mRNA_C-linearis_contig9.16569.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI) HSP 1 Score: 1276 bits (3302), Expect = 0.000e+0 Identity = 905/1482 (61.07%), Postives = 1002/1482 (67.61%), Query Frame = 3
Query: 24 KHNLKLQLEKLDKGNAASPGGRRNKALFAGLLGSERAVASSGGGTRGGKXXXXXXXXXXDGAGDC---VLPVGEHGGKSPRNFTPISELVCDGGGGGGRSVLDELRRGFSAKDASS---AAQPGSRPTVKIGKRLRDNTPPK-KNLEFPSSSKPPLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDDDLFNSVNLDVRFVRCEQQKQLQQKRQHERRISGGQEGVGGDGYFRAPPPPTPSRHTFQQTPPSRK------------------------QAKADVAAMEMEVMGKLQRLTELQTQSNQALMEGYEVPERLQEERQSLEKAIPALQKALKAAKATPAGACSTTMTPSTARTPLGNLPMADGGXXXXXXXXXXXXXXXTFVMRTQQSSWGSPPP-STPHDRYAGAGTQPGS---SGAF-EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWVGYGGNEGKPRNYNXXXXXXXXXXXXXXXXXXXEVPRCTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDFFQWLDGEGNDAGXXXXXXXVXXXXXMPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRHTLVQLVSVWRGDTVKALDQRGVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRN--GSERFKVGTSMHDDSPRDQNTRTTQQLIYRTKAKAAKKGKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGGTPGTALSISPDAVSIASTGNDPEVRGFEDDSDDDFEESLMPKRRKSIGS------GAGGSHGWKGKETKKTLKRMSQSQREGFEEALIDWRNDQAEKFQARYFFILPAPEVLEVLHKVPITKEELRTIGSWRGDQKLANHGDSLVAMIQGFLEKHHITLMGEFPWEEDQDAQTVEF 4337
K NLKLQLEKL+K NAASPGGRRNK LFAGLLG + A + RGG+ XXXXXXXXX V+ +GEHGGK+ R+FTPI++L D G G GR +LD+LRR + AKD SS A +PGSRP+V GKRLRD PK K + P ++ A XXXXXXXXXXXXXXXXXXXXXX FD+ + +LD ++ +Q +A+AD+A EME+ GK+QRL ELQ Q+ QALMEGYEVP++LQEERQ LE AI L K L+A KAT A ++ TP ARTPLGNLPM G XXXXXXX TFVMRTQQS WGSPPP TP DRYAG+G+ S AF G XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX + EHGERCVKL S S+ NPGREF+KC PK+GG+QC FF+WLDGEGN + PGG+A QL+I +VS IFGHAKFR GQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQV+QM GV+A Y+NSEQDYDSEVRVVMDQLY LQDYGGLKLLYITPEKFCRSPSM KALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKA +LDE +A V+QSFPGQSGIVYCLSRKDCEKVA+GL KKL E GHRGRFRVDFYHADRTA EKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDKSL F+RR +NLQEVYKCVRFCINEVECRRVLILEFFGEHFPR RC+ATCDNCIAMQGC +ETKDCTEQA LLRLSE M R+ RHTLVQLVSVWRGD+VK LDQRG RQLE AG CKDM KDE+IRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYC PGR + + G R K G + + +A K G+D XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX GGTPGTAL ISP +S+ S+G G GG G K+T++TLKRMS R F++ALI WR+++AE+F RYF+I P E+LEV+HKVP+T EEL IGSWRG+QKLA HG+SL+++I+G+++ ++ITL G+FPW DQ+ +T F
