mRNA_C-linearis_contig95.16994.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16994.1
Unique NamemRNA_C-linearis_contig95.16994.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-19
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPANSAAAADGGAPRGYWGRRAPTRSPVSCNED 265
            + VFYPS+QEIWPELY   N++ VEVD+ VEI SDSG EY+Y GPQLKV Y RA PPA++A A     PR   GRR  +R+P+  N D
Sbjct:  459 AGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSG-EYQYVGPQLKVTYLRAAPPADAAEA----TPRPA-GRRTASRAPIPFNSD 540
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.900e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPAN 178
            S VFYP +QEIWPELY+  N++ VEVD+ +EILSD+ GE+R+ GP LKV Y RA PP +
Sbjct:  191 SRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIPPVD 249
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.150e-15
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPANS 181
            S VFYPSL+++WPELY   +V+AVEVD+ VEILSD G E+RY GP LKV Y R  PP ++
Sbjct:  309 SRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTRITPPVSA 368
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.470e-13
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKV 148
            S VFYPSL+E+WPELY   +V+AVEVD+ VE+LSD G E+RY GP LKV
Sbjct:  131 SRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.360e-7
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWP----PANSAAAA 193
            ++V +PS+ EIWPE+Y + N++ +EVD+ VE+ S S G   Y GP LK+ Y R+      P ++AAAA
Sbjct:  572 AAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRS-SDGNILYTGPTLKITYRRSAARTSAPTDAAAAA 638
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.510e-5
Identity = 23/53 (43.40%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:    5 SVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRA 163
            ++ YPS+++IWPE+Y   +V+ VEVD+ V++ S S G++ +  P +KV+Y RA
Sbjct:  523 TITYPSMEDIWPEVYSARSVKVVEVDMTVDVRS-SDGKWVHSWPSVKVMYRRA 574
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BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5JYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 6.450e-5
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:    2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVV 151
            ++V +PS+ EIWPE+Y + N++ +EVD+ VE+ S S G   Y GP LK+V
Sbjct:  709 AAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRS-SEGNILYTGPTLKLV 757
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZ48_ECTSI1.050e-1957.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7N5_ECTSI2.900e-1661.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE6.150e-1561.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N4_ECTSI2.470e-1367.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK7_ECTSI3.360e-744.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0L1_9PHAE2.510e-543.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYP1_9PHAE6.450e-548.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:415099..416391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size441
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16994.1prot_C-linearis_contig95.16994.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 415099..416391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930808.4716403-CDS-C-linearis_contig95:415098..4151741622930808.4716403-CDS-C-linearis_contig95:415098..415174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 415099..415174 +
1690881260.778907-CDS-C-linearis_contig95:415098..4151741690881260.778907-CDS-C-linearis_contig95:415098..415174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 415099..415174 +
1622930808.487446-CDS-C-linearis_contig95:415710..4157791622930808.487446-CDS-C-linearis_contig95:415710..415779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 415711..415779 +
1690881260.7924557-CDS-C-linearis_contig95:415710..4157791690881260.7924557-CDS-C-linearis_contig95:415710..415779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 415711..415779 +
1622930808.5067317-CDS-C-linearis_contig95:416095..4163911622930808.5067317-CDS-C-linearis_contig95:416095..416391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 416096..416391 +
1690881260.8057055-CDS-C-linearis_contig95:416095..4163911690881260.8057055-CDS-C-linearis_contig95:416095..416391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 416096..416391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16994.1

>prot_C-linearis_contig95.16994.1 ID=prot_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=147bp
LQCVLPQLARDLAGAVRHAKRPGGGGGHRGRDFIRQRRRVPVPRSPAEGG
LPSRLAPGQLRGRRRRGGTERVLGKEGTHPLARFVQRGRVPPDLFPRYCG
YPPVNAPSGGGGSRDVRAFVRSLAPPPCPSHTARRRRDRHHHHQRH*
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mRNA from alignment at C-linearis_contig95:415099..416391+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16994.1 ID=mRNA_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1293bp|location=Sequence derived from alignment at C-linearis_contig95:415099..416391+ (Chordaria linearis ClinC8C monoicous)
CTCCAGTGTGTTCTACCCCAGCTTGCAAGAGATCTGGCCGGAGCTGTACG
ACATGCCAAACGTCCAGGCGGTGGAGGTGTGTTCGGCGATGAATCCTATA
GGGGTAGGGGGTCAAGGGTCAAGGGTGATGGGTACCCACTTCTGTCTGAT
TCGGGCGGAAAACACGCGCCCATTCACGCGGTGTCAGCCCACGGCGGTGT
GTGGTTGTTGGCTGTTTGTGCTGTAACTCAAACCGCGCCTCTGAAGACAC
AGGCTACCCTCAGAAGATGATGGGCCTGTTGTGGTAGTATTGACCCACTA
CCGGGGGCGGCTTGTTTCCTTTGTTTGGTGATACTTCGAAGTACTCAGGC
AAGGAGAGAGGTTCACACAAGAACAAGAGTGTGACCCGAGGAAGAAGAGC
ACGAAGACTCTTCGCGTCTCGGTGCCGCAGTTGGGTTGGAAGAGTTGGAT
ATCCGGTGGGTTTCTTGTCAACCCCAACGGGCCGATAAGATACCCCACTT
AAGATCCAATCTTACTGTATTCTGGTATGTGTAGGTCTGGTTCTCGTAGC
TCTGGTTCTCGTATGTATTCATCTGTCTCCACACCTCTGTTTTGTTCTCT
TCTGCCGTGCAGGTGGACATCGAGGTCGAGATTTTATCCGACAGCGGCGG
CGAGTACCGGTACCACGGTCCCCAGCTGAAGGTAAGGCGCGGATGATGCC
GTCGAGCCGTGCCTCGTGGACTCGTAGGAGACGCCGGTGGTGTCATGGCT
AGATAGCTGCACTTGGCCCCCAGCGGGCTGGATGGTTCGTGGGCCAGCTT
TTGGGGAGAGGGGCGGGTGTTGTGTGCGCTTCGTTCTTCGATCTGCTGCG
CGTCAGCGACCTCCCGGAAGGATGACTTCACCCCAGCATACCGCCAACCC
CGCGAGCTGAACCCCCTCCTAGTCAATGCCCCGCGTGGTGATTTTGGAAT
GCTTTCCCTCCTTGTGCCGGATCGTTGTATGTACGTGAATGTTTCAGGTG
GTCTACCATCGCGCTTGGCCCCCGGCCAACTCCGCGGCCGCCGCCGACGG
GGGGGCACCGAGAGGGTACTGGGGAAGGAGGGCACCCACCCGCTCGCCCG
TTTCGTGCAACGAGGACGAGTTCCGCCCGATTTGTTCCCACGTTATTGCG
GATACCCACCGGTAAATGCGCCCTCGGGTGGTGGTGGATCTCGCGATGTA
CGTGCCTTTGTCAGGTCCCTCGCACCTCCGCCATGCCCGTCGCACACGGC
ACGGCGTCGCCGTGACCGTCACCATCATCACCAGCGCCACTAG
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Coding sequence (CDS) from alignment at C-linearis_contig95:415099..416391+

>mRNA_C-linearis_contig95.16994.1 ID=mRNA_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at C-linearis_contig95:415099..416391+ (Chordaria linearis ClinC8C monoicous)
CTCCAGTGTGTTCTACCCCAGCTTGCAAGAGATCTGGCCGGAGCTGTACG
ACATGCCAAACGTCCAGGCGGTGGAGCTCCAGTGTGTTCTACCCCAGCTT
GCAAGAGATCTGGCCGGAGCTGTACGACATGCCAAACGTCCAGGCGGTGG
AGGTGGACATCGAGGTCGAGATTTTATCCGACAGCGGCGGCGAGTACCGG
TACCACGGTCCCCAGCTGAAGGTGGACATCGAGGTCGAGATTTTATCCGA
CAGCGGCGGCGAGTACCGGTACCACGGTCCCCAGCTGAAGGTGGTCTACC
ATCGCGCTTGGCCCCCGGCCAACTCCGCGGCCGCCGCCGACGGGGGGGCA
CCGAGAGGGTACTGGGGAAGGAGGGCACCCACCCGCTCGCCCGTTTCGTG
CAACGAGGACGAGTTCCGCCCGATTTGTTCCCACGTTATTGCGGATACCC
ACCGGTAAATGCGCCCTCGGGTGGTGGTGGATCTCGCGATGTACGTGCCT
TTGTCAGGTCCCTCGCACCTCCGCCATGCCCGTCGCACACGGCACGGCGT
CGCCGTGACCGTCACCATCATCACCAGCGCCACTAGGTGGTCTACCATCG
CGCTTGGCCCCCGGCCAACTCCGCGGCCGCCGCCGACGGGGGGGCACCGA
GAGGGTACTGGGGAAGGAGGGCACCCACCCGCTCGCCCGTTTCGTGCAAC
GAGGACGAGTTCCGCCCGATTTGTTCCCACGTTATTGCGGATACCCACCG
GTAAATGCGCCCTCGGGTGGTGGTGGATCTCGCGATGTACGTGCCTTTGT
CAGGTCCCTCGCACCTCCGCCATGCCCGTCGCACACGGCACGGCGTCGCC
GTGACCGTCACCATCATCACCAGCGCCACTAG
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