mRNA_C-linearis_contig95.16987.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16987.1
Unique NamemRNA_C-linearis_contig95.16987.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.240e-12
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  264 WDGDIDPWAEAKSRALMQQFKDSVLDEDGLSVRVLTEESARRVADQAADGILDLAEREFRSRLHPPASSSSLFHPDDLDXXXXXXXXXXLAEVGGIVAGSSHRRAKENNDRLEEGGRIMDW 626
            W   +D     + +ALMQQFK+SVL EDGLS+R +++ESA+ +ADQAA G+LDL +REF SR+   +  SS  H                + V      +  R   E  D  EEGG  +DW
Sbjct:    2 WRQLVDASLAKQIQALMQQFKESVLGEDGLSLRAMSDESAKELADQAATGLLDLVDREFHSRISRASGGSSADHATAAHTGHPATDGRKRSVVSPFST-APERDRDEEEDSEEEGG--LDW 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K9_ECTSI2.240e-1239.67HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:360883..364531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D7G5K9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size650
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16987.1prot_C-linearis_contig95.16987.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 360912..364531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.5357745-UTR-C-linearis_contig95:360882..3609111622930815.5357745-UTR-C-linearis_contig95:360882..360911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 360883..360911 +
1690881264.3660471-UTR-C-linearis_contig95:360882..3609111690881264.3660471-UTR-C-linearis_contig95:360882..360911Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 360883..360911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.5637941-CDS-C-linearis_contig95:360911..3611871622930815.5637941-CDS-C-linearis_contig95:360911..361187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 360912..361187 +
1690881264.3760386-CDS-C-linearis_contig95:360911..3611871690881264.3760386-CDS-C-linearis_contig95:360911..361187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 360912..361187 +
1622930815.5806313-CDS-C-linearis_contig95:363836..3639561622930815.5806313-CDS-C-linearis_contig95:363836..363956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 363837..363956 +
1690881264.3846753-CDS-C-linearis_contig95:363836..3639561690881264.3846753-CDS-C-linearis_contig95:363836..363956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 363837..363956 +
1622930815.6446137-CDS-C-linearis_contig95:364306..3645311622930815.6446137-CDS-C-linearis_contig95:364306..364531Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 364307..364531 +
1690881264.3936632-CDS-C-linearis_contig95:364306..3645311690881264.3936632-CDS-C-linearis_contig95:364306..364531Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 364307..364531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16987.1

>prot_C-linearis_contig95.16987.1 ID=prot_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
MGWRPSIGLCHASVLLSEMRVQAFVPAAGRSTGTSTKGYRHHKSELKHSS
STSREERRQAKTRLEATPQQSDMGGDVWWDGDIDPWAEAKSRALMQQFKD
SVLDEDGLSVRVLTEESARRVADQAADGILDLAEREFRSRLHPPASSSSL
FHPDDLDLDLDLDLDLDLAEVGGIVAGSSHRRAKENNDRLEEGGRIMDWG
QAEERKG
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mRNA from alignment at C-linearis_contig95:360883..364531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16987.1 ID=mRNA_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3649bp|location=Sequence derived from alignment at C-linearis_contig95:360883..364531+ (Chordaria linearis ClinC8C monoicous)
AGGCAGTTGGACAGGCACGCAGAAAGAGGATGGGATGGAGGCCGTCAATT
GGGCTCTGCCATGCCTCCGTCCTCCTCTCCGAGATGAGGGTGCAGGCTTT
TGTCCCGGCGGCGGGCCGCAGCACCGGCACCAGCACCAAGGGGTACCGGC
ATCACAAGTCGGAGTTGAAGCACAGCAGCAGCACGTCCCGCGAGGAGCGA
CGACAAGCGAAGACTCGCTTGGAAGCCACGCCGCAGCAGAGCGACATGGG
TGGTGACGTCTGGTGGGATGGGGACATCGACCCCTGGGCTGAAGCCAAAA
GCAGGGTGAGGTGAAAAATCAGGGCGCAGCAACTCAGAATTCGCGCGTAC
GTAAGCAAAGCAGTTACGTATACTACGGTACGCTGTAAGCCGGAAGGAGC
AAACGGCAACGATTTCTTGGCGCCTTGTGTTTTGTTTCGCCTTTGACACG
ACCTATGCGACCAGAGAGTCGAGCCCGGAAAAGCGACATGTAGACTACGC
GCATAAATGGGCAAGTCCTGCGTGTGCCCATATGCCCAAGGCACACGCAC
GCTGTTGCAGCGGATGTTGGCGAGAGGTGGACATTCAACCCCACGAGCTC
GAGCAAATCTACCTCTGCCTCCTCTCTCTCGCCCTTGCCCCTCTACTCTC
CCTGAATTCCGAGGTCTACCCTATGCTAGCTACAGCACTGCTGTTATTTG
AATTTTGGTGCGCTTTGGCCGCAGCGCCGGTCCGCCAAGCTTCACCTCGT
CGTGCTATTCGTTCCATTGGCCTGGGGTAGCCTATACGGCGGTACACGTC
ACTAAATAATTTAATCGCTTACGTTCTTTTCCCCTCTCCTGGCTTGCTAC
GAGAAGCGAAAGAGTGTTATTTCCCCCCGTCCTTTTATCAAGAGTACTAC
TCTAGCCGGTCGCCCCGGTGGACTAGTCTAGTGGTTTCCTCAACCCACCA
GCAGCAAAGTCTGGAGTTCTATTCCAAGCAAAGGTGATTATTTTGCGACT
TTGCAGTGAAAGCGAATACATAGCTGAAAAAAGCTCGTGAGTACCAAACT
TCGACTTAGCACGTTGACGGGGGAAAGGGATGGCTGCACCCTTCTCGCGA
TAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCCTTAAAGAAACA
GAAAAAGAAGAAAAAAAGCCCCAGTGTTTACCCCCTCATGTGTGACCCCG
GTTGGTTCTAGTTGTACAGAAAAATACACTGAACAAGTGTAGTACTCTAA
ATACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGT
CGCCAATAAATGGGAAGAAAACACACACACACACACACACACACTCCCTT
CTTCCCCTCGCTGCCTTGGCAAGGCTTTTGCTTAGGCATGGCCCATAGCG
AGGGGGGGGTCTTTCTAGCGAGCAAGGCTAGACTCACCCTCAGGTGGACC
GATACCTTCTTGCTGCTGCGCACCCGCCGCGAGGCGTGCGCAGCGGTAGA
GTTGGGTCGGCACTGGTGCGCCAGGCACAAAAGTTCAGATGCACGGGTCT
TTATGGCCGTCGGTGTAGACAGCAATGCCCTTCTCATTTTTTTCGCGGAG
GCAGACGCCACCAGAAAGGTGAAGGACACTACGTACACGACCCTAGGTTT
GCTAGAGGGAGCTGCACTGTCTCGGTAAACTGGCTTCGCTTCGCCATCAA
AGGAGAGGGGTGGGTGGCGACGAGCTGAAGACTGGGCTGGTTGACCCCTT
CGGCGCGATAATTTGTTTTTTTGAAGACCAAGCACCCTAAGTGCAACGAG
GGAGAAAGCGAGGGACCGGCTGGGAAGGACAGCGACGAGAGCTTGTACGG
ATGGAGCCGGCCGAGTGTAGTCGTGCTAGGACTGGCCACAGCGGCACCGG
AGCAGTGGCACCGGAGCATGCGGACGACATGGAACCGTGGCGCACGGACA
AACATCATGTGTTGGCAATTATTTCTTTTTTTTCTAGATGTTGGTGCTGG
GTTTTTGTGATGACGTCACTGGTTTTGTAGAGAGACGCCACAGCGATGGC
GTGAATACCCCGGGTGCCTTAATTGTGTACCTGCATCATGGAAGACCCTT
CAATGCGGAACGAGTCCTAATCAGTGTCGATGTTTACAATACTGTGCCTA
ACACAGACGTTCGGGATAGACTGGGGTTATTGTCAATTGATGTGATGGCT
TTGTTTGGTTTGCTGTTCTTTTTCACTGTATGTCCGCGGAATGTCATTCT
GGCAGCACTTCAGACAGCAGCTGTGTGCTCCATTCTTATTCCCCTGCCTA
CCGTGTGTTTTTGTACAGACAGCACTTCAGACAGCAGTTCCGCTGTAGTC
GGCTAATTCATTGGTAGGAAGTGGGAAGGGGGGGGTCGATGCTGCTATAG
TCGAATGGAGACTGCGGGCTTGCAGTTCAGATTTAGACACGCATAACTTG
CTGTAGGTATTTAAGGTGTACCTCTTCGGGCTTGTTTACCCTTTCCCTGC
TAAAAGTGTGCGTGTTCTTTAGGATTCTCTGATAGCTCTAGCACTTTTGT
GACCACGGGCTGTGATCTTGCTAGATTTTAGGGATTATCAACTGTAACGA
GTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACAACATAGA
CTGCATTTCCACCCTTCCAGTGTGGCAACGACTTTTGCCCTCGCATCTAC
CAGTATGTATCTACATATGCATATACTCCTGTGATGGACCAGTACGACCA
AATCGACGTGGAAATGGGGTGTTTTGAGGTAGCATTTCACCGGGAGTTTT
AGGTTCGGAGACATCTATGTATCTACATGTAGGACTACCACCACCACCAC
CACCAACAACAACAACAACAACAACAGCAACGACGACGACGACGACGACG
ACATAAACTTGACCTTTGCTGCCCCCCCCACTCCAATACCACCCGAACAC
CCAGGCGTTGATGCAGCAGTTCAAGGACAGCGTGTTGGATGAAGATGGGT
TATCCGTGCGTGTCTTAACCGAAGAGAGCGCTAGGAGGGTGGCTGACCAA
GCTGCGGACGGCATTCTGGACCTGGTAAGTCGGCCACAACGGTAGCAACA
ATACCAGGCAGGTGGAACCACCATCTGTTACCCCCTATATTGCCCCCCGA
ACACGCACCTTTCGCCCCGAGCTTCGAAGCTCGTGTGCCTCGACAGCATC
AAAGCTACCGACGTGTGTGTCTGGGGGTTTAGCAGGCGCAGCAATGCTGC
TAACCTAACACAAAGTGCTGCTGTCCCTTGTGTTGTCTTGCACTCAATAC
CGTCGACGTGACGTAGCCAAACTCACCGCACCCCCGACACAATCACTGGG
CCCCCCGTCACACACACACACACACACACATACATCTCCCAACTCTCACT
CCAACCCTATTCCTCCAATTGCAGGCGGAGCGAGAGTTTAGAAGTAGACT
CCACCCCCCGGCGAGTAGCAGCAGCTTGTTCCATCCAGACGATCTCGATC
TCGATCTCGATCTCGATCTCGATCTCGATCTCGCCGAGGTCGGTGGAATC
GTTGCCGGATCGAGCCACCGCCGTGCAAAAGAAAACAACGACAGGCTAGA
AGAGGGCGGGAGGATCATGGATTGGGGCCAGGCGGAGGAGAGAAAGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig95:360883..364531+

>mRNA_C-linearis_contig95.16987.1 ID=mRNA_C-linearis_contig95.16987.1|Name=mRNA_C-linearis_contig95.16987.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig95:360883..364531+ (Chordaria linearis ClinC8C monoicous)
ATGGGATGGAGGCCGTCAATTGGGCTCTGCCATGCCTCCGTCCTCCTCTC
CGAGATGAGGGTGCAGGCTTTTGTCCCGGCGGCGGGCCGCAGCACCGGCA
CCAGCACCAAGGGGTACCGGCATCACAAGTCGGAGTTGAAGCACAGCAGC
AGCACGTCCCGCGAGGAGCGACGACAAGCGAAGACTCGCTTGGAAGCCAC
GCCGCAGCAGAGCGACATGGGTGGTGACGTCTGGTGGGATGGGGACATCG
ACCCCTGGGCTGAAGCCAAAAGCAGGATGGGATGGAGGCCGTCAATTGGG
CTCTGCCATGCCTCCGTCCTCCTCTCCGAGATGAGGGTGCAGGCTTTTGT
CCCGGCGGCGGGCCGCAGCACCGGCACCAGCACCAAGGGGTACCGGCATC
ACAAGTCGGAGTTGAAGCACAGCAGCAGCACGTCCCGCGAGGAGCGACGA
CAAGCGAAGACTCGCTTGGAAGCCACGCCGCAGCAGAGCGACATGGGTGG
TGACGTCTGGTGGGATGGGGACATCGACCCCTGGGCTGAAGCCAAAAGCA
GGGCGTTGATGCAGCAGTTCAAGGACAGCGTGTTGGATGAAGATGGGTTA
TCCGTGCGTGTCTTAACCGAAGAGAGCGCTAGGAGGGTGGCTGACCAAGC
TGCGGACGGCATTCTGGACCTGGCGTTGATGCAGCAGTTCAAGGACAGCG
TGTTGGATGAAGATGGGTTATCCGTGCGTGTCTTAACCGAAGAGAGCGCT
AGGAGGGTGGCTGACCAAGCTGCGGACGGCATTCTGGACCTGGCGGAGCG
AGAGTTTAGAAGTAGACTCCACCCCCCGGCGAGTAGCAGCAGCTTGTTCC
ATCCAGACGATCTCGATCTCGATCTCGATCTCGATCTCGATCTCGATCTC
GCCGAGGTCGGTGGAATCGTTGCCGGATCGAGCCACCGCCGTGCAAAAGA
AAACAACGACAGGCTAGAAGAGGGCGGGAGGATCATGGATTGGGGCCAGG
CGGAGGAGAGAAAGGGGGCGGAGCGAGAGTTTAGAAGTAGACTCCACCCC
CCGGCGAGTAGCAGCAGCTTGTTCCATCCAGACGATCTCGATCTCGATCT
CGATCTCGATCTCGATCTCGATCTCGCCGAGGTCGGTGGAATCGTTGCCG
GATCGAGCCACCGCCGTGCAAAAGAAAACAACGACAGGCTAGAAGAGGGC
GGGAGGATCATGGATTGGGGCCAGGCGGAGGAGAGAAAGGGG
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