3_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 1.610e-83
Identity = 223/398 (56.03%), Postives = 247/398 (62.06%), Query Frame = 0
Query:   84 MCEVYERLSGVCVQMHVDESRGEIRFSPVAEIGSNSGSSXXXXXXXXXXXXXXXXXXXXVSSADQXXXXXXXXXXXXXXXXXXARYGCDPRNAWSPWSYAVVTVEGRTVLDVVPPEVTFGETLVTVRSDLDPFLHVEALTYVPANGEAASA---------GGGGVPVLPSEAXXXXXXXXXXHFLTFGLSSWNCAVVGSAFLLVGLLLLLQPVLXXXXXXXXXXXXXXXXXXXXXXXXX---------GRLRGRQWRYGQLETDWAGGSDFSDGGVYDAPEDDXXXXXXXXXXXXXXXXWGSEGGWHGEGAQTGVEMPASPAERDQLTARIPGRLSGGSASRFAEDSLRRRG-DGGALXXXXXN----------RDDGVGGIQMGPMGRSLGGESALV 452
            MCEVYERLS VCVQ+HVD++ GEI F+PVAEIGS   SS XXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXX     ARYGCDPRNAWSPW YAVVTVEGRTVLDVVPP +TF +TLVT RSDLDPFLHVEALTY P++G              G  G  + P  +           FLTFGLSSWN AVVGSAFL+VGLLLL+QPVL                    XXXXX         G+LRG QWRYGQLETDW  GS+F DGGVY+  +DD                WGSEG W GE   +GV  P SP+E +   A    RL      RF +DSLRRR  DGGAL  XXX           R D  GGIQ+GPMG+S  GE+ L+
Sbjct:    1 MCEVYERLSTVCVQVHVDDNNGEISFAPVAEIGSGDSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXET---ARYGCDPRNAWSPWGYAVVTVEGRTVLDVVPPTITFSKTLVTTRSDLDPFLHVEALTYDPSSGGIGGGXXXXXXXAEGASGEGISPEGSVGGGGGG---QFLTFGLSSWNSAVVGSAFLVVGLLLLVQPVLALKAWWREGGVGSDEGGPTGXXXXXXXXXRSGRGGKLRG-QWRYGQLETDWDDGSEFVDGGVYEGEDDDDDG-------------WGSEGDWQGE-TSSGVGRPPSPSEGNHFQASATPRLG----RRFMQDSLRRRAADGGALGTXXXXXXXXXXXXXIRGD-AGGIQLGPMGKSGRGEANLI 372          
BLAST of mRNA_C-linearis_contig95.16996.1 vs. uniprot
Match: A0A835YNJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.560e-15
Identity = 63/238 (26.47%), Postives = 94/238 (39.50%), Query Frame = 0
Query:   37 RKSNPILAEMETEWTPLTRIREEHAPMPAPETKCMQVFGGVHNYKTKMCEVYERLSGVCVQMHVDESRGEIRFSPVAEIGSNSGSSXXXXXXXXXXXXXXXXXXXXVSSADQXXXXXXXXXXXXXXXXXXARYGCDPRNAWSPWSYAVVTVEGRTVLDVVPPEVTFGETLVTVRSDLDPFLHVEALTYVPANGEAASAGGGGVPVLPSEAXXXXXXXXXXHFLTFGLSSWNCAVVGSA 274
            +KS    + + T + PLT  R   AP PAPETKCM    GV ++ ++ C  Y+ L+ +CVQ+ +    G    +P+     +SG                                                YGC    AWSP +YA + +EG +  DV  P V      +TVRS+LDP+LH + +T+                                  +TFGLSS +C +VG++
Sbjct:   95 KKSTTARSALATVYFPLTTTRRARAPQPAPETKCMVQQHGVLDHASQECVSYQALTSLCVQVRLSPG-GAASLAPMVRARKSSG---------------------------------------------VPSYGCSAAAAWSPVAYAPLPLEGHSTDDVAVPPVNLTALTITVRSELDPYLHAQVITH--------------------------------DSMTFGLSSRSCLIVGAS 254          
BLAST of mRNA_C-linearis_contig95.16996.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-9
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0
Query:   29 RNETKGAGRKSNPILAEMETEWTPLTRIREEHAPMPAPETKCMQV 73
            R   K A   + P+LAEM TEWTPLTRIREEHAPMPAPETKCMQV
Sbjct:  418 RRRMKKAPAAAAPVLAEMVTEWTPLTRIREEHAPMPAPETKCMQV 462          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16996.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7N3_ECTSI1.610e-8356.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNJ9_9STRA1.560e-1526.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JGC6_9PHAE1.220e-975.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 143..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 269..290
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 291..452
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..268
NoneNo IPR availableTMHMMTMhelixcoord: 262..284

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:437265..441925 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16996.1mRNA_C-linearis_contig95.16996.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 437265..441925 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16996.1 ID=prot_C-linearis_contig95.16996.1|Name=mRNA_C-linearis_contig95.16996.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=453bp
GGGGREREREREMRGRRLLPIRRWRRRRRNETKGAGRKSNPILAEMETEW
TPLTRIREEHAPMPAPETKCMQVFGGVHNYKTKMCEVYERLSGVCVQMHV
DESRGEIRFSPVAEIGSNSGSSNGSSSSSGSSGSSISGGSGGVSSADQDQ
ERLEEEEEEEAEAAAAARYGCDPRNAWSPWSYAVVTVEGRTVLDVVPPEV
TFGETLVTVRSDLDPFLHVEALTYVPANGEAASAGGGGVPVLPSEAGEGG
GGGGGGHFLTFGLSSWNCAVVGSAFLLVGLLLLLQPVLALRKWWRETGGA
PPPRPPDGGGAGGGRLRGRQWRYGQLETDWAGGSDFSDGGVYDAPEDDDE
DEDDDDDDDDDGDGWGSEGGWHGEGAQTGVEMPASPAERDQLTARIPGRL
SGGSASRFAEDSLRRRGDGGALGGGGGNRDDGVGGIQMGPMGRSLGGESA
LV*
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