mRNA_C-linearis_contig95.16993.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16993.1
Unique NamemRNA_C-linearis_contig95.16993.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.640e-7
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:  214 DRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGL 378
            D  LP+E+V +EPSR ECD EGRP P       +G P     + DRQCHLVFTGL
Sbjct:  367 DGHLPMEKVVIEPSRNECDFEGRPTPPT--DPKSGEPPIPS-STDRQCHLVFTGL 418
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BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 7.070e-6
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:   28 QHFGAQEALFGLGPSFPAVQPPLGGQPFK------SENGESSGSFGFGGPDFSAREGSGNSDSADGGGDRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGLEE 384
            QH GA+  + G  PS  A +PPL   P         ++G+ SG    G    S+   S + D+   G    LP+ +V VE SR+ECDLEGRP  + R+  +    TA+ P D R+ H+ FTGLE+
Sbjct:   32 QHVGARVTVSGKRPSSDAAEPPLEIPPHGLGLVGCGDSGDGSGGTASGVDSLSSTPES-SWDAELVGDFGRLPMGDVVVEVSRKECDLEGRP--ITRIGNSLTPITASSP-DVRESHIEFTGLEK 152
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ48_ECTSI2.640e-754.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7N5_ECTSI7.070e-637.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:413760..414541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930816.3366568-CDS-C-linearis_contig95:413759..4140201622930816.3366568-CDS-C-linearis_contig95:413759..414020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 413760..414020 +
1690881264.721914-CDS-C-linearis_contig95:413759..4140201690881264.721914-CDS-C-linearis_contig95:413759..414020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 413760..414020 +
1622930816.3590636-CDS-C-linearis_contig95:414418..4145411622930816.3590636-CDS-C-linearis_contig95:414418..414541Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 414419..414541 +
1690881264.7318232-CDS-C-linearis_contig95:414418..4145411690881264.7318232-CDS-C-linearis_contig95:414418..414541Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 414419..414541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16993.1prot_C-linearis_contig95.16993.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 413760..414541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16993.1

>prot_C-linearis_contig95.16993.1 ID=prot_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
HHHEHQHQPQHFGAQEALFGLGPSFPAVQPPLGGQPFKSENGESSGSFGF
GGPDFSAREGSGNSDSADGGGDRVLPIEEVRVEPSRRECDLEGRPFPVAR
MTTTNGAPTATRPADDRQCHLVFTGLEE
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mRNA from alignment at C-linearis_contig95:413760..414541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous)
CACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGGGCGCAGGAAGC
TCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACCACCACTGGGGG
GTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTAGCTTCGGTTTC
GGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAACAGTGACTCGGC
CGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGTCCGGGTGGAGC
CGTCGCGAAGAGTGAGTAAAAACCGCCGCTTGCAAGTTGAACGCCCCTCC
CCTCGTCTCGCTGATGTTGCTGTTGCTGCTGTTGCTGGTATGAACGAACG
GACAGTGTGCTGCCCCCCCCCCGTGCAATCGCGCTGTTGCTGCATATAAA
CCGGAAACATCAAGGAGCTCCGAGCGCGCAACCTGAGCAGTTTTGTTGCT
CGCGTGTCTTCGACCTTCGAACCTCGCGCGGCTTCATCCCCGTCATGCCG
GGGCTTATGCCCTCAACCATGCGACGTCGTGCAGAACACTCAATGGTGGG
AAGCGAGTCACTGCTTAAACACCCCCCCCCTCAAATATCTCGTGCCGTGA
CCCCGAAGAAGTAACCCCAACACACGCATGCTTGCGATTGTATCTTCTCT
GGTTCGCAGGAGTGCGACTTGGAGGGCCGCCCCTTCCCCGTGGCCCGCAT
GACCACCACCAACGGAGCTCCGACCGCCACCCGGCCCGCGGACGACCGGC
AGTGCCACCTCGTCTTCACCGGGCTGGAGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig95:413760..414541+

>mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous)
CACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGGGCGCAGGAAGC
TCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACCACCACTGGGGG
GTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTAGCTTCGGTTTC
GGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAACAGTGACTCGGC
CGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGTCCGGGTGGAGC
CGTCGCGAAGACACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGG
GCGCAGGAAGCTCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACC
ACCACTGGGGGGTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTA
GCTTCGGTTTCGGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAAC
AGTGACTCGGCCGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGT
CCGGGTGGAGCCGTCGCGAAGAGAGTGCGACTTGGAGGGCCGCCCCTTCC
CCGTGGCCCGCATGACCACCACCAACGGAGCTCCGACCGCCACCCGGCCC
GCGGACGACCGGCAGTGCCACCTCGTCTTCACCGGGCTGGAGGAGGAGTG
CGACTTGGAGGGCCGCCCCTTCCCCGTGGCCCGCATGACCACCACCAACG
GAGCTCCGACCGCCACCCGGCCCGCGGACGACCGGCAGTGCCACCTCGTC
TTCACCGGGCTGGAGGAG
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