Sbjct: 2 KDNLKLQLEKLEKDNAASPGGRRNKGLFAGLLGIDGAPS------RGGQRXXXXXXXXXXXXXXXXXFVVMIGEHGGKASRSFTPIADLGVDTGAGSGRGLLDQLRRSYKAKDGSSSSTAPKPGSRPSV--GKRLRDEIAPKQKRFDHPGATTATAAPSSKGFGXXXXXXXXXXXXXXXXXXXXXXLYDAD------------FDEAAAVAFDLDQAVIQAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAQADIATTEMEIAGKIQRLGELQAQTTQALMEGYEVPQKLQEERQGLETAIAGLGKTLRALKATAAAESPSSQTPRGARTPLGNLPMTGGDGXXXXXXXH------TFVMRTQQS-WGSPPPPGTPRDRYAGSGSGGADHQRSPAFGRGAGGYDNSYGGSSYDNSSSGGXXXXXXXYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYNNNREDGGDGTPLCEHGERCVKLTSTSENNPGREFYKCPLPKNGGEQCGFFEWLDGEGNGGNRPSGGGGL------PGGVANGKQLDIRKEVSDIFGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVAQMRATGVEAAYINSEQDYDSEVRVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAAVLDE---------------IAKVMQSFPGQSGIVYCLSRKDCEKVASGLLKKLSETT--GGHRGRFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDKSLPFQRRQSNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRGRCKATCDNCIAMQGCEKETKDCTEQAGRLLRLSEVMVEREIRHTLVQLVSVWRGDSVKTLDQRGARQLECAGSCKDMTKDEAIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCSPGRAGLQAQESQGEIRGKSG---------------------KERGRAKKTGRDKQXXXXXXXXXXXXXXXXXXXXXXXHWNVGEARKGKKAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPQKRKGPGHRG---------------GGTPGTALDISPGVISVPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGGGKGKGHKKTRETLKRMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWG-DQEIKTAGF 1396
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE) HSP 1 Score: 599 bits (1544), Expect = 3.910e-193 Identity = 312/387 (80.62%), Postives = 320/387 (82.69%), Query Frame = 3
Query: 1713 MPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 2873
+PGG+A QL+I +VS IFGHAKFR GQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQV RVVMDQLY LQDYGGLKLLYITPEKFCRSPSM KALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAG+LDE +A V+QSFPGQSGI VA+GL KKL E GHRGRFRVDFYHADRTA EKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE
Sbjct: 22 LPGGVANGKQLDIRKEVSDIFGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQV-----------------------RVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGVLDE---------------IAKVMQSFPGQSGI-----------VASGLLKKLSETT--GGHRGRFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 357
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA) HSP 1 Score: 552 bits (1423), Expect = 3.970e-164 Identity = 303/645 (46.98%), Postives = 406/645 (62.95%), Query Frame = 3
Query: 1512 EVPRCTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDFFQWLDG-EGNDAGXXXXXXXVXXXXXMPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNR---DKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRH-TLVQLVSVWRGDTVKALDQR-GVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKV 3428
