mRNA_C-linearis_contig95.16990.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16990.1
Unique NamemRNA_C-linearis_contig95.16990.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:373149..373742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size594
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.241952-UTR-C-linearis_contig95:373148..3734061622930809.241952-UTR-C-linearis_contig95:373148..373406Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 373149..373406 +
1690881261.1160307-UTR-C-linearis_contig95:373148..3734061690881261.1160307-UTR-C-linearis_contig95:373148..373406Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 373149..373406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.259579-CDS-C-linearis_contig95:373406..3737421622930809.259579-CDS-C-linearis_contig95:373406..373742Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 373407..373742 +
1690881261.1279216-CDS-C-linearis_contig95:373406..3737421690881261.1279216-CDS-C-linearis_contig95:373406..373742Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 373407..373742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16990.1prot_C-linearis_contig95.16990.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 373407..373742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16990.1

>prot_C-linearis_contig95.16990.1 ID=prot_C-linearis_contig95.16990.1|Name=mRNA_C-linearis_contig95.16990.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
MQPTVSRVCSLSLSLSLSRCLSTVKITPTRFRPTDYQIIITFGRKYNAFG
LKVHPTKPKPGVLSRKRQDKRTRRVAHLNGLRGGPRETLCRRCHPHSAPP
RRHRATSWPSCW
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mRNA from alignment at C-linearis_contig95:373149..373742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16990.1 ID=mRNA_C-linearis_contig95.16990.1|Name=mRNA_C-linearis_contig95.16990.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at C-linearis_contig95:373149..373742+ (Chordaria linearis ClinC8C monoicous)
GCTCGCTGGTCTGTCTGAATCAAACCCATCGCTAAGGGCGGTACGTACAT
AGACAAATATATGCGTGTGTGCGCGCGCGTTGTGGCGCAAGAACACTACC
TATATCACAATGAACCTCCCTCCCAACCGCCACCACGTACTTGCCTTCAA
CACCGAGCAGCAACAGCTTTTGCCACTCGCCGGCTTGTTGTCGACGCACA
CGACACACCCCAACCGCAACGGCAAGAACACTAGCGAACGCGCAAGACTA
TAATAGCTATGCAGCCGACAGTTTCCAGGGTTTGTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCGCTGTCTGTCTACCGTCAAAATCACGCCAACACGCTT
CCGCCCGACGGACTATCAAATCATCATCACCTTCGGCCGGAAATACAATG
CCTTCGGACTGAAGGTCCACCCAACGAAGCCCAAACCTGGCGTTCTTTCG
CGAAAAAGGCAAGACAAGCGGACCCGTCGCGTGGCTCATCTCAACGGGCT
CCGAGGTGGCCCAAGAGAGACGCTATGTCGCCGTTGCCACCCCCATTCCG
CCCCGCCCCGCCGCCACCGGGCGACCTCTTGGCCTTCTTGCTGG
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Coding sequence (CDS) from alignment at C-linearis_contig95:373149..373742+

>mRNA_C-linearis_contig95.16990.1 ID=mRNA_C-linearis_contig95.16990.1|Name=mRNA_C-linearis_contig95.16990.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig95:373149..373742+ (Chordaria linearis ClinC8C monoicous)
ATGCAGCCGACAGTTTCCAGGGTTTGTTCTCTCTCTCTCTCTCTCTCTCT
CTCTCGCTGTCTGTCTACCGTCAAAATCACGCCAACACGCTTCCGCCCGA
CGGACTATCAAATCATCATCACCTTCGGCCGGAAATACAATGCCTTCGGA
CTGAAGGTCCACCCAACGAAGCCCAAACCTGGCGTTCTTTCGCGAAAAAG
GCAAGACAAGCGGACCCGTCGCGTGGCTCATCTCAACGGGCTCCGAGGTG
GCCCAAGAGAGACGCTATGTCGCCGTTGCCACCCCCATTCCGCCCCGCCC
CGCCGCCACCGGGCGACCTCTTGGCCTTCTTGCTGGATGCAGCCGACAGT
TTCCAGGGTTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTGTCTGT
CTACCGTCAAAATCACGCCAACACGCTTCCGCCCGACGGACTATCAAATC
ATCATCACCTTCGGCCGGAAATACAATGCCTTCGGACTGAAGGTCCACCC
AACGAAGCCCAAACCTGGCGTTCTTTCGCGAAAAAGGCAAGACAAGCGGA
CCCGTCGCGTGGCTCATCTCAACGGGCTCCGAGGTGGCCCAAGAGAGACG
CTATGTCGCCGTTGCCACCCCCATTCCGCCCCGCCCCGCCGCCACCGGGC
GACCTCTTGGCCTTCTTGCTGG
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