mRNA_C-linearis_contig95.17001.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.17001.1
Unique NamemRNA_C-linearis_contig95.17001.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.17001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:501009..503812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1292
Cds size1290
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.17001.1prot_C-linearis_contig95.17001.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 501011..503812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.8894243-CDS-C-linearis_contig95:501010..5013791622930808.8894243-CDS-C-linearis_contig95:501010..501379Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 501011..501379 -
1690881260.9675083-CDS-C-linearis_contig95:501010..5013791690881260.9675083-CDS-C-linearis_contig95:501010..501379Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 501011..501379 -
1622930808.903203-CDS-C-linearis_contig95:501520..5021061622930808.903203-CDS-C-linearis_contig95:501520..502106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 501521..502106 -
1690881260.9781384-CDS-C-linearis_contig95:501520..5021061690881260.9781384-CDS-C-linearis_contig95:501520..502106Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 501521..502106 -
1622930808.9169762-CDS-C-linearis_contig95:502289..5024151622930808.9169762-CDS-C-linearis_contig95:502289..502415Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 502290..502415 -
1690881260.9879298-CDS-C-linearis_contig95:502289..5024151690881260.9879298-CDS-C-linearis_contig95:502289..502415Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 502290..502415 -
1622930808.9306955-CDS-C-linearis_contig95:503116..5032811622930808.9306955-CDS-C-linearis_contig95:503116..503281Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503117..503281 -
1690881260.9977949-CDS-C-linearis_contig95:503116..5032811690881260.9977949-CDS-C-linearis_contig95:503116..503281Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503117..503281 -
1622930808.944906-CDS-C-linearis_contig95:503768..5038121622930808.944906-CDS-C-linearis_contig95:503768..503812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503769..503812 -
1690881261.0152571-CDS-C-linearis_contig95:503768..5038121690881261.0152571-CDS-C-linearis_contig95:503768..503812Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 503769..503812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.17001.1

>prot_C-linearis_contig95.17001.1 ID=prot_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=430bp
PWRAGASSRAWAESRRVTDESRRPGSSLQGGEVGGACNLVKEYARAAVER
IVRRACLNLANRPWRLAGVRLSIDRSNHAGRRQRMLRARTSKDGPMAALV
ELQAAHGNLANNGTELCGWARRRGCKPRHRRLMRPRTPSDDSRRLGSTRP
SPPPFPHRRHPSSAGWGRDEVGRRHEGDKNYDDSCCPQYILYGTYEACQE
SPWSEGRQGWISQAEDAKDVDVSNGVSAEGVPPSFRRKLGVQLPPQPCRT
IGYRPRGTSCLNRATGKVTRQGGRALNLANGRSTNCQLPQRPRWDARFWV
RARDFPAATTSTWETRNPSSQRVVSEQGVGPRVHVPAVGENDMPTDNAST
TTTTSGGGYSASTFVDETVSSSSLATFSSSLGEETWSEVSVTADDSSAAR
GSPLDQLQEAAGEEAAPATRGQAGDGDAWH
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mRNA from alignment at C-linearis_contig95:501009..503812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.17001.1 ID=mRNA_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2804bp|location=Sequence derived from alignment at C-linearis_contig95:501009..503812- (Chordaria linearis ClinC8C monoicous)
CCCTGGCGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGGTGCGC
TGGCCATTAAGCGTCGTATCTATCTTCCAAACATACGTTGGGGCATATCC
GGACAGAGGTGCGCCGTACACAGCGACACCCATCTCTCGCTACGTAGTAA
AAAAAAAGTCCGGTGGACCCATACCGGAGTCATGGGGGTCAGAATTCCCC
GCTCTTGGGGGGCGGAATGTTCGCCTGTCCGGAAGGCTGCCACCGAGGCT
CGAGGTTCGGGTTCGGCGAAAACGCCCCCCTCTGTGTTGGCCCCGGAGGA
ACCGCTCGGAGGGCGCGGTGTTTTCAAGACTCTTTGTCGCGGGCTCTCCC
AAACATCGAGGTTTGTTTTGCTGTACTCGTGGCAACCCCCCGCATTTCGC
CGAGTTGACCCTGGGGGGGTATTCATCGACCCCAATTTGAGGAGAGGCAC
TCGTGGTCGCGCGAGAACGTACGGTGGTTGCACTACATAAAGTATCCCGT
AACTTTCTCGTGATTCATGGACCACCTGTAGGCGAGTGACAGACGAGTCG
CGGCGGCCTGGAAGCAGCTTACAAGGCGGAGAGGTCGGTGGGGCTTGCAA
CCTCGTCAAGGAATATGCCAGGGCCGCGGTAGAGCGGATTGTTCGGCGAG
CTTGTCTGAATCTTGCCAATCGGCCTTGGAGACTTGCCGGAGTGAGGTGG
GGCTCCATTCTTCATTTTTGGTTCTCGATTAAGTTGGGCTGCGGTTGGGG
TAGTCTGGCGATTTGTTTCATTCTGGATGATGACAGCTAAGAAGTACTAA
CATTGCCTGATATGTTTTTTTGTTTTGTTTTTCTCGCCCATTAATGTTTT
TTCGTAGCCTGCCTCCTCCTCTTCATTACAACTAGCTAGGCTACCATCCG
AGGTCACACAGGAGGGGATGTTTCCACCTACCTCCTGCGGTGCATGCCTT
TGATGCTTTTTATCGCGAGCAGGGTTCAGCGGTCCCCACCCTCGTCAACA
ATGAAGTCGAAAGTAGTATTTACTAACAAGCTTGCAGCAAGTTTTCAATG
TACCAGGAACGAAAGTGAGAAAAAAACTAACTTCGTCGGGGCTTGAAGCC
ATGACCTGGCGCTTCTAGTAGACTGCGTGGGTGTCCACTAGACCACCGGG
GCGACCGGCATTATGTCGTCCGGCGTAGAACAATGTTTCACCTAATGAAC
TTATCTGGACACTTCACTCGGCAAAGGAATGCGACCAAAACCCTTTGATC
TATGCGCTCAAGGGCTTCATGAGGAACCGGGTACTCCGCGTTCCTTCCCT
TCAGTTCTGAAACGAGTCGGCCCATGGTTCTGCGAGGCACTGTATGCGAC
GGCTTGACAACGGGCCCTCGTTCTGTTGATGACGTATGCACACCCAGGCT
TTCTATAGACCGCAGCAACCACGCTGGTAGGCGACAACGAATGCTGCGCG
CAAGGACCAGCAAGGATGGTCCTATGGCCGCACTCGTCGAACTGCAAGCG
GCACACGGGAACCTGGCAAACAAGTACGTACGTGATTGGCAACAGCCATA
GACCCGCCACCGCACGTTTCAACCTGACATACAACGCATTGCTTGAATAC
ACCAAAATTCAGGCCCATCCTTAGTAGAGACAACCGAAGACCTTATCGAG
CGCACTGCTGTTCTTGCTCATCGCAACGGCGAACTTGTCGCATTTTCAAC
CCTCAGTGGCACGGAGCTCTGTGGATGGGCACGGCGGCGTGGCTGTAAGC
CGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCTCCGATGACAGCCGA
CGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTCCCGCACCGTCGGCA
TCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGGCAGGAGGCATGAAG
GCGACAAGAATTACGACGACTCCTGCTGCCCACAATACATCCTATACGGC
ACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAGGGTAGACAAGGATG
GATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGTTTCGAACGGTGTCT
CAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGCTTGGTGTCCAACTC
CCCCCGCAACCATGCCGGACGATCGGCTACCGTCCTCGAGGCACATCATG
TCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGGTGGACGCGCTCTCA
ACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTCCACAGCGGCCACGC
TGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTTCCGGCGGTAAGAAT
GCGTGAATGAGGTGCAAGAGCGCATACTATGGTACTTTAATGGTGGGACG
TTTCTCCTTCGCATGCTTCGAGCGCGTGCTCGTGCCTCGCTTCACATCTT
CGAACGTGCCTCGTTGCCACACATACCTTACAGGCAACAACCTCGACTTG
GGAAACAAGGAACCCATCGTCGCAACGCGTGGTTTCTGAGCAAGGCGTTG
GCCCCAGGGTGCATGTGCCTGCCGTGGGAGAGAATGACATGCCCACGGAT
AACGCCTCCACCACCACCACCACCTCAGGCGGAGGGTACAGCGCGAGCAC
CTTTGTTGACGAAACCGTGTCGTCTTCCAGCCTCGCTACGTTCAGCTCAA
GCCTCGGTGAAGAAACCTGGAGTGAGGTCAGCGTCACAGCTGATGATTCG
TCGGCAGCAAGAGGTTCTCCCTTGGACCAGCTCCAAGAAGCGGCAGGGGA
GGAGGCGGCGCCTGCCACGAGGGGGCAGGCAGGTGACGGAGATGCTTGGC
ATGC
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Coding sequence (CDS) from alignment at C-linearis_contig95:501009..503812-

>mRNA_C-linearis_contig95.17001.1 ID=mRNA_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2580bp|location=Sequence derived from alignment at C-linearis_contig95:501009..503812- (Chordaria linearis ClinC8C monoicous)
CCCTGGCGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGCCCTGG
CGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGGCGAGTGACAGA
CGAGTCGCGGCGGCCTGGAAGCAGCTTACAAGGCGGAGAGGTCGGTGGGG
CTTGCAACCTCGTCAAGGAATATGCCAGGGCCGCGGTAGAGCGGATTGTT
CGGCGAGCTTGTCTGAATCTTGCCAATCGGCCTTGGAGACTTGCCGGAGT
GAGGCGAGTGACAGACGAGTCGCGGCGGCCTGGAAGCAGCTTACAAGGCG
GAGAGGTCGGTGGGGCTTGCAACCTCGTCAAGGAATATGCCAGGGCCGCG
GTAGAGCGGATTGTTCGGCGAGCTTGTCTGAATCTTGCCAATCGGCCTTG
GAGACTTGCCGGAGTGAGGCTTTCTATAGACCGCAGCAACCACGCTGGTA
GGCGACAACGAATGCTGCGCGCAAGGACCAGCAAGGATGGTCCTATGGCC
GCACTCGTCGAACTGCAAGCGGCACACGGGAACCTGGCAAACAAGCTTTC
TATAGACCGCAGCAACCACGCTGGTAGGCGACAACGAATGCTGCGCGCAA
GGACCAGCAAGGATGGTCCTATGGCCGCACTCGTCGAACTGCAAGCGGCA
CACGGGAACCTGGCAAACAATGGCACGGAGCTCTGTGGATGGGCACGGCG
GCGTGGCTGTAAGCCGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCT
CCGATGACAGCCGACGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTC
CCGCACCGTCGGCATCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGG
CAGGAGGCATGAAGGCGACAAGAATTACGACGACTCCTGCTGCCCACAAT
ACATCCTATACGGCACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAG
GGTAGACAAGGATGGATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGT
TTCGAACGGTGTCTCAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGC
TTGGTGTCCAACTCCCCCCGCAACCATGCCGGACGATCGGCTACCGTCCT
CGAGGCACATCATGTCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGG
TGGACGCGCTCTCAACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTC
CACAGCGGCCACGCTGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTT
CCGGCGTGGCACGGAGCTCTGTGGATGGGCACGGCGGCGTGGCTGTAAGC
CGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCTCCGATGACAGCCGA
CGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTCCCGCACCGTCGGCA
TCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGGCAGGAGGCATGAAG
GCGACAAGAATTACGACGACTCCTGCTGCCCACAATACATCCTATACGGC
ACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAGGGTAGACAAGGATG
GATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGTTTCGAACGGTGTCT
CAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGCTTGGTGTCCAACTC
CCCCCGCAACCATGCCGGACGATCGGCTACCGTCCTCGAGGCACATCATG
TCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGGTGGACGCGCTCTCA
ACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTCCACAGCGGCCACGC
TGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTTCCGGCGGCAACAAC
CTCGACTTGGGAAACAAGGAACCCATCGTCGCAACGCGTGGTTTCTGAGC
AAGGCGTTGGCCCCAGGGTGCATGTGCCTGCCGTGGGAGAGAATGACATG
CCCACGGATAACGCCTCCACCACCACCACCACCTCAGGCGGAGGGTACAG
CGCGAGCACCTTTGTTGACGAAACCGTGTCGTCTTCCAGCCTCGCTACGT
TCAGCTCAAGCCTCGGTGAAGAAACCTGGAGTGAGGTCAGCGTCACAGCT
GATGATTCGTCGGCAGCAAGAGGTTCTCCCTTGGACCAGCTCCAAGAAGC
GGCAGGGGAGGAGGCGGCGCCTGCCACGAGGGGGCAGGCAGGTGACGGAG
ATGCTTGGCATGCAACAACCTCGACTTGGGAAACAAGGAACCCATCGTCG
CAACGCGTGGTTTCTGAGCAAGGCGTTGGCCCCAGGGTGCATGTGCCTGC
CGTGGGAGAGAATGACATGCCCACGGATAACGCCTCCACCACCACCACCA
CCTCAGGCGGAGGGTACAGCGCGAGCACCTTTGTTGACGAAACCGTGTCG
TCTTCCAGCCTCGCTACGTTCAGCTCAAGCCTCGGTGAAGAAACCTGGAG
TGAGGTCAGCGTCACAGCTGATGATTCGTCGGCAGCAAGAGGTTCTCCCT
TGGACCAGCTCCAAGAAGCGGCAGGGGAGGAGGCGGCGCCTGCCACGAGG
GGGCAGGCAGGTGACGGAGATGCTTGGCAT
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