+ PRC HG C L +N+ N GREFFKCS P+ G+ CDFFQW DG EGN GG LN+ + R+FGH FR GQE+VI A++G+DVFVLMPTGGGKSLCYQLPA CCPGLAVV SPL+SL+QDQV +L GV++ + +S QDY SE + QL +GG+KLLY+TPEK S M L+RLH+KGL+SRF++DEAHC+SDWGHDFRPDY +LG LR+D+P VP+MALTATA+ V +D +R L +RN SFNRPNL+YE+R K + D +A +V P SG++YCLSRK+CE++A L KKL E G R V FYHAD +E+ H++WS GRI+++CAT+AFGMGI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG D++C++F++Y+DK LE M+ DK RR + ++YKCV++C NE CRR + LEFFG+ F R +C TCDNC A G + ++ T +A ++ L + +++ + T++QL ++RG KA+ + + +EG G K + ++ M+ L E S + FT+ Y G +A L+ GSE+F V
Sbjct: 438 DTPRCPGHGLPCRLLTANTSANSGREFFKCSLPE--GENCDFFQWKDGMEGN---LNNNNFLEGSSTSSAGGDV----LNMREENRRVFGHRSFRKGQEDVIEKAIQGRDVFVLMPTGGGKSLCYQLPAWCCPGLAVVVSPLLSLIQDQVQSLLKNGVKSVFFSSAQDYHSEQVDINRQLNETTAHGGVKLLYLTPEKLSHSNQMQSILRRLHNKGLISRFIVDEAHCLSDWGHDFRPDYNQLGRLRRDYPGVPLMALTATASEKVVNDAVRALGMRNEYRYQSSFNRPNLRYEVRKKDGKVTDA---------------IADIVAQRPNDSGVIYCLSRKNCEQLAEKLQKKLRE----KGCRNVL-VSFYHADLDPKEREHRHKQWSVGRINVLCATVAFGMGIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLEKMIRNGSDDKCNPSIRR--KVDQLYKCVQYCENEFRCRRAMQLEFFGQKFDRAKCNQTCDNCKA--GRLPDERNMTAEAITIINLFNSASNQSRKGITMLQLAELYRGSKSKAITKSYPINVIEGFGAGSKFKKHDIDKITHGMIFQRILVENSVENKGG------FTSDYVALGEKAASLQRGSEKFIV 1043
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A836CQM3_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQM3_9STRA) HSP 1 Score: 543 bits (1399), Expect = 9.070e-163 Identity = 312/655 (47.63%), Postives = 398/655 (60.76%), Query Frame = 3
Query: 1512 EVPRCTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDFFQWLD--GEGNDAGXXXXXXXVXXXXXMPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDT-----IRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADR----TAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNC--IAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRHTLVQLVSVWRGDT---VKALDQRGVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKV 3428
+ P C EHG V S + + GR F+ CS+ +D G+QC+FFQW D GE AG + QL+I+ Q+ +FGH +FR+GQEEV+ AM+G+DVFVL+PTGGGKSLCYQLPA CCPGL VVFSPL+SLV DQ +E+ VMD+LY L +GGLKLLYITPEK +S ++ + L+RL+ +GLLSRFVIDEAHC+SDWGHDFRPDYLKL LR+D+P VPIMALTATA+ V DD +RRL LR + +SFNRPNL+YEIR K I+++ +A VV +P +SGIVYCLS+++CE V+ L G A+ R RVDFYHA+R ++ EK R H EW+ GR LICAT+AFGMGINK DVRYVIHHS+PK+LTH YQESGRAGRDG ++CIVFF++ DK RL+NM+ + VECRRVL+L FGE F R RC ATCDNC +A GC +C +Q LLRL+ + + R TL+ L S+WRG+ +KAL +L G +K E+ R+ QQMVL +L+E + +TG GA G F A+Y + G A L + F V
Sbjct: 248 DAPMC-EHGLPAVCRTSGTSVSAGRRFYCCSKGRDSGEQCNFFQWKDVGGEWEGAGGSGQQAD------------QSQQLDIFEQLRTVFGHLRFRHGQEEVVRAAMRGRDVFVLIPTGGGKSLCYQLPAVCCPGLTVVFSPLLSLVHDQ---------------------AEIAPVMDELYQLPPFGGLKLLYITPEKLDKSGAIKQVLRRLYERGLLSRFVIDEAHCLSDWGHDFRPDYLKLDSLRRDYPKVPIMALTATADKKVMDDAXXXXXVRRLGLREHLLHKQSFNRPNLEYEIRKKSKKIVED---------------IAEVVLRYPDESGIVYCLSKRECEVVSEKLNAHEGIRAK------RIRVDFYHAERAPQASSSEKKRAHTEWTMGRTKLICATVAFGMGINKIDVRYVIHHSLPKSLTHLYQESGRAGRDGKRAECIVFFSFNDKNRLKNMITK--------------------------VECRRVLLLGHFGEPFQRARCNATCDNCRALAQGGCEAREVNCLQQGRELLRLATQLVLQGRRLTLMHLASLWRGEKHAGLKAL-LPAAEKLPDFGAGSGFSKAEAERMVQQMVLHHYLDEDTVETGNGGAGGLKFQASYVKRGHLAAGLESNDGAFTV 820
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A7S4SBW1_9STRA (ATP-dependent DNA helicase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SBW1_9STRA) HSP 1 Score: 513 bits (1322), Expect = 1.570e-156 Identity = 279/569 (49.03%), Postives = 371/569 (65.20%), Query Frame = 3
Query: 1515 VPRCTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDFFQWLDG-EGNDAGXXXXXXXVXXXXXMPGGIAREGQL-NIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMV----NRDKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLS-EAMTSRDTRH-TLVQLVSVWRGDTVK 3197
P C H C + ++ N GR+F+KCS P+ G QCDFFQW DG EGN + G+ G+L +IY + R FGH FR GQ++VI AM+G+DVFVLMPTGGGKSLCYQLPA CCPG+AVV SPL+SL+QDQV M +GV++ +LNS QD++SE R ++ +L ++ +GG+KLLYITPEK S + + +L+++G+LSRFV+DEAHC+SDWGHDFRPDY +LG LR D+P+VP+MALTATAN V D IR L++RN + SFNRPNL YE+R K + +D +MA + SG++YCLSRKDCE V+ L +KL E +G + G V FYHA+ E+ R H W +GRI ++CATIAFGMGI+KPDVRYV+H+SMPK++TH+YQESGRAGRDG + CI+F++YRDK LE M+ N + S R+++ L Y C+R+C NE CRR + LEFFGE F R C TCDNC QG + D T+ A +++L + ++ R TLVQL +++G K
Sbjct: 186 TPLCPGHNAPCRTVTVSTANNAGRQFYKCSMPE--GKQCDFFQWADGMEGN------LNDSMSGGMGGGDGVYGSGELKDIYAESRRKFGHNSFRPGQKKVIEKAMQGRDVFVLMPTGGGKSLCYQLPAWCCPGVAVVVSPLLSLIQDQVQSMTKLGVESVFLNSMQDFESEQRDILRRLDNVSSHGGIKLLYITPEKLRHSGMIKSVMTKLYNRGMLSRFVVDEAHCLSDWGHDFRPDYNQLGCLRSDYPNVPMMALTATANEKVVQDAIRALKMRNEHLYRSSFNRPNLAYEVRKKDSKSID---------------VMADYIAKRRNDSGVIYCLSRKDCETVSDKLQEKLRE--KGCSNIG---VSFYHAELDPSERQRRHHMWGSGRISVLCATIAFGMGIDKPDVRYVMHYSMPKSITHYYQESGRAGRDGDKADCILFYSYRDKKILEMMIRKTANNQNNQSTRRKIDQL---YSCLRYCENEFLCRRTMQLEFFGEKFDRSLCNKTCDNC--RQGKIADRHDLTDVAKEIIKLFLDTQAEKNGRGVTLVQLTDLFKGSKNK 721
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A1E7EUD2_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUD2_9STRA) HSP 1 Score: 512 bits (1318), Expect = 2.150e-150 Identity = 304/652 (46.63%), Postives = 407/652 (62.42%), Query Frame = 3
Query: 1515 VPRCTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDFFQWLDGE-----GNDAGXXXXXXXVXXXXXMPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDK----SLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRHT----LVQLVSVWRGDTVKALDQRGVRQ-LEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKV 3428
P C H + C +N+ N GR+FFKCS P+ G CDFFQW DG+ ND XXXXXXX XXXXX + L++Y + R+FGH FR GQ+ VI A++GKDVFVLMPTGGGKSLCYQLPA CCPGLAVV SPL+SL+QDQV + GV++ + +S QDY +E + QL +GG+KLLY+TPEK S M L+RL++KGL+SRFV+DEAHC+SDWGHDFRPDY +LG+LRKD+P VP+MALTATAN V +D I L + +R K ++D +A ++ S P SG++YCLSRK+CE+VA L KL E + GH G V +YHA+ +E+ R H++WS+GRI+++CAT+AFGMGI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG ++ CI+F++Y+DK LE M+ S S +R+++ L Y C+ +C ++ CRR + LEFFGE F R +C TCDNC A G + +D T++A ++ L + SR R+T ++QL ++RG KA+ + LEG G KDE R+ +M+ L E S + TG FT+ Y G A L+NGS+RF V
Sbjct: 396 TPLCPGHSQPCRVFTANTSTNMGRQFFKCSLPE--GQNCDFFQWKDGDVEENNWNDXXXXXXXXXXXXXXXXXXXTSGGNILDMYEENQRVFGHRTFRKGQQLVIEKAIQGKDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSLTKYGVKSVFFSSHQDYQTEQVDINRQLNQTTAHGGVKLLYLTPEKLRHSNQMQSILRRLYNKGLISRFVVDEAHCLSDWGHDFRPDYNQLGVLRKDYPGVPLMALTATANKKVVNDAIGALGM------------------LRKKDGKVIDA---------------IADLIASRPKDSGVIYCLSRKNCEQVAEKLRGKLRE--KKCGHVG---VSYYHAELDPQERERRHKQWSSGRINVLCATVAFGMGIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDNADCILFYSYKDKQVLEKMIRSGNGGRYSPSIQRKIDQL---YGCLNYCEDDFRCRRTMQLEFFGETFDRAKCNKTCDNCKA--GRLADNRDMTKEAISIINLFNSA-SRKKRNTSGITMLQLTDLYRGSKSKAITKNYTTSGLEGYGAGSKYKKDEVERITHKMIFDRILIENSVEN-----TG-GFTSDYVSLGDAAPPLQNGSKRFFV 995
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: B7FSW6_PHATC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSW6_PHATC) HSP 1 Score: 473 bits (1217), Expect = 1.670e-145 Identity = 247/522 (47.32%), Postives = 343/522 (65.71%), Query Frame = 3
Query: 1767 RIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRD-KSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRL-SEAMTSRDTRHTLVQLVSVWRGD----TVKALDQRGVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEE 3314
R FGH +FR GQ+++I +A++G D+FVLMPTGGGKSLCYQLPA CCPGLAVV SPL+SL+QDQV + +G++A +L S QDY +E + +L +GG+KLLYITPEK S + ++RL +K L+SRFV+DEAHC+SDWGHDFRPDY++L +R+++P+VP+MALTATAN V +D IR L ++N SFNR NL YE+R K L+ ++A + S P +SG+VYCLSRKDCEK + +KL E AR R R+ FYHAD E+ + HREWS G + ++CAT+AFGMGI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG D+ CI+++ Y+DK LEN++ + K+ + + ++Y CV++C + CRR + LEFFGEHF R +C TCDNC A G + +D TE A ++ L ++ + TL Q+ ++RG VK +D V++L G G ++ K E ++ ++ L E
Sbjct: 7 RKFGHQEFRAGQQKIIKNAIQGCDIFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQALTQLGIEAVFLASTQDYQTEQMDITRRLNETTAHGGVKLLYITPEKLNNSTMIQNIIRRLCNKNLISRFVVDEAHCLSDWGHDFRPDYMRLDSVRREYPNVPLMALTATANEKVVNDAIRALGMKNEYRYQSSFNRSNLHYEVRKKDGQTLE---------------VIADYIASRPKESGVVYCLSRKDCEKTS----QKLQEIARQRPGCNRIRISFYHADLDPHEREQRHREWSNGGVSVLCATVAFGMGIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDDADCILYYHYKDKKILENLITKSSKNPHSQTTRRQIDQLYