mRNA_C-linearis_contig95.17002.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.17002.1
Unique NamemRNA_C-linearis_contig95.17002.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:503877..504741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.9908416-CDS-C-linearis_contig95:503878..5040201622930808.9908416-CDS-C-linearis_contig95:503878..504020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503879..504020 -
1690881261.0306127-CDS-C-linearis_contig95:503878..5040201690881261.0306127-CDS-C-linearis_contig95:503878..504020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503879..504020 -
1622930809.008741-CDS-C-linearis_contig95:504691..5047411622930809.008741-CDS-C-linearis_contig95:504691..504741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 504692..504741 -
1690881261.0423453-CDS-C-linearis_contig95:504691..5047411690881261.0423453-CDS-C-linearis_contig95:504691..504741Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 504692..504741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17002.1prot_C-linearis_contig95.17002.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 503879..504741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.17002.1

>prot_C-linearis_contig95.17002.1 ID=prot_C-linearis_contig95.17002.1|Name=mRNA_C-linearis_contig95.17002.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp
AEVVRQCTAGLDKMSSLISNEAARRAQSLVRRLAAEKQRKAQKQNGINSE
KVPTASHSHAKDER
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mRNA from alignment at C-linearis_contig95:503877..504741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17002.1 ID=mRNA_C-linearis_contig95.17002.1|Name=mRNA_C-linearis_contig95.17002.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=865bp|location=Sequence derived from alignment at C-linearis_contig95:503877..504741- (Chordaria linearis ClinC8C monoicous)
GCGGAAGTTGTCCGGCAGTGTACAGCAGGGCTGGACAAGATGTCCTCACT
GTGAGTTTTTTGCAAGTTATACTGTACGTGCAGGGCGTGCGTACGGGGTA
CCGGTACGACGGGACAATCTACAGCAGTAGGGGACGAAACGCCTTTCGTT
GTCAGAATCTTAGCCGCCGTGAAAAACAATTCGAATGCTGTGAAGTATAT
TATTGCATGCTCCGCGACACAAAAAGTGTAAAATACGTTTGCCAGGCACG
GAAGCTGAAAGGAGGGTTGGAGTATTTTTAACGCGTGCGGTGGTATCCGG
TGGTCGTCGTTCTGTAACGCTTGTGGGTATTCCTACTGTCGTGCAAAAGC
GCGTCCGCGGTTAAACTAAATTTTGTACTTCGTAGTGGCAAACTCGTCTG
ACTCCCCATTCCCCACCCCTCACTACATGCATCCGGGCTACGTTCGCTTA
CTGAAAGGGTCGGTATGCATTTTTTCCGCAGGCAAGCGTTCAAGGTAGAT
GGTAAATGTCCGATACTTCGCTGGCAAAGTTCCCCGACAGTGCCCTAGGA
TGGGGGGCTAACGGAAACGTGGATCCCCTCGTCGTCTTTTTGGCAGGACT
GACCGCCATGTGGATGATATCTGAGTGTTTGAAGAGACTGACCGGTGTAA
CGGCAGATTTAGATACCAACAGCATGCTGCTTCCGCCCCGCCAACTCGCG
CGATGTATTTTGGTAATGTAGCATTTCGAACGAAGCTGCTAGGCGGGCAC
AAAGCTTGGTCCGCCGACTTGCGGCAGAAAAGCAGCGAAAGGCGCAGAAA
CAAAACGGTATCAACAGTGAAAAAGTGCCTACAGCCAGCCATAGCCATGC
GAAGGACGAACGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig95:503877..504741-

>mRNA_C-linearis_contig95.17002.1 ID=mRNA_C-linearis_contig95.17002.1|Name=mRNA_C-linearis_contig95.17002.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig95:503877..504741- (Chordaria linearis ClinC8C monoicous)
GCGGAAGTTGTCCGGCAGTGTACAGCAGGGCTGGACAAGATGTCCTCACT
GCGGAAGTTGTCCGGCAGTGTACAGCAGGGCTGGACAAGATGTCCTCACT
CATTTCGAACGAAGCTGCTAGGCGGGCACAAAGCTTGGTCCGCCGACTTG
CGGCAGAAAAGCAGCGAAAGGCGCAGAAACAAAACGGTATCAACAGTGAA
AAAGTGCCTACAGCCAGCCATAGCCATGCGAAGGACGAACGGCATTTCGA
ACGAAGCTGCTAGGCGGGCACAAAGCTTGGTCCGCCGACTTGCGGCAGAA
AAGCAGCGAAAGGCGCAGAAACAAAACGGTATCAACAGTGAAAAAGTGCC
TACAGCCAGCCATAGCCATGCGAAGGACGAACGG
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