mRNA_C-linearis_contig95.16961.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig95.16961.1
Unique Name	mRNA_C-linearis_contig95.16961.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5J769_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J769_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.220e-27
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L+RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:   23 ALSGKVVRLSRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 102

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 5.240e-27
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGK+ +L RSLYGLKQAS TWH HLV G+K LGFEQ  AD  V+RLIE GVV+MVVV+ VDDIFSIG ++RC+QFGRD
Sbjct:  739 ALSGKIVRLRRSLYGLKQASRTWHKHLVRGMKCLGFEQCAADACVMRLIEEGVVAMVVVVHVDDIFSIGKKSRCEQFGRD 818

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.260e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  188 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 267

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.540e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  201 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 280

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.260e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  425 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 504

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.530e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  706 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 785

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 8.730e-26
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct: 1382 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 1461

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JEP3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP3_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.140e-25
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG  +RCDQFG D
Sbjct:  644 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLNSRCDQFGVD 723

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.520e-25
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFG 378
            +LSGKV +L RSLYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG
Sbjct:  438 ALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFG 515

[Close]

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.940e-25
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1

Query:  145 SLSGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENGVVSMVVVIDVDDIFSIGAEARCDQFGRD 384
            +LSGKV +L R LYGLKQAS TWH HL+ G+K+LGFE   AD  V+RLIE+GVV+MVVVI VDDIFSIG ++RCDQFG D
Sbjct:  915 ALSGKVVRLRRGLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVD 994

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot

BLAST of mRNA_C-linearis_contig95.16961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J769_9PHAE	1.220e-27	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JCD8_9PHAE	5.240e-27	71.25	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K5L3_9PHAE	6.260e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JWG1_9PHAE	6.540e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KGK7_9PHAE	8.260e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JMP2_9PHAE	8.530e-26	71.25	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KBJ6_9PHAE	8.730e-26	71.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEP3_9PHAE	1.140e-25	71.25	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K0K7_9PHAE	1.520e-25	71.79	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JV09_9PHAE	2.940e-25	70.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig95	contig	C-linearis_contig95:54122..54544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	425
Cds size	423
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930809.3111649-CDS-C-linearis_contig95:54121..54544	1622930809.3111649-CDS-C-linearis_contig95:54121..54544	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 54122..54544 +
1690881261.1375997-CDS-C-linearis_contig95:54121..54544	1690881261.1375997-CDS-C-linearis_contig95:54121..54544	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 54122..54544 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.16961.1	prot_C-linearis_contig95.16961.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig95 54122..54544 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig95:54122..54544+
coding sequence from alignment at C-linearis_contig95:54122..54544+

protein sequence of mRNA_C-linearis_contig95.16961.1

>prot_C-linearis_contig95.16961.1 ID=prot_C-linearis_contig95.16961.1|Name=mRNA_C-linearis_contig95.16961.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
LLPSHCPASLTVCFSFLRLFYPAFVWLRVAILLILFLFCPLPTSSALHSL
SGKVAKLTRSLYGLKQASGTWHDHLVGGVKALGFEQRGADPGVVRLIENG
VVSMVVVIDVDDIFSIGAEARCDQFGRDRFECLRADQERW*

mRNA from alignment at C-linearis_contig95:54122..54544+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig95.16961.1 ID=mRNA_C-linearis_contig95.16961.1|Name=mRNA_C-linearis_contig95.16961.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at C-linearis_contig95:54122..54544+ (Chordaria linearis ClinC8C monoicous)
CTTTTACCCTCGCACTGCCCGGCTTCACTGACAGTCTGTTTTTCTTTCCT
CCGCCTATTTTACCCCGCCTTCGTGTGGCTTCGTGTGGCTATATTGTTGA
TTTTGTTCTTGTTTTGTCCCCTCCCCACCTCCTCCGCACTGCATTCTTTG
TCTGGCAAGGTTGCAAAGCTTACCCGTAGCCTATACGGTTTGAAGCAAGC
GTCAGGCACTTGGCACGATCATTTGGTCGGGGGGGTGAAAGCTTTGGGGT
TCGAGCAGCGCGGTGCGGATCCTGGTGTGGTACGTCTGATTGAGAATGGT
GTTGTCTCAATGGTGGTTGTCATTGATGTGGACGATATTTTCTCCATCGG
TGCCGAGGCTAGGTGTGACCAGTTTGGTAGAGATAGATTTGAATGCCTAC
GTGCCGATCAAGAACGTTGGTGA

Coding sequence (CDS) from alignment at C-linearis_contig95:54122..54544+

>mRNA_C-linearis_contig95.16961.1 ID=mRNA_C-linearis_contig95.16961.1|Name=mRNA_C-linearis_contig95.16961.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig95:54122..54544+ (Chordaria linearis ClinC8C monoicous)
CTTTTACCCTCGCACTGCCCGGCTTCACTGACAGTCTGTTTTTCTTTCCT
CCGCCTATTTTACCCCGCCTTCGTGTGGCTTCGTGTGGCTATATTGTTGA
TTTTGTTCTTGTTTTGTCCCCTCCCCACCTCCTCCGCACTGCATTCTTTG
TCTGGCAAGGTTGCAAAGCTTACCCGTAGCCTATACGGTTTGAAGCAAGC
GTCAGGCACTTGGCACGATCATTTGGTCGGGGGGGTGAAAGCTTTGGGGT
TCGAGCAGCGCGGTGCGGATCCTGGTGTGGTACGTCTGATTGAGAATGGT
GTTGTCTCAATGGTGGTTGTCATTGATGTGGACGATATTTTCTCCATCGG
TGCCGAGGCTAGGTGTGACCAGTTTGGTAGAGATAGATTTGAATGCCTAC
GTGCCGATCAAGAACGTTGGTGACTTTTACCCTCGCACTGCCCGGCTTCA
CTGACAGTCTGTTTTTCTTTCCTCCGCCTATTTTACCCCGCCTTCGTGTG
GCTTCGTGTGGCTATATTGTTGATTTTGTTCTTGTTTTGTCCCCTCCCCA
CCTCCTCCGCACTGCATTCTTTGTCTGGCAAGGTTGCAAAGCTTACCCGT
AGCCTATACGGTTTGAAGCAAGCGTCAGGCACTTGGCACGATCATTTGGT
CGGGGGGGTGAAAGCTTTGGGGTTCGAGCAGCGCGGTGCGGATCCTGGTG
TGGTACGTCTGATTGAGAATGGTGTTGTCTCAATGGTGGTTGTCATTGAT
GTGGACGATATTTTCTCCATCGGTGCCGAGGCTAGGTGTGACCAGTTTGG
TAGAGATAGATTTGAATGCCTACGTGCCGATCAAGAACGTTGGTGA