mRNA_C-linearis_contig95.16981.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16981.1
Unique NamemRNA_C-linearis_contig95.16981.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Match: D7FLY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY5_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 2.810e-71
Identity = 125/193 (64.77%), Postives = 144/193 (74.61%), Query Frame = 2 
Query:  251 MVDPAESSKRLEMHVKRMSRVQVSEEPTPD-GMRSNMASPDVAYVGSMLGEEEGFPTGVSRMRRRVLEAPLGPKIGYHELEDEKEEGDEEWMTGEASQLSGAGTRGSSNWVLKIMLPIFLIIGIIILHNWWTDIKKHASNAAKGVGDVFDRRALTLALQKEQEEQARPAEGAGQGL--GQAGAKAREAGLPDK 820
            MVD   SSKRLEM VK +S V V+EEP P     +NMASPDV ++GSM+GEE+ FPTG  +MRRRV+E PLG KIGYHELEDEKE+ DEEWMTGEASQ+SG GTRGS+NWVLK++ PI LI+GII +HNWWTD+K H SNAAK V DVFDRRAL      E+EE    AEG GQG   G+ G    E  LPDK
Sbjct:    1 MVDREASSKRLEMRVKTLSSVTVAEEPNPSRDAATNMASPDVDHIGSMVGEEDAFPTG--QMRRRVIEPPLGSKIGYHELEDEKEDADEEWMTGEASQVSGGGTRGSNNWVLKVLFPILLIVGIICMHNWWTDVKYHVSNAAKAVSDVFDRRALL-----EEEE----AEGRGQGRFSGEEGGAVSEP-LPDK 181
[Close]
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Match: A0A6H5JNP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP4_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 9.970e-69
Identity = 123/192 (64.06%), Postives = 141/192 (73.44%), Query Frame = 2 
Query:  251 MVDPAESSKRLEMHVKRMSRVQ-VSEEPTPD-GMRSNMASPDVAYVGSMLGEEEGFPTGVSRMRRRVLEAPLGPKIGYHELEDEKEEGDEEWMTGEASQLSGAGTRGSSNWVLKIMLPIFLIIGIIILHNWWTDIKKHASNAAKGVGDVFDRRALTLALQKEQEEQARPAEGAGQGLGQAGAKAREAGLPDK 820
            MVD   SSKRLEM VK +S V  V+EEP P     +NMASPDV ++GSM+GEE+ FPTG   MRRRV+E PLG KIGYHELEDEKE+ DEEWMTGEASQ+SG GTRGS+NW+LK++ PI LI+GII +HNWWTD+K H SNAAK V DVFDRRAL      E+EE    AEG GQG       A  A LPDK
Sbjct:    1 MVDREASSKRLEMRVKSLSSVTAVAEEPNPSRDAATNMASPDVDHIGSMVGEEDAFPTG---MRRRVIEPPLGSKIGYHELEDEKEDADEEWMTGEASQVSGGGTRGSNNWMLKVVFPILLIVGIICMHNWWTDVKYHVSNAAKAVSDVFDRRALL-----EEEE----AEGRGQGRFSEEEGAVSAPLPDK 180
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY5_ECTSI2.810e-7164.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNP4_9PHAE9.970e-6964.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:291860..296738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size820
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16981.1prot_C-linearis_contig95.16981.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 292110..296738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.8590128-UTR-C-linearis_contig95:291859..2921091622930813.8590128-UTR-C-linearis_contig95:291859..292109Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 291860..292109 +
1690881263.3805907-UTR-C-linearis_contig95:291859..2921091690881263.3805907-UTR-C-linearis_contig95:291859..292109Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 291860..292109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.8728595-CDS-C-linearis_contig95:292109..2922171622930813.8728595-CDS-C-linearis_contig95:292109..292217Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 292110..292217 +
1690881263.3946373-CDS-C-linearis_contig95:292109..2922171690881263.3946373-CDS-C-linearis_contig95:292109..292217Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 292110..292217 +
1622930813.8873477-CDS-C-linearis_contig95:293819..2938911622930813.8873477-CDS-C-linearis_contig95:293819..293891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 293820..293891 +
1690881263.4040523-CDS-C-linearis_contig95:293819..2938911690881263.4040523-CDS-C-linearis_contig95:293819..293891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 293820..293891 +
1622930813.9075558-CDS-C-linearis_contig95:295908..2960821622930813.9075558-CDS-C-linearis_contig95:295908..296082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 295909..296082 +
1690881263.4139452-CDS-C-linearis_contig95:295908..2960821690881263.4139452-CDS-C-linearis_contig95:295908..296082Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 295909..296082 +
1622930813.9239147-CDS-C-linearis_contig95:296453..2966481622930813.9239147-CDS-C-linearis_contig95:296453..296648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 296454..296648 +
1690881263.4238281-CDS-C-linearis_contig95:296453..2966481690881263.4238281-CDS-C-linearis_contig95:296453..296648Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 296454..296648 +
1622930813.9385438-CDS-C-linearis_contig95:296717..2967381622930813.9385438-CDS-C-linearis_contig95:296717..296738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 296718..296738 +
1690881263.4406545-CDS-C-linearis_contig95:296717..2967381690881263.4406545-CDS-C-linearis_contig95:296717..296738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 296718..296738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16981.1

>prot_C-linearis_contig95.16981.1 ID=prot_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
MVDPAESSKRLEMHVKRMSRVQVSEEPTPDGMRSNMASPDVAYVGSMLGE
EEGFPTGVSRMRRRVLEAPLGPKIGYHELEDEKEEGDEEWMTGEASQLSG
AGTRGSSNWVLKIMLPIFLIIGIIILHNWWTDIKKHASNAAKGVGDVFDR
RALTLALQKEQEEQARPAEGAGQGLGQAGAKAREAGLPDK
back to top

mRNA from alignment at C-linearis_contig95:291860..296738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16981.1 ID=mRNA_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4879bp|location=Sequence derived from alignment at C-linearis_contig95:291860..296738+ (Chordaria linearis ClinC8C monoicous)
TGGAAGGGAGTGCCCACGACAGAACAGGAGGTTCACGCATACGTGCATCA
TCTCTTTTTTTTCTCCCCTCACAGTAGAAGGCCGAACGTGCAGGCTAGAA
CTGCACATCATACGAGAGAGAGAGATAGAAAAGGCTGTTCCTTGATTTCC
TTCTTTCTTGTGTCTCGTCTTCTGGTACTGACTGAGAACCAGTATTTAGC
TTGAGCGAGAGCTAACAGAAAACGGAGCTTGCGAGGACAAAATAGCAGCC
ATGGTGGACCCTGCCGAGAGCTCGAAGCGATTGGAGATGCACGTGAAGCG
TATGTCGAGGGTGCAGGTGTCTGAAGAGCCAACACCTGACGGAATGCGCT
CTAACATGGTGAGGAGAGAGGGAGAGAGAGAAAGAGATGAACCCTTTGAT
GAGTGAGAGAGGCTGTGTGTATTAGTAGAGAACATTCTGTGCGCTCGAGT
TGGCGCGAGCTCTGACGGGACGCTGCGAAAGGTTGGAGGTCTTCGTCTAC
CCTCAGCCCTTAGCCCTATCTCGGGCATCTGTCCCGCTGGCCCAGGGAGT
GCATCTGTATCTGATGCTGAATACGCCGCAGTTAGCTTATTTGATTTCCT
TTGCAGTCTACGCCGGCAGTCTAGAACGAGGATGTTGTGCTGTAGATACA
ACTCGGGGTGGGGCGCCTGCTATCCTCCAGGGGGGCGATATTGCAACAGG
GGCCAACACGAGTGCATACGTGTCGAATAAAATATAAGAGAAGAGAAGAG
CAGAGAGGAAGGAAACGTCTGAAATACGTAGTAAGTGTGTCTGGGTGTGT
GTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTTCCG
ATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTACTACAC
TTGCTGTTCAGTGCATTTTTCTGTGCTACTAGAACCAACCGGGGTCACAC
AGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTCTTCTGTTTCTTTTTT
GCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGG
TGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGAAGTTTGGTACTC
ACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTGCAAAGTCGCAAAATA
AACACCTTTGCTTGGAATTGAACCCAGACTTTGCTGCTAGTGGGTTCGAG
GTTAAACCACTAGTCCACCGGGGCGACCAAGTAATGCCTGGTAAACAATA
ACCCTTGTTGTATCTGTCCGGCACAACTTCCTGAAAAAATCGATTTCAGT
CCATACGCATGGATTCATGAATTTGCCCCCCCACAAATCACGTTCATCTC
TGTGTGGGCTTCCTTGGCCAACTTCTAGCCTAGTTTCCGCGAGCACGAGC
GCGAGCATGAGCCTAAGCATGTGTGTGTGTGTGTGTGTGTTGTCTTCACA
TTAAAAACCATCCCGTCTCTCTCCACCCAGTACCCCCCTTTGTCCGTACT
GATCCAACAGACACGGCCGATTCCCGTGGTCACAGGTTAACTTATCCTCT
ACAAGGGTATACTAAAAATAAAATGGACCCGAAGGGTCAGCAGAACGATA
AAATCAAAACAAAATCATGAGCGAGACTTGTCGTGGTTTGGTTTGCCTTT
TGACGAAACATCTGGAACGTCCGTCGACCAAACACCAAACACGTTCTCGC
ACGACCGACTGCAGCTGTAGATGTAGCAGTGTCGGAACGGGGCTGCGTTG
CGCATTCGCTCACGCTTTTGTTGGCGCGATCAAAATGCCCCAGCAAAGGC
TGCATTCGCTGTGCCGTGCACCGTTGTGTTCCGCACGTGCACGGTACATG
GGTACTCTGGATCTACGGTACTCGCATACTTTACCGGCAACCGAACTTGA
ACATTGACACTGATACTTGGCCATGACCCGATGGTTTTGATACATATCAC
ATGGAAGCAGGCCTCTCCCGACGTCGCGTACGTGGGAAGCATGCTTGGCG
AGGAGGAAGGCTTCCCAACAGGGGTAAGTCGGGTTTCAGTCACACTGCAG
TTACAGCAGTTCAGCGCTCTAAAAGTCTACGGTATTCGTGACGTTGTTGT
GGCTTGGGTTACAACGCAATTTCCAAACTTGTTCCGGCCGGCCGCGAGTA
GTCGATGCTGCCAACGTATGCGGTCAACGGCGCCAACACCAATACCAACA
ACCGTCAGAAACGACCCCTGCTCCGCTTTGAGCCGCCAAGCACACACAGC
AGCAGTAGCGATGTTGAAGTCGATGGTAAGCGGTGTCTGATACGTCTGAT
TGCGGCTCCTGCTTGCGTATGCTGTGTTGAGCTGGGCTGGGGCGTGTGGT
TCTTGCGCTTGACCGGCGTTCTAGTAATAGCACCTAGGCTTGTGAGGGGA
GAGGTTCTTCTTCTACCTCTATACGTGCCCGTCGTGCGACGGTGTTGTGC
CTCATCCGGACGATATAGTACCAAACGTATGGCTCATCTGCTATCGACAC
AGCTCTTTTTACTGGAAACGGGGCCTTCTGATTTCGCTCAGCGGCCGAAA
AGTGGGAGGGAGGGCACTACTACAAGATTAGTATTGCATCGGTGTGGGCG
TGTCACAGCAGTAGCTCCGGAACGAAATAGCTCGGGATGTATGTAGGTGT
AGCATGGTCGTCGAGAAGGCCAGGGTTTACAGCGCGAAGAACCACCCTAA
AGGTCAAACCATCCCAGACAAACAACAAAGTTTCAGTAGTACTAGGGTTA
CATTTAGGATGAAAACAGGGACGCAGGCGTGAAAACCCCCACGCAAATGC
CGAATAGTTGCAGTTGAACTCCAAAGGCTTAAATCGTGTACCACTTTGCA
AGCGTGTCTTCTCCTCCTTTTGACAATACGCTGTAGTACTACACCCCATA
AGTTTTGGGACTTTTTGTGCCCACACAGCAGTAGGATAACATATAACTCA
TGAATCACTACGTGCACGAACTGTCGAGATTTTTGGAGGTACTACATCGG
TTCCCCAGATATTTTTTTTCGCTAGTTGGGGTAGACTATGTAGCTGCTGG
CGTTTGGTGTTGAAATGTCACGTGGTGTTTTGAATGTGAGCCAGGTTGAG
GGGACCTTCACCACTCGCAGTTGGTGTCAGACCTTCGCGAAATCGGTAAG
GAGTAAGGAGTGGCGCACATGTCGCTGATGCGCTGTTTGCTGGGGGTGGA
AACAAACAGGTGGCAATCGAATGCGGAACTCAACTAGCATGCCACTGCCA
CTGATCGTAAGCCTGCTCTAAGGGGCCCACTACTGTTGCGTGCTTTGTCT
GGCGCATGAAGCCTGAGCGTGTGCTCCTGCAACACTGCATTTATCTGTGC
AATTTGCCATCGCTCTGGCTCCTGCCTGTCTCTCCCTCTCCCTCTGCCAT
CACTACCGCCAGCACCACCACGGCCGCTGCTTCGATGTACCCATCCATCC
CTCCTACTGTACCGTTTTCAACTGGTGCTGCTCTCACTATGCCGCTGCAT
CTCTCTCATGCTGCGTTCGACATCAACAACTCGAAAAAATTCTCGTCCGT
ACGGGAACCAACTATCGGCCGACGAGCGTAGTGTCGAGAAAAGTTTGAGT
TAAGTTGATCTCAGCGTGGTTCAGTTCAGTTCCCCCTGGCTACCTACCTA
CCTACCGTTACCCGGCTGCCTCGCCAAATCTCGTACCTGCACTCCACGCG
ATCGATCAACGACCACCACCAATCTGGCCTGTGCTCTTTTTGTATACCAT
GTCTAAGAGGCCCGATGACGCAGAAATTCAAAATTGCCATCACGCACACC
ATGTCTCACCTAGATGCCTAAAAGTAAAACAGAGTGATGCACGGCGCGGA
GCAAAGCCGAACGCAAAGCTAGACTTGGAAGCGCGCCTTGCTTGGGACCG
GACCGGCCACAGCAGAAAGGGAAACAAAACCAAGGAGAACCAACCGAAAA
CCGCACGGAGATAAAAAAACACACTGCTGTCTTGTCTGTTACTGCTGTTG
TAACTTTTTTTGTTGGCTCGGGATGATTTTGATTCCGTTGCTGCGGCAGA
TGCGGCGGCGAGTGCTGGAGGCGCCTCTGGGACCTAAGATCGGGTACCAT
GAGCTAGAAGACGAGAAGGAGGAGGGCGACGAGGAGTGGATGACCGGCGA
GGCTTCGCAGCTCAGCGGGGCCGGCACGCGGGGCAGCAGCAACTGGGTGC
TCAAGATCATGCTGCCGATTTTTGTGAGCGCGTTTTCCTTATTTTTTTTA
TTTTTTGTGAGTGCTTCCATTGGAGTGTACTCCGGAGTATGTTTTTTTAA
ACTACTCCAAGTGGTGTTGATGTTGCTGGTTGAGAGGTGCTACGTATTAC
ATGTTGGTGGTGCCTCTAGGAGGGCTTGCAGGGGTAGCCTCGGAGCTCCG
TGAATGAAGGTCTCGAAAGGGGTGCCGTGGATGCGGGTCAACCGTATGAT
ATGGTCAATTTGACTACATAAGGGACAAGCAACCACTGCTGTGCATTTCG
CCCCCTCCAACCATATATGCACCCTCTAACCTTACATGCACACCCCATCT
TACACCCCCCCTTCTTTCCCTCGGGCATGGTGTTGACAACTCAGCTCATT
ATCGGCATCATCATCCTGCACAACTGGTGGACGGACATCAAGAAGCACGC
CTCCAACGCCGCCAAGGGCGTGGGCGACGTCTTCGACCGGCGCGCTCTCA
CCCTCGCCCTGCAGAAAGAACAAGAAGAGCAAGCGCGGCCGGCGGAGGGG
GCGGGGCAAGGGCTGGGACAGGCCGGGGCAAAGGCAAGGGTCGCGGGAGG
TTCGGCGTTGGGGCGGGTGGGTGGCGTGGCCGGCGACGGGGCGCGGCAAG
CGCAAAAGGAAGCGGGGCTTCCAGACAAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig95:291860..296738+

>mRNA_C-linearis_contig95.16981.1 ID=mRNA_C-linearis_contig95.16981.1|Name=mRNA_C-linearis_contig95.16981.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig95:291860..296738+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGACCCTGCCGAGAGCTCGAAGCGATTGGAGATGCACGTGAAGCG
TATGTCGAGGGTGCAGGTGTCTGAAGAGCCAACACCTGACGGAATGCGCT
CTAACATGATGGTGGACCCTGCCGAGAGCTCGAAGCGATTGGAGATGCAC
GTGAAGCGTATGTCGAGGGTGCAGGTGTCTGAAGAGCCAACACCTGACGG
AATGCGCTCTAACATGGCCTCTCCCGACGTCGCGTACGTGGGAAGCATGC
TTGGCGAGGAGGAAGGCTTCCCAACAGGGGTAAGTCGGGCCTCTCCCGAC
GTCGCGTACGTGGGAAGCATGCTTGGCGAGGAGGAAGGCTTCCCAACAGG
GGTAAGTCGGATGCGGCGGCGAGTGCTGGAGGCGCCTCTGGGACCTAAGA
TCGGGTACCATGAGCTAGAAGACGAGAAGGAGGAGGGCGACGAGGAGTGG
ATGACCGGCGAGGCTTCGCAGCTCAGCGGGGCCGGCACGCGGGGCAGCAG
CAACTGGGTGCTCAAGATCATGCTGCCGATTTTTATGCGGCGGCGAGTGC
TGGAGGCGCCTCTGGGACCTAAGATCGGGTACCATGAGCTAGAAGACGAG
AAGGAGGAGGGCGACGAGGAGTGGATGACCGGCGAGGCTTCGCAGCTCAG
CGGGGCCGGCACGCGGGGCAGCAGCAACTGGGTGCTCAAGATCATGCTGC
CGATTTTTCTCATTATCGGCATCATCATCCTGCACAACTGGTGGACGGAC
ATCAAGAAGCACGCCTCCAACGCCGCCAAGGGCGTGGGCGACGTCTTCGA
CCGGCGCGCTCTCACCCTCGCCCTGCAGAAAGAACAAGAAGAGCAAGCGC
GGCCGGCGGAGGGGGCGGGGCAAGGGCTGGGACAGGCCGGGGCAAAGGCA
AGGCTCATTATCGGCATCATCATCCTGCACAACTGGTGGACGGACATCAA
GAAGCACGCCTCCAACGCCGCCAAGGGCGTGGGCGACGTCTTCGACCGGC
GCGCTCTCACCCTCGCCCTGCAGAAAGAACAAGAAGAGCAAGCGCGGCCG
GCGGAGGGGGCGGGGCAAGGGCTGGGACAGGCCGGGGCAAAGGCAAGGGA
AGCGGGGCTTCCAGACAAGGAAGCGGGGCTTCCAGACAAG
back to top