mRNA_C-linearis_contig93.16922.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16922.1
Unique NamemRNA_C-linearis_contig93.16922.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:528387..529607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.5423412-CDS-C-linearis_contig93:528386..5285431622930796.5423412-CDS-C-linearis_contig93:528386..528543Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 528387..528543 +
1690881254.8428805-CDS-C-linearis_contig93:528386..5285431690881254.8428805-CDS-C-linearis_contig93:528386..528543Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 528387..528543 +
1622930796.5607164-CDS-C-linearis_contig93:529557..5296071622930796.5607164-CDS-C-linearis_contig93:529557..529607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 529558..529607 +
1690881254.8573267-CDS-C-linearis_contig93:529557..5296071690881254.8573267-CDS-C-linearis_contig93:529557..529607Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 529558..529607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16922.1prot_C-linearis_contig93.16922.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 528387..529607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16922.1

>prot_C-linearis_contig93.16922.1 ID=prot_C-linearis_contig93.16922.1|Name=mRNA_C-linearis_contig93.16922.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=69bp
ARTSRRRTERAASEADESGRRSGRGGDGFDGRERGDGSDSQAGPDKCRSR
NTVRGHLERAGFELGPLRE
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mRNA from alignment at C-linearis_contig93:528387..529607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16922.1 ID=mRNA_C-linearis_contig93.16922.1|Name=mRNA_C-linearis_contig93.16922.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1221bp|location=Sequence derived from alignment at C-linearis_contig93:528387..529607+ (Chordaria linearis ClinC8C monoicous)
GCCCGAACCAGCCGGCGGAGAACAGAGCGAGCAGCCAGCGAAGCGGACGA
AAGCGGACGCAGGAGCGGGCGGGGCGGTGACGGTTTCGACGGTCGCGAGC
GTGGCGACGGCTCCGACAGCCAAGCGGGCCCTGACAAATGCAGATCCCGA
AACACAGGTGAGAGATGTTTCTCCCCGCTTGTTTTTAGCGCTTCACTAGG
CGACCGCCGCGATAGTTTCACCGCGACCACAGCGCCTTAGGGCCGTGGGG
GGGCACACTGGGTACAGTTCCGCGCGGTCGATAGATTTTGGTTCGAGGCG
GCGGTCGGCCACGCCACACCCTTTTTCTTTTGTTTGATTTTCGAAATACG
TGTGTTGTACAGGTCAATTACGCCCAAAACGTTTTCTTTTTTCTTTCCCG
CAAAAAATGTTTGCTCACCGCTGCGGCGCACCCCCCCGCGCTTTTCCCGC
ACCCGCAACAGGCGCCCACGTTTTCCCATTGCCGCGGACGCCGCCCAATC
CTAGCCTAGCCGCACCCCACACACCGTGTTATCCTCACACACCAGCCCCG
TTTTTTTTTCACCATGGGCAGTAGGAATCTTGCGGCAGTGTGTAAATACA
CGGCAGTAGGCTAAAACACGCACAGCAGTTGCCAAAACGTGTCCGTCGCC
GCACACAATCAACGCAAAACATAAGCACGAACGCACGCCCATTTTCTCTC
GACAAAGTGTACGTATTTTTAGCCTCACACACACACCTCTCATCGCTGTC
GTCGCACACAGACCAATCGATGTTTCTCCTTCATTTCCCTTTTACACGGC
ATGATCACACGCCCCCCGATTTTCCCCGGTGTTCTCCTGCCCTCTCTTTT
ACACGGCACCAGCACACGCCCTCCCACCATTTTCCTTTTTTTACACGGCG
AGCTCACAGGCACTCTTTTTCTTGCCATCCCTCTTTTTTACACGGCGCGC
AATTTTACACGGAACCGGCTACATCACAAGCTTTTTCGCCCTTTTCCTCT
TTACTCGGCTCCAGCCCACGCACTCCGCATTCTCACCCCCCCTCCCGCCT
TTTTTCCCTCACCTTTACACGGCGCCGCCACACACTTTCCACCTTCTTTC
CATCACACGGAACGCGCACATGCCCACCGACTCCCCCCCTTTACCCCTGT
TTCACCGCCCCGATTCCCAAGTTCGCGGGCACCTGGAACGGGCTGGTTTC
GAGCTCGGCCCACTTCGAGAA
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Coding sequence (CDS) from alignment at C-linearis_contig93:528387..529607+

>mRNA_C-linearis_contig93.16922.1 ID=mRNA_C-linearis_contig93.16922.1|Name=mRNA_C-linearis_contig93.16922.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at C-linearis_contig93:528387..529607+ (Chordaria linearis ClinC8C monoicous)
GCCCGAACCAGCCGGCGGAGAACAGAGCGAGCAGCCAGCGAAGCGGACGA
AAGCGGACGCAGGAGCGGGCGGGGCGGTGACGGTTTCGACGGTCGCGAGC
GTGGCGACGGCTCCGACAGCCAAGCGGGCCCTGACAAATGCAGATCCCGA
AACACAGGCCCGAACCAGCCGGCGGAGAACAGAGCGAGCAGCCAGCGAAG
CGGACGAAAGCGGACGCAGGAGCGGGCGGGGCGGTGACGGTTTCGACGGT
CGCGAGCGTGGCGACGGCTCCGACAGCCAAGCGGGCCCTGACAAATGCAG
ATCCCGAAACACAGTTCGCGGGCACCTGGAACGGGCTGGTTTCGAGCTCG
GCCCACTTCGAGAATTCGCGGGCACCTGGAACGGGCTGGTTTCGAGCTCG
GCCCACTTCGAGAA
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