mRNA_C-linearis_contig90.16783.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig90.16783.1
Unique NamemRNA_C-linearis_contig90.16783.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:562064..562861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16783.1prot_C-linearis_contig90.16783.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig90 562064..562854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.2951765-CDS-C-linearis_contig90:562063..5622861622930769.2951765-CDS-C-linearis_contig90:562063..562286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 562064..562286 -
1690881240.3441157-CDS-C-linearis_contig90:562063..5622861690881240.3441157-CDS-C-linearis_contig90:562063..562286Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 562064..562286 -
1622930769.3199573-CDS-C-linearis_contig90:562819..5628541622930769.3199573-CDS-C-linearis_contig90:562819..562854Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 562820..562854 -
1690881240.3568263-CDS-C-linearis_contig90:562819..5628541690881240.3568263-CDS-C-linearis_contig90:562819..562854Chordaria linearis ClinC8C monoicousCDSC-linearis_contig90 562820..562854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.340149-UTR-C-linearis_contig90:562854..5628611622930769.340149-UTR-C-linearis_contig90:562854..562861Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 562855..562861 -
1690881240.3655946-UTR-C-linearis_contig90:562854..5628611690881240.3655946-UTR-C-linearis_contig90:562854..562861Chordaria linearis ClinC8C monoicousUTRC-linearis_contig90 562855..562861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig90.16783.1

>prot_C-linearis_contig90.16783.1 ID=prot_C-linearis_contig90.16783.1|Name=mRNA_C-linearis_contig90.16783.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=86bp
MSKEWELEKGLRTISGSAGGRKKKSARVQAATKTPASAPAPPSNAAAGAG
AAASSSGTPLRQSAAGSGVSPATREAAEELHGLAGS
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mRNA from alignment at C-linearis_contig90:562064..562861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig90.16783.1 ID=mRNA_C-linearis_contig90.16783.1|Name=mRNA_C-linearis_contig90.16783.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at C-linearis_contig90:562064..562861- (Chordaria linearis ClinC8C monoicous)
AAAGAAGATGTCGAAGGAATGGGAGCTGGAAAAGGGCCTGCGGTAAGTAC
ACTGGCATTTAGCATGCGCGATTGTCACCCTTACCGCTATCCTTGCTTAA
GCCCTGTTCACCTAAAAATTTCAGGATTTTAGGATTTCAGGATTTCAGGA
TTTCACGTTTTACCGCCTCGGGGGGCGGTAAAACGTGAAATCCTCACAGG
AACCCCCTCACGTTAGTGGGTGGTGGTAGGGGTACGACCTCTCTCCAAAC
GTTGCAATGGCAAAGAGTTAGGGCTGGGTACTGGACCAGTACCTACTGGT
AGTGCTACTGGTACTGGCAGTATACTGGTACTGGTTTTGGAACCGCCAGT
ACCGCCAGTACTTTAGTGAAGCCAATTTGTTGCTCTAGTGAAGCCAAATC
GCGTAAAAAAGCGCCCGCAGCCAGTACCTAGCCCTACAGAGAGTGGTACC
GCATAAGCACAACACGGCCAAGGGCGGCGCAGGTCTAGACGCCACAGCAG
TGCTACTGATGAATCCCCTGCTGTCACGAGTGATTCTAGCCGGCCTCCTC
TTGGTGCTGCTGCTGCACGCCCCAGCACCATCAGCGGCAGCGCGGGCGGC
CGCAAGAAGAAGAGCGCTCGAGTACAAGCCGCGACCAAGACCCCCGCATC
CGCACCCGCACCCCCAAGCAACGCTGCAGCGGGTGCGGGTGCCGCTGCCT
CTTCCTCTGGCACGCCGCTTCGGCAATCGGCTGCTGGAAGTGGTGTATCT
CCTGCGACACGCGAGGCGGCTGAAGAACTGCATGGTCTCGCTGGGTCC
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Coding sequence (CDS) from alignment at C-linearis_contig90:562064..562861-

>mRNA_C-linearis_contig90.16783.1 ID=mRNA_C-linearis_contig90.16783.1|Name=mRNA_C-linearis_contig90.16783.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at C-linearis_contig90:562064..562861- (Chordaria linearis ClinC8C monoicous)
ATGTCGAAGGAATGGGAGCTGGAAAAGGGCCTGCGATGTCGAAGGAATGG
GAGCTGGAAAAGGGCCTGCGCACCATCAGCGGCAGCGCGGGCGGCCGCAA
GAAGAAGAGCGCTCGAGTACAAGCCGCGACCAAGACCCCCGCATCCGCAC
CCGCACCCCCAAGCAACGCTGCAGCGGGTGCGGGTGCCGCTGCCTCTTCC
TCTGGCACGCCGCTTCGGCAATCGGCTGCTGGAAGTGGTGTATCTCCTGC
GACACGCGAGGCGGCTGAAGAACTGCATGGTCTCGCTGGGTCCCACCATC
AGCGGCAGCGCGGGCGGCCGCAAGAAGAAGAGCGCTCGAGTACAAGCCGC
GACCAAGACCCCCGCATCCGCACCCGCACCCCCAAGCAACGCTGCAGCGG
GTGCGGGTGCCGCTGCCTCTTCCTCTGGCACGCCGCTTCGGCAATCGGCT
GCTGGAAGTGGTGTATCTCCTGCGACACGCGAGGCGGCTGAAGAACTGCA
TGGTCTCGCTGGGTCC
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