mRNA_C-linearis_contig95.16979.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16979.1
Unique NamemRNA_C-linearis_contig95.16979.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:277349..278934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1586
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16979.1prot_C-linearis_contig95.16979.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 277779..278000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.7177217-UTR-C-linearis_contig95:277348..2777781622930813.7177217-UTR-C-linearis_contig95:277348..277778Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 277349..277778 +
1690881263.3405912-UTR-C-linearis_contig95:277348..2777781690881263.3405912-UTR-C-linearis_contig95:277348..277778Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 277349..277778 +
1622930813.7569857-UTR-C-linearis_contig95:278000..2789341622930813.7569857-UTR-C-linearis_contig95:278000..278934Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 278001..278934 +
1690881263.360564-UTR-C-linearis_contig95:278000..2789341690881263.360564-UTR-C-linearis_contig95:278000..278934Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 278001..278934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.7348804-CDS-C-linearis_contig95:277778..2780001622930813.7348804-CDS-C-linearis_contig95:277778..278000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 277779..278000 +
1690881263.3518398-CDS-C-linearis_contig95:277778..2780001690881263.3518398-CDS-C-linearis_contig95:277778..278000Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 277779..278000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16979.1

>prot_C-linearis_contig95.16979.1 ID=prot_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
MSFSPVLRALAVSPFPTFFVSFFLVFSSRCFCRALLREGLAMGLFRGMGS
TTLREGLQQTVYFPTVSVLESQA*
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mRNA from alignment at C-linearis_contig95:277349..278934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16979.1 ID=mRNA_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1586bp|location=Sequence derived from alignment at C-linearis_contig95:277349..278934+ (Chordaria linearis ClinC8C monoicous)
CGTGAGGTACCTAATAGATGGCATTCCATGGCGGGGACCCGGGATGATGC
TCGACCGCATGGTGTCTTTTTAGTCAGATTTTGTTTTCGGCCTCGGTTTC
TCGGTCAGTTTTGGCTGGTAAACTGGGCATGGACGCCTTCAGTAGGCAGA
GGATATGATGGCAGAACCCACGCTGTGCTGTGTTTTTCATGCCCCCACCA
CGCCGCTCCGAATTGACCTTACGTGTCTACTGATTGATCCATATGTGTGT
GCTGCGAAGTATATATTTTTCATTTAGGCGAAGACGATGAGAGGCGCCTG
TGCGGTAGACCTCGTGAGAAAGTGAGTGAGACTGTTCCCAAGCACAAGAG
TGTTAGTTGACCGCACCCAGGTGGGTTGGCGATTGCGTTAGTTGCTCGGT
GTTTCAAGGTCGTGATCACAGCAGTACGTAATGTCTTTCTCCCCAGTCTT
GCGGGCCCTTGCCGTGTCTCCGTTCCCGACTTTCTTTGTGTCCTTTTTTT
TGGTTTTTTCTTCCCGTTGTTTTTGTCGGGCTTTGCTCAGGGAGGGGCTA
GCGATGGGTTTGTTCCGGGGCATGGGATCGACCACGCTGAGAGAAGGGCT
CCAGCAGACCGTTTATTTCCCGACGGTGAGTGTGCTTGAGAGTCAGGCCT
GAAACTGCGGCAGGCATTTAACGGGTTTTTCGTTCTACTCGACACGCTGT
CCTGTTTTCGACTTATTTTCGGTTATTTTTGCTTCCGTCCAGGTTTTGTT
GAATTGATGTGCGAGGGACATTGGTGTCTTGGTACGAATCGTTTGATCGT
TTGATCGTTTGATCGTTTGGTCACGTCCTTGACTTGCGGCACGCTTTTGG
AACAATACCTCGGCCTACGACGGCGAGCTATCAATAGCGCGGTAGCACAG
AGTCGCATCGACAATCAGCGGCAGCGGCAGCGGCAGCGACAGTAGCATCA
GCAGCAATGCACAGTTGTCGCCAAGAGTGATTTCGGGGAGAGCGAAGATT
GCGGTAGGCGCGCTTCTATTATATTCTGGCGCGTGTCTGTGATTTTGCGT
GTTTTCTGCTTGGGGAAGCAGCAGCGACCGCGCAAAGTTCTCACACGGAG
TTACTACCCCCGCGTTGACACACGATCCTTTGTCGTAATTACTCCGAAAA
CACAGACGAAAGAAAAAGAAAGGATCCGAACGTCCGTATCCGCGAATTAC
AGCTGGGCGGTGGAAATACTCTTACGGTGCCCCTTTTGGGACAGCGACGT
AGCGGGGTGGATATGTATGTACTGGGGTTGTCGAACGTGTGTCGTGATGG
CCTGTGACTGCCATGGGGAGAATGGGTCTCCACCCTTTGGTTGCATATAC
CTGGCTGGTGCGCCGGGGAACCCATGCTAATGATTCGTGATCGTAGTAGG
GAGTAGGGCGAGAGTGGCTGCGATGGAGCTAAAAGCCAGACGACGAGCCG
AGAGTCCGTGGCAAGCGTAAGGGCGCGCAGAGGCAGCGCCACTTGGCGAG
CCGATGAACCTGCAATGGAAATGCCGGTCTTACGGTGCCCTGATTTCGGC
GAACTGTGAGTAGGGGGTTGTGACGTATGTGGTGAG
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Coding sequence (CDS) from alignment at C-linearis_contig95:277349..278934+

>mRNA_C-linearis_contig95.16979.1 ID=mRNA_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig95:277349..278934+ (Chordaria linearis ClinC8C monoicous)
ATGTCTTTCTCCCCAGTCTTGCGGGCCCTTGCCGTGTCTCCGTTCCCGAC
TTTCTTTGTGTCCTTTTTTTTGGTTTTTTCTTCCCGTTGTTTTTGTCGGG
CTTTGCTCAGGGAGGGGCTAGCGATGGGTTTGTTCCGGGGCATGGGATCG
ACCACGCTGAGAGAAGGGCTCCAGCAGACCGTTTATTTCCCGACGGTGAG
TGTGCTTGAGAGTCAGGCCTGAATGTCTTTCTCCCCAGTCTTGCGGGCCC
TTGCCGTGTCTCCGTTCCCGACTTTCTTTGTGTCCTTTTTTTTGGTTTTT
TCTTCCCGTTGTTTTTGTCGGGCTTTGCTCAGGGAGGGGCTAGCGATGGG
TTTGTTCCGGGGCATGGGATCGACCACGCTGAGAGAAGGGCTCCAGCAGA
CCGTTTATTTCCCGACGGTGAGTGTGCTTGAGAGTCAGGCCTGA
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