mRNA_C-linearis_contig93.16920.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16920.1
Unique NamemRNA_C-linearis_contig93.16920.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 580 bits (1496), Expect = 2.270e-200
Identity = 301/403 (74.69%), Postives = 325/403 (80.65%), Query Frame = 3
Query:  165 GMDALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGVLLARRQRVPQVANPDRALQVPAERERPALFEEAGERTQGRGVLLRHPEGSL*DPQARHGVPEPGAHRQRVFHVLHLAQHAAHLRRHGPAGGEHELD*QCWGGGHVGDGAGGGL 1373
            G DALLPATALAVALVA+DEVQR                         QRQRK VE CAWA++LEDKDLE+S S T+KQFR+DFRVP  FFLRLVALVKSKNWF+TA  DA GR SHPVEHKVLAWLTILGRGNCFASIYQMSWMS  TVQ MFH FCKHFAREMYDEHI+LP+E++G+LDHVMKQYDRLGF+GA+GSMDVTHI W++CPYN  RSYTGKEG PTI YQVTV+HAGRA AVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKG  L       +      A QVPAERER  LFEEAGER +GRG+LLRHPE  L DP+ARHGVP  GAHRQRV HVLHLAQHAAHLRR+G AGG+H +  QC GG HVGD AGGGL
Sbjct:    7 GDDALLPATALAVALVALDEVQRNDLSQEEEDTAPDLTRPRLSRT---QRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAGGGL 406          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 511 bits (1315), Expect = 3.070e-172
Identity = 284/440 (64.55%), Postives = 311/440 (70.68%), Query Frame = 3
Query:   57 MWKWLPSLALLAGSSSGACLTPTFNSSPGSLPMAAAGM-DALLPATAL-AVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXX-QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGVLLARRQRVPQVAN------------------------PDRALQVPAERERPALFEEAGERTQGRGVLLRHPEGSL*DPQARHGVPEPGAHRQRVFHVLHLAQHAAHLRRHG 1295
            MW WLPSLALLAG+ S   LTP + SS GSLPMA  G+ DALLPATAL AV L A+D+VQR                          QR+RKDVE CAWAQ+LEDKDL+DS SIT+KQFR+DFRVPY+FFLRL ALVKSK+WF+T+  DA GR SHPVEHKVLAWLTILGRGNCFASIYQMSWMS KT                           + +LDHVM+QYDRLGF+G++GSMDVTHI WS+CPYN ARSYTGKEG P I YQV V HAGRA+AVTEGFT STNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKG  L       ++ N                        PD   QVPAERER +LFE AGER QGRGVLLRHPEGSL DP+ARHGVP  GAHRQRVF  LHLAQHAAHLRR+G
Sbjct:    1 MWNWLPSLALLAGAGSATRLTPPYISSLGSLPMAETGVGDALLPATALLAVTLAALDKVQRNDLSQKDLLEEEDRAPDLPRPKLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 447 bits (1150), Expect = 1.090e-147
Identity = 240/324 (74.07%), Postives = 243/324 (75.00%), Query Frame = 3
Query:  153 MAAAGMDALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYT----------------------------EKTFDVYNEDGTTTTLKGVLL 1040
            MAAAGMDALLPATALAVALVAV E+                                         LLEDKDLEDSTSITAKQ RVDFRVPYT FLRLVALVKSKNWFSTAV DAVG ASHPVEHKVLAWLTILGRGNCFASIYQMSWMS KTVQGMFHKFC+HFAREMYDE IHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRA+AVTEGFTGSTNDKTIVCWD AVEKI TDK YT                            EKTFDVYNEDGTTTTLKG  L
Sbjct:    1 MAAAGMDALLPATALAVALVAVHEL-----------------------------------------LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYL 283          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 435 bits (1118), Expect = 1.340e-143
Identity = 217/290 (74.83%), Postives = 240/290 (82.76%), Query Frame = 3
Query:  171 DALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGVLL 1040
            DALLPATALA ALVA+DE                             R+RK+VE CAWAQ+LEDKDLEDS SI++KQFR+DFRVP +FFLRLVALVKSK+WF+T+  DA  R SHPVEHKVLAWLTILGRGNCFASIYQ+SWMS KTVQ MFHKFCKHFAREMYDEHI+LP+E++G+LDHVMKQYDRLGF+GA+GSMDVTHI WS+CPYN ARSYTGKEG PT+ YQVTV+HAGRA+AVTEGFT STNDKT VCWDA VEKIRTD QYTEKTFDVYNEDGTTTTLKG  L
Sbjct:    8 DALLPATALAGALVALDE-----------------------------RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYL 268          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 397 bits (1021), Expect = 9.610e-129
Identity = 217/329 (65.96%), Postives = 242/329 (73.56%), Query Frame = 3
Query:   57 MWKWLPSLALLAGSSSGACLTPTFNSSPGSLPMAAAGM-DALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGVLL 1040
            MW+WLPSL LLAG  S   LTP + SS  SLPMA  G+ DALLPATALAV LVA+DEVQR                         QR+RKDVE CAWA++LEDKDLEDS SIT+KQFR+DFRVPY+FFLRL ALVKSK+WF+T+  DA GR SH VEHKVLAWLTILGRGNCFASIYQMSWMS KTVQ MFHKF KHFAREMYDEHI+LP+E++G+LDHVM+Q DRLGF GA+ SM VT                             V+HAGRA+ VTEGFTGSTNDKTI+CWDAAVEKIRTDKQY ++TFDVYNEDGTTTTLKG  L
Sbjct:    1 MWEWLPSLELLAGGGSATRLTPPYISSLDSLPMAETGVGDALLPATALAVVLVALDEVQRNDLSQEEEEDRAPDLPRPKLSRG--QRKRKDVEKCAWAKMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMFHKFRKHFAREMYDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVT-----------------------------VNHAGRAIVVTEGFTGSTNDKTIICWDAAVEKIRTDKQYPKQTFDVYNEDGTTTTLKGCYL 298          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 2.130e-119
Identity = 203/286 (70.98%), Postives = 210/286 (73.43%), Query Frame = 3
Query:  174 ALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKG 1031
            ALLPA ALAVALVAVDEVQR                         QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWF  A  DAVGRASHPVEHKVLAWLTILGR NCFASI+Q+SWMS KTVQGMFHKFC+HFAR+MYDEHIHL  EESGKLDHV++       +G V            CPYNQARSYTGKEGFPTIAYQV                      TIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKG
Sbjct:   54 ALLPARALAVALVAVDEVQRNDLSQQDLLEEDPASDLPFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKVLAWLTILGRNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVR-------SGWVYG----------CPYNQARSYTGKEGFPTIAYQVV---------------------TIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKG 301          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 2.100e-118
Identity = 181/238 (76.05%), Postives = 197/238 (82.77%), Query Frame = 3
Query:  165 GMDALLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRA 878
            G DALLPATALAVALVA+DEVQR                         QRQRKDV+TCAWAQ+LEDKDLEDS S T+KQFR+DFRVPY+FFLRLVALVKSKNWF TA  D  GR SHPVEHKVLAWLTILGRGNCFASIYQMSWMS  TVQ MFHKFCKHFAREMYDEHI+LP+E++G+LDHVMKQYDRLGF+GA+GSMDVTHI WS+CPYN ARSYTGKEG PT+ YQVTV+HAGRA
Sbjct:    7 GDDALLPATALAVALVALDEVQRNDLSQEEEDTAPDLPRPRLSRT---QRQRKDVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRA 241          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 2.920e-118
Identity = 202/288 (70.14%), Postives = 232/288 (80.56%), Query Frame = 3
Query:  177 LLPATALAVALVAVDEVQRXXXXXXXXXXXXXXXXXXXXXXXXXQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGRASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFAREMYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGVLL 1040
            L P  ALA AL A+D++Q+        XXXXXXXXXXXXXXXXX +   D  TCAWAQ+LED+DL+D TSI AK+FR DFRVPY FFLRLV LVK K+WF+T  +DA GR  HPVEHKVLA LTILGRGN F SIY +SWMST TVQ +FH+FC+HFA EMYDEHI LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ RSYTGKEG PT+ YQVTV+HAGR +AVTEGFTGSTNDKTI+C D AV++IRTDKQY EK F V+ +DGTT TLKG  L
Sbjct:   12 LHPEVALAAALAALDDIQQDDMLSDAEXXXXXXXXXXXXXXXXXXKN--DTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYL 297          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 2.620e-101
Identity = 154/160 (96.25%), Postives = 156/160 (97.50%), Query Frame = 1
Query: 1027 KGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 1506
            KGCY L DNGYHKWQILIEPSKYPLSE+DLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNW+SSAGVG TLATEPEADCGS GTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR
Sbjct:  169 KGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 328          
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 3.920e-95
Identity = 145/149 (97.32%), Postives = 147/149 (98.66%), Query Frame = 1
Query: 1060 HKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 1506
            + WQILIEPSKYPLSENDLLF KRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDI+WLSR
Sbjct:   16 NNWQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIIWLSR 164          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPI7_ECTSI2.270e-20074.69Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KFR8_9PHAE3.070e-17264.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.090e-14774.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.340e-14374.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL1_9PHAE9.610e-12965.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE2.130e-11970.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE2.100e-11876.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE2.920e-11870.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE2.620e-10196.25DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZL5_9PHAE3.920e-9597.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:463616..466901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2217
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16920.1prot_C-linearis_contig93.16920.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 464643..466845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.803486-UTR-C-linearis_contig93:463615..4646421622930799.803486-UTR-C-linearis_contig93:463615..464642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 463616..464642 -
1690881256.3954208-UTR-C-linearis_contig93:463615..4646421690881256.3954208-UTR-C-linearis_contig93:463615..464642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 463616..464642 -
1622930799.8743289-UTR-C-linearis_contig93:466845..4669011622930799.8743289-UTR-C-linearis_contig93:466845..466901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 466846..466901 -
1690881256.4318204-UTR-C-linearis_contig93:466845..4669011690881256.4318204-UTR-C-linearis_contig93:466845..466901Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 466846..466901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.8169518-CDS-C-linearis_contig93:464642..4647671622930799.8169518-CDS-C-linearis_contig93:464642..464767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 464643..464767 -
1690881256.4059184-CDS-C-linearis_contig93:464642..4647671690881256.4059184-CDS-C-linearis_contig93:464642..464767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 464643..464767 -
1622930799.8377504-CDS-C-linearis_contig93:465162..4656971622930799.8377504-CDS-C-linearis_contig93:465162..465697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 465163..465697 -
1690881256.414648-CDS-C-linearis_contig93:465162..4656971690881256.414648-CDS-C-linearis_contig93:465162..465697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 465163..465697 -
1622930799.858283-CDS-C-linearis_contig93:466371..4668451622930799.858283-CDS-C-linearis_contig93:466371..466845Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 466372..466845 -
1690881256.4233377-CDS-C-linearis_contig93:466371..4668451690881256.4233377-CDS-C-linearis_contig93:466371..466845Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 466372..466845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16920.1

>prot_C-linearis_contig93.16920.1 ID=prot_C-linearis_contig93.16920.1|Name=mRNA_C-linearis_contig93.16920.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=378bp
MWKWLPSLALLAGSSSGACLTPTFNSSPGSLPMAAAGMDALLPATALAVA
LVAVDEVQRNDLSQQDLLEEDPANDLPRERLPRSQRQRKDVETCAWAQLL
EDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAVKDAVGR
ASHPVEHKVLAWLTILGRGNCFASIYQMSWMSTKTVQGMFHKFCKHFARE
MYDEHIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQA
RSYTGKEGFPTIAYQVTVDHAGRAMAVTEGFTGSTNDKTIVCWDAAVEKI
RTDKQYTEKTFDVYNEDGTTTTLKGVLLARRQRVPQVANPDRALQVPAER
ERPALFEEAGERTQGRGVLLRHPEGSL*
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mRNA from alignment at C-linearis_contig93:463616..466901-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16920.1 ID=mRNA_C-linearis_contig93.16920.1|Name=mRNA_C-linearis_contig93.16920.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3286bp|location=Sequence derived from alignment at C-linearis_contig93:463616..466901- (Chordaria linearis ClinC8C monoicous)
CTTTTTTTGAATCTCGCGACACCGTGGACACACCCACACACCCACGAGCA TCTCCCATGTGGAAGTGGCTGCCGTCTCTGGCGCTGCTCGCTGGCAGCAG CAGTGGCGCTTGCTTGACTCCAACCTTCAACAGCAGCCCGGGCTCTCTTC CGATGGCCGCCGCCGGTATGGATGCCCTGCTGCCAGCAACGGCGTTGGCC GTGGCGTTGGTTGCCGTAGATGAGGTCCAACGCAACGACTTGTCGCAGCA GGACCTCCTGGAGGAGGATCCGGCTAACGACCTTCCCCGCGAGAGACTTC CGCGGTCGCAGAGACAGAGGAAAGACGTGGAGACATGCGCTTGGGCACAG CTGTTGGAGGATAAAGACCTCGAGGACAGCACGAGCATCACCGCGAAGCA GTTTCGAGTGGACTTCCGCGTACCCTACACCTTCTTCCTTCGGCTTGTTG CCTTGGTCAAGAGCAAGAACTGGTTCTCGACTGCTGTGAAGGACGCCGTA GGTCGGGCAAGCCACCCAGTGGAGCACAAGGTAAGCTGAATAGATGCTGG ATTGTTGGAGTGCAGACTCTCTGTTCACAACCAACTAGACTGCTGCAGTA AACAATGTAGAGTTGGTTGGACAAAGCCAGCACGGCAGTTCTTTCTTCAA CTGAATGCCGTCTCCAGTACATCCATCCCTTGCACACTGCTTCTCGACTG CTGGTCGCGCTCGGCAGTCTTGTGGTGCACCCGGTCGCTCTTCTTTCATG CACAGCACAGCATAATATTGAGACCGGAAAGCTCTGCAGGCGTAGCTATT TTATGCAGTTTGTGTCAACCCTGTACCCTGTACCCATGTACAGCAGTACA GCAGTACGCAAGTAGCGAAAATCGTTCGTCACCTCGGTACTGCTGTACAG CAGTATTAACAGCTGCAGTATTAACAACTGTTGACAGCAGTACTGCTGTA TGTAGAGCTGCGCCTACTACTGCTGTAGGCAGCAGGAAGATACTGTATAT CTACGTTGGGTCGAGATGCCGAGATAAGGCAGGAGAGGAGATTCGAGTCA CCTCGTACAAGTGTTTGTTTGCTGTCGTACGTACAGCGCAAAACTCAGTC CTCCAGCCGGTGAGATGCTTCCACGCGCGGACAACAGCAGTACAATGACC ATGTGTACGCCTTGTATCCCCGTGTGTACATGCGTTGGCGACTTGGTGCT GCAGGTGCTGGCCTGGCTGACTATACTGGGGAGGGGCAACTGCTTTGCAA GCATATACCAGATGTCGTGGATGAGCACGAAGACCGTGCAGGGGATGTTC CACAAGTTCTGCAAGCACTTCGCACGGGAGATGTACGATGAACACATCCA CCTCCCTACGGAAGAGAGCGGCAAGCTGGACCACGTCATGAAGCAGTACG ATCGGCTTGGGTTTACGGGTGCGGTGGGTTCTATGGACGTCACACATATC GCTTGGAGCAGGTGTCCCTACAACCAAGCCCGTTCGTACACAGGCAAGGA GGGGTTTCCCACGATCGCGTACCAGGTCACGGTTGATCACGCCGGCCGGG CAATGGCCGTGACTGAGGGTTTCACCGGCTCGACGAACGACAAGACCATC GTCTGCTGGGATGCCGCGGTGGAGAAGATTCGCACGGACAAGCAGTACAC GGAGAAGACGTTCGACGTGTACAATGAGGACGGCACGACGACGACGCTCA AAGGGGTGCTACTTGCTCGTCGACAACGGGTACCACAAGGTGCACATGTA AATTAGTACCGTGTGCTTGAGTGGTCAAAACATTTGTTTGGACGAGACAT GTGTCCGGCCTGAGACAGAGAGTGTAGACAGACAGAGACAGAGAAAGAGA GAGCGCTGGCCAGCAAAGTCTTTGTTGTCGGGGAAAATGACGCAGCAGCT AGTTTCGGACCGTTTCAAACCGTTCATGGTATTGAGATGTCGGATACGGC AATCAAAACCTCGGCTGCCCGCTCTTGCAATATACTCCGGTGTTTCATAG CTGCTGTTATTTGTAGAGCGCCTCCCTTCAACCCCGAAGTCCCCCCTTGA GTCTCCGAGTTTAAATTTCACAGCTTCTAACAACGTAGCACCGAACCCGT CTTCGCCTTCCCTCTCTCTGTCGCATTTTTCCAGTGGCAAATCCTGATCG AGCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTTTCGAAGAGG CTGGAGAGCGTACGCAAGGACGTGGAGTGCTTCTTCGGCATCCTGAAGGG TCGCTTTAGGATCCTCAAGCTCGCCATGGCGTACCAGAGCCAGGAGCGCA TCGACAACGTGTTTTTCACGTGCTGCATCTTGCACAACATGCTGCACACC TTCGACGGCATGGACCAGCTGGTGGAGAACACGAACTGGATTAGCAGTGC TGGGGTGGGGGCCACGTTGGCGACGGAGCCGGAGGCGGACTGTGGATCTG TCGGGACGAAGGACGTCAACGACCAGCCTCAATTGGAGATCGGGCACACG GTGCGCAAGCGACAGCTCACCACGAGCTTCGCGTACCGCAAGAAGCACAA GAAGGACATTGTCTGGCTTTCTAGGTAGATCGAATGCGGTGTGTTGCAGC GTATTGCGTGTGTTGGGTCGCTGTTCAGCCGCAAACGTTGGTACACCCTC CGACCACTGTTAGATTTTCTTGTTGCCGCCGGCGTTTTGTTTTCGCAGTA CGGGCGTCGGCAACAATGCTTTTGATTGCCCCCCCCCCGTCCCCTGTACC CACGTTCTTTTTTATGCCACCCGACCTGTCTTGTATTTGGTCGTGTTTGT CTTGTAGCCTTGTTGACTTTTTTTTTGCGTACGGGCTAGTGCAGTAATAT TTGTATAACCTGGTTCTTGTTGTACAAAGACGTTGGAGCACCCTCCGACC TGTCTTGTCCCTGGGTGTTTGTTTTTCGTGTTTGTCCCCGGGTGTTCGTT TTTCGTTTTTGTCCCTGGGTATTCGTTTTTCGTTCTTGCCACATGCGTTA GTTTTGTTGGTACGGGCTTCGACAGCAATGCTTTTTCTCCCCCCCCCCCT GTGCCTGGCCGGCGAAAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGAT GCGAGGTCTATGGTCTAACGACTACGGCATGCATGATACTGAGTACACCA CCACCCCCCCTGTGTGGACGTCTTTCTTTGTGGACACACTTCGAAGTACA CATCGGGTTCCCTTCGCATGTCCCTGGAGGCATGAGATGTAGGTCGTCGA CCAAATTAAATTGGATTTTTTTCTCAAATGGAACCG
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Coding sequence (CDS) from alignment at C-linearis_contig93:463616..466901-

>mRNA_C-linearis_contig93.16920.1 ID=mRNA_C-linearis_contig93.16920.1|Name=mRNA_C-linearis_contig93.16920.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at C-linearis_contig93:463616..466901- (Chordaria linearis ClinC8C monoicous)
ATGTGGAAGTGGCTGCCGTCTCTGGCGCTGCTCGCTGGCAGCAGCAGTGG
CGCTTGCTTGACTCCAACCTTCAACAGCAGCCCGGGCTCTCTTCCGATGG
CCGCCGCCGGTATGGATGCCCTGCTGCCAGCAACGGCGTTGGCCGTGGCG
TTGGTTGCCGTAGATGAGGTCCAACGCAACGACTTGTCGCAGCAGGACCT
CCTGGAGGAGGATCCGGCTAACGACCTTCCCCGCGAGAGACTTCCGCGGT
CGCAGAGACAGAGGAAAGACGTGGAGACATGCGCTTGGGCACAGCTGTTG
GAGGATAAAGACCTCGAGGACAGCACGAGCATCACCGCGAAGCAGTTTCG
AGTGGACTTCCGCGTACCCTACACCTTCTTCCTTCGGCTTGTTGCCTTGG
TCAAGAGCAAGAACTGGTTCTCGACTGCTGTGAAGGACGCCGTAGGTCGG
GCAAGCCACCCAGTGGAGCACAAGATGTGGAAGTGGCTGCCGTCTCTGGC
GCTGCTCGCTGGCAGCAGCAGTGGCGCTTGCTTGACTCCAACCTTCAACA
GCAGCCCGGGCTCTCTTCCGATGGCCGCCGCCGGTATGGATGCCCTGCTG
CCAGCAACGGCGTTGGCCGTGGCGTTGGTTGCCGTAGATGAGGTCCAACG
CAACGACTTGTCGCAGCAGGACCTCCTGGAGGAGGATCCGGCTAACGACC
TTCCCCGCGAGAGACTTCCGCGGTCGCAGAGACAGAGGAAAGACGTGGAG
ACATGCGCTTGGGCACAGCTGTTGGAGGATAAAGACCTCGAGGACAGCAC
GAGCATCACCGCGAAGCAGTTTCGAGTGGACTTCCGCGTACCCTACACCT
TCTTCCTTCGGCTTGTTGCCTTGGTCAAGAGCAAGAACTGGTTCTCGACT
GCTGTGAAGGACGCCGTAGGTCGGGCAAGCCACCCAGTGGAGCACAAGGT
GCTGGCCTGGCTGACTATACTGGGGAGGGGCAACTGCTTTGCAAGCATAT
ACCAGATGTCGTGGATGAGCACGAAGACCGTGCAGGGGATGTTCCACAAG
TTCTGCAAGCACTTCGCACGGGAGATGTACGATGAACACATCCACCTCCC
TACGGAAGAGAGCGGCAAGCTGGACCACGTCATGAAGCAGTACGATCGGC
TTGGGTTTACGGGTGCGGTGGGTTCTATGGACGTCACACATATCGCTTGG
AGCAGGTGTCCCTACAACCAAGCCCGTTCGTACACAGGCAAGGAGGGGTT
TCCCACGATCGCGTACCAGGTCACGGTTGATCACGCCGGCCGGGCAATGG
CCGTGACTGAGGGTTTCACCGGCTCGACGAACGACAAGACCATCGTCTGC
TGGGATGCCGCGGTGGAGAAGATTCGCACGGACAAGCAGTACACGGAGAA
GACGTTCGACGTGTACAATGAGGACGGCACGACGACGACGCTCAAAGGGG
TGCTACTTGCTCGTCGACAACGGGTACCACAAGGTGCTGGCCTGGCTGAC
TATACTGGGGAGGGGCAACTGCTTTGCAAGCATATACCAGATGTCGTGGA
TGAGCACGAAGACCGTGCAGGGGATGTTCCACAAGTTCTGCAAGCACTTC
GCACGGGAGATGTACGATGAACACATCCACCTCCCTACGGAAGAGAGCGG
CAAGCTGGACCACGTCATGAAGCAGTACGATCGGCTTGGGTTTACGGGTG
CGGTGGGTTCTATGGACGTCACACATATCGCTTGGAGCAGGTGTCCCTAC
AACCAAGCCCGTTCGTACACAGGCAAGGAGGGGTTTCCCACGATCGCGTA
CCAGGTCACGGTTGATCACGCCGGCCGGGCAATGGCCGTGACTGAGGGTT
TCACCGGCTCGACGAACGACAAGACCATCGTCTGCTGGGATGCCGCGGTG
GAGAAGATTCGCACGGACAAGCAGTACACGGAGAAGACGTTCGACGTGTA
CAATGAGGACGGCACGACGACGACGCTCAAAGGGGTGCTACTTGCTCGTC
GACAACGGGTACCACAAGTGGCAAATCCTGATCGAGCCCTCCAAGTACCC
GCTGAGCGAGAACGACCTGCTCTTTTCGAAGAGGCTGGAGAGCGTACGCA
AGGACGTGGAGTGCTTCTTCGGCATCCTGAAGGGTCGCTTTAGTGGCAAA
TCCTGATCGAGCCCTCCAAGTACCCGCTGAGCGAGAACGACCTGCTCTTT
TCGAAGAGGCTGGAGAGCGTACGCAAGGACGTGGAGTGCTTCTTCGGCAT
CCTGAAGGGTCGCTTTAG
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