prot_C-linearis_contig95.16995.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16995.1
Unique Nameprot_C-linearis_contig95.16995.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length233
Homology
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BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.880e-62
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 0 
Query:    3 PRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISAFEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLPLTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFP 144
            PR +Y++E GPP  VSFLL++LG  ALCIAAVYLRASTLH+REI+ISA+E TIS W   RP FARLS+NVTAHFGVAP NTTSPGLDPNPP P  PL L VSE+ DPI+DEEG +GGLPNY PLKL+RG+AP PWRTA RFP
Sbjct:   32 PRARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFP 172
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE2.880e-6273.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..36
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..233
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:433333..436937 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16995.1mRNA_C-linearis_contig95.16995.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 433282..436937 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16995.1 ID=prot_C-linearis_contig95.16995.1|Name=mRNA_C-linearis_contig95.16995.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=233bp
MQPRPQYDDEDGPPVGVSFLLVVLGAVALCIAAVYLRASTLHEREIRISA
FEATISAWNTSRPMFARLSVNVTAHFGVAPPNTTSPGLDPNPPVPAPPLP
LTVSENPDPIYDEEGASGGLPNYEPLKLDRGIAPLPWRTAPRFPPPEEED
SEEEDDEEEAGDAVGSSAEERQEEGEGEGQETPDSVGTGAGADGGGRRRR
QRRRRILEDGRWTGAALPAHNAGAGAAVAAAAA
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