mRNA_C-linearis_contig95.16980.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16980.1
Unique NamemRNA_C-linearis_contig95.16980.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16980.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.540e-29
Identity = 67/143 (46.85%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:    1 EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALFGTAFHTAQRGFDLSCALAAQVLSLPGGKGLIFNFHFGKTLRDSSLAIVARRDRACHELCPVRAVQVFAIVANSMGWQLREGYMFPKFEAGGSR 429
            EQ+RVGV + QA  ML  V + L+R MR  A    +   R+E +RD+ALF  AF   +RG DLS  + +QVL LP G+GLIFNF FGKTLRDS  A+V   D AC  +C V  V  +   A  +GW L +G++FP     G+R
Sbjct:  815 EQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAVVVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVVLLDGTR 957
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRN9_9PHAE2.540e-2946.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:281038..281670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog83406.HDN1F_17240
Preferred nametnpS
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the 'phage' integrase family
EggNOG OGs1MWGG@1224,1RNMU@1236,COG0582@1,COG0582@2
Ec32 ortholog descriptionimm upregulated 7
Ec32 orthologEc-21_006530.2
COG Functional cat.L
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.8086016-CDS-C-linearis_contig95:281037..2816701622930813.8086016-CDS-C-linearis_contig95:281037..281670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 281038..281670 +
1690881263.369827-CDS-C-linearis_contig95:281037..2816701690881263.369827-CDS-C-linearis_contig95:281037..281670Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 281038..281670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16980.1prot_C-linearis_contig95.16980.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 281038..281670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16980.1

>prot_C-linearis_contig95.16980.1 ID=prot_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=211bp
EQRRVGVTIEQARPMLTPVPLPLIRYMRQSASRLGTAKARVERSRDIALF
GTAFHTAQRGFDLSCALAAQVLSLPGGKGLIFNFHFGKTLRDSSLAIVAR
RDRACHELCPVRAVQVFAIVANSMGWQLREGYMFPKFEAGGSRSRSPWNP
KDMALALQSNVAAAGLEEGRKYSMHYFRIGGAVSQAFTGTAVDAPMGLVG
WKTRGVAQRYV
back to top

mRNA from alignment at C-linearis_contig95:281038..281670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)
GAACAACGTAGGGTTGGCGTCACGATAGAGCAGGCCCGGCCGATGCTGAC
CCCGGTGCCGCTACCCCTCATTCGGTACATGCGGCAGAGCGCTAGCCGGC
TCGGGACCGCTAAGGCTAGGGTAGAGAGGAGTAGAGACATCGCCCTGTTC
GGGACAGCTTTTCATACTGCGCAAAGGGGTTTCGACCTGTCGTGCGCACT
TGCCGCGCAAGTTCTGAGTCTGCCGGGAGGCAAGGGCCTCATCTTCAATT
TCCATTTTGGCAAGACGCTGCGCGACTCGTCGCTAGCAATCGTAGCGCGG
CGCGACCGCGCTTGCCACGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTT
TGCCATCGTGGCCAACTCCATGGGCTGGCAGCTGCGGGAAGGGTACATGT
TTCCCAAGTTCGAAGCCGGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCC
AAAGACATGGCGCTAGCTCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGA
GGAGGGGCGCAAGTATTCTATGCATTATTTTCGCATAGGAGGGGCCGTTA
GCCAAGCCTTTACCGGCACGGCGGTCGACGCCCCCATGGGTTTAGTGGGG
TGGAAAACTCGGGGGGTAGCTCAGCGGTACGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig95:281038..281670+

>mRNA_C-linearis_contig95.16980.1 ID=mRNA_C-linearis_contig95.16980.1|Name=mRNA_C-linearis_contig95.16980.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at C-linearis_contig95:281038..281670+ (Chordaria linearis ClinC8C monoicous)
GAACAACGTAGGGTTGGCGTCACGATAGAGCAGGCCCGGCCGATGCTGAC
CCCGGTGCCGCTACCCCTCATTCGGTACATGCGGCAGAGCGCTAGCCGGC
TCGGGACCGCTAAGGCTAGGGTAGAGAGGAGTAGAGACATCGCCCTGTTC
GGGACAGCTTTTCATACTGCGCAAAGGGGTTTCGACCTGTCGTGCGCACT
TGCCGCGCAAGTTCTGAGTCTGCCGGGAGGCAAGGGCCTCATCTTCAATT
TCCATTTTGGCAAGACGCTGCGCGACTCGTCGCTAGCAATCGTAGCGCGG
CGCGACCGCGCTTGCCACGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTT
TGCCATCGTGGCCAACTCCATGGGCTGGCAGCTGCGGGAAGGGTACATGT
TTCCCAAGTTCGAAGCCGGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCC
AAAGACATGGCGCTAGCTCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGA
GGAGGGGCGCAAGTATTCTATGCATTATTTTCGCATAGGAGGGGCCGTTA
GCCAAGCCTTTACCGGCACGGCGGTCGACGCCCCCATGGGTTTAGTGGGG
TGGAAAACTCGGGGGGTAGCTCAGCGGTACGTCGAACAACGTAGGGTTGG
CGTCACGATAGAGCAGGCCCGGCCGATGCTGACCCCGGTGCCGCTACCCC
TCATTCGGTACATGCGGCAGAGCGCTAGCCGGCTCGGGACCGCTAAGGCT
AGGGTAGAGAGGAGTAGAGACATCGCCCTGTTCGGGACAGCTTTTCATAC
TGCGCAAAGGGGTTTCGACCTGTCGTGCGCACTTGCCGCGCAAGTTCTGA
GTCTGCCGGGAGGCAAGGGCCTCATCTTCAATTTCCATTTTGGCAAGACG
CTGCGCGACTCGTCGCTAGCAATCGTAGCGCGGCGCGACCGCGCTTGCCA
CGAGTTGTGCCCCGTACGGGCAGTGCAAGTGTTTGCCATCGTGGCCAACT
CCATGGGCTGGCAGCTGCGGGAAGGGTACATGTTTCCCAAGTTCGAAGCC
GGCGGTTCGAGAAGCCGCTCGCCGTGGAATCCCAAAGACATGGCGCTAGC
TCTCCAGTCGAACGTAGCCGCAGCGGGGCTAGAGGAGGGGCGCAAGTATT
CTATGCATTATTTTCGCATAGGAGGGGCCGTTAGCCAAGCCTTTACCGGC
ACGGCGGTCGACGCCCCCATGGGTTTAGTGGGGTGGAAAACTCGGGGGGT
AGCTCAGCGGTACGTC
back to top