prot_C-linearis_contig95.16961.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig95.16961.1
Unique Name	prot_C-linearis_contig95.16961.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	141

Homology

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BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5J769_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J769_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.220e-27
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L+RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:   23 ALSGKVVRLSRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 102

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.240e-27
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGK+ +L RSLYGLKQAS TWH HLV G+K LGFEQ  AD  V+RLIE GVV+MVVV+ VDDIFSIG ++RC+QFGRD
Sbjct:  739 ALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRD 818

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BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.260e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  188 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 267

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.540e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  201 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 280

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.260e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  425 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 504

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.530e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  706 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 785

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.730e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct: 1382 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 1461

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JEP3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP3_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.140e-25
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG  +RCDQFG D
Sbjct:  644 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLNSRCDQFGVD 723

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.520e-25
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFG 126
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG
Sbjct:  438 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFG 515

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.940e-25
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0

Query:   49 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 128
            +LSGKV +L R LYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  915 ALSGKVVRLRRGLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 994

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J769_9PHAE	1.220e-27	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JCD8_9PHAE	5.240e-27	71.25	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K5L3_9PHAE	6.260e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JWG1_9PHAE	6.540e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KGK7_9PHAE	8.260e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JMP2_9PHAE	8.530e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KBJ6_9PHAE	8.730e-26	71.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEP3_9PHAE	1.140e-25	71.25	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K0K7_9PHAE	1.520e-25	71.79	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JV09_9PHAE	2.940e-25	70.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 38..119 e-value: 1.3E-9 score: 38.0
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..41
None	No IPR available	TMHMM	TMhelix		coord: 24..46

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig95	contig	C-linearis_contig95:54122..54544 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.16961.1	mRNA_C-linearis_contig95.16961.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig95 54122..54544 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig95.16961.1 ID=prot_C-linearis_contig95.16961.1|Name=mRNA_C-linearis_contig95.16961.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
LLPSHCPASLTVCFSFLRLFYPAFVWLRVAILLILFLFCPLPTSSALHSL
SGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENG
VVSMVVVIDVDDIFSIGAEARCDQFGRDRFECLRADQERW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2