mRNA_C-linearis_contig95.17007.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.17007.1
Unique NamemRNA_C-linearis_contig95.17007.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:556187..557447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17007.1prot_C-linearis_contig95.17007.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 556187..557447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.0655873-CDS-C-linearis_contig95:556186..5562531622930809.0655873-CDS-C-linearis_contig95:556186..556253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 556187..556253 -
1690881261.0549839-CDS-C-linearis_contig95:556186..5562531690881261.0549839-CDS-C-linearis_contig95:556186..556253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 556187..556253 -
1622930809.0868862-CDS-C-linearis_contig95:556842..5571331622930809.0868862-CDS-C-linearis_contig95:556842..557133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 556843..557133 -
1690881261.0646777-CDS-C-linearis_contig95:556842..5571331690881261.0646777-CDS-C-linearis_contig95:556842..557133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 556843..557133 -
1622930809.1038768-CDS-C-linearis_contig95:557388..5574471622930809.1038768-CDS-C-linearis_contig95:557388..557447Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 557389..557447 -
1690881261.0755513-CDS-C-linearis_contig95:557388..5574471690881261.0755513-CDS-C-linearis_contig95:557388..557447Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 557389..557447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.17007.1

>prot_C-linearis_contig95.17007.1 ID=prot_C-linearis_contig95.17007.1|Name=mRNA_C-linearis_contig95.17007.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=139bp
STNRTRSARPREHHKQQQIRSEIAGNFPRSLQPLRRTRTLATCRLLELWR
VPCQGSNIAQAPKVTPTSTERSAHCQPAHTLSYACRTALLHPGPPFLCNT
PHTHTRTHPRRRRERDRYRLSTRWTSLALLSTTLTPTP*
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mRNA from alignment at C-linearis_contig95:556187..557447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17007.1 ID=mRNA_C-linearis_contig95.17007.1|Name=mRNA_C-linearis_contig95.17007.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1261bp|location=Sequence derived from alignment at C-linearis_contig95:556187..557447- (Chordaria linearis ClinC8C monoicous)
AGCACTAACCGGACTCGGTCAGCGCGGCCTCGTGAGCATCACAAGCAGCA
GCAAATCAGGTCGGAATCCCTCTCTCTCTCTCTCGGTGACCCGCACCGTG
CGGATGCGTACAAGAGTATCTCACAACCATGAGGCCTGGATATACACTGG
TGGACGTTTGCTCGGATTGGGGGGGGATTGACCAAGGTGTCAGACCGGCG
TGCCGTTGTGCAGACCTTGGCAAGGTCAAAAAGTCCCCAAAGTGGCTCAA
CGTGCTGACCACCTGACGTTGGCAACGTCAACCCTTCCTTGTACCTTGCC
AACCCTCCGCCAAGGTCAGAAATTGCTGGAAATTTCCCAAGGTCGCTCCA
ACCTCTACGTAGAACGCGCACGTTGGCAACGTGCCGCCTCCTCGAGCTTT
GGAGGGTACCTTGCCAAGGGTCAAACATCGCCCAAGCGCCCAAGGTCACT
CCAACGTCCACGGAACGAAGCGCACATTGCCAACCCGCACACACCTTGTC
ATACGCGTGTAGAACGGCATTGCTTCATCCCGGGCCCCCCTTTCTTTGCA
ACACACCACACACACACACACGCACACACCCGCGGCGACGACGAGAGAGA
GACAGGTATGTATGCACAAGCGCGCGCGTATAAAAAGCTGTGGTGTGTGG
TGTGCCTATGCTGTGACGTCTCGATGTATTTTGCGCCTCGCCACGTGAGA
GTAGTTATTCAGAGACGAGTGAACCACGAGCGAGAGAACGGCACACCGGT
GCGCACAGGCCTTATTGCTGTGAGATGAAACCTTTACCCACAAAGGTCGA
GAGTTGTTAGCTCTTTGAGATGTGCACACGTGCACCCATACGAGACCATA
GTCTATAGACTATGATACCGCTAGACTATGTACTGCTAAAAAGAACCCCA
ACCGAACGGGTGAGCTATAAGTAGGAGTGAGTAAATTCTACTACTAGACT
ATGTACTGTGATCCAGACAGGTGCAGGCACTACAGCAGTGTAGCAGAGAG
AGGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGACCAC
CCTGTAAGGTCCCGCGCAGGGGGGGCGAACGGCCACGGACCATTGAAGCG
TAGACTAGACTAATGTTCATTGCCGACATCGGCCTATCTACATAGTATGC
AGATTCATTCACCCGTACCTGTGTCGCCCACGATTCCATATCAGGTATAG
GCTGTCTACGAGATGGACATCGCTCGCCCTGCTGTCTACGACCCTGACAC
CCACCCCCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig95:556187..557447-

>mRNA_C-linearis_contig95.17007.1 ID=mRNA_C-linearis_contig95.17007.1|Name=mRNA_C-linearis_contig95.17007.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at C-linearis_contig95:556187..557447- (Chordaria linearis ClinC8C monoicous)
AGCACTAACCGGACTCGGTCAGCGCGGCCTCGTGAGCATCACAAGCAGCA
GCAAATCAGAGCACTAACCGGACTCGGTCAGCGCGGCCTCGTGAGCATCA
CAAGCAGCAGCAAATCAGGTCAGAAATTGCTGGAAATTTCCCAAGGTCGC
TCCAACCTCTACGTAGAACGCGCACGTTGGCAACGTGCCGCCTCCTCGAG
CTTTGGAGGGTACCTTGCCAAGGGTCAAACATCGCCCAAGCGCCCAAGGT
CACTCCAACGTCCACGGAACGAAGCGCACATTGCCAACCCGCACACACCT
TGTCATACGCGTGTAGAACGGCATTGCTTCATCCCGGGCCCCCCTTTCTT
TGCAACACACCACACACACACACACGCACACACCCGCGGCGACGACGAGA
GAGAGACAGGTCAGAAATTGCTGGAAATTTCCCAAGGTCGCTCCAACCTC
TACGTAGAACGCGCACGTTGGCAACGTGCCGCCTCCTCGAGCTTTGGAGG
GTACCTTGCCAAGGGTCAAACATCGCCCAAGCGCCCAAGGTCACTCCAAC
GTCCACGGAACGAAGCGCACATTGCCAACCCGCACACACCTTGTCATACG
CGTGTAGAACGGCATTGCTTCATCCCGGGCCCCCCTTTCTTTGCAACACA
CCACACACACACACACGCACACACCCGCGGCGACGACGAGAGAGAGACAG
GTATAGGCTGTCTACGAGATGGACATCGCTCGCCCTGCTGTCTACGACCC
TGACACCCACCCCCTGAGTATAGGCTGTCTACGAGATGGACATCGCTCGC
CCTGCTGTCTACGACCCTGACACCCACCCCCTGA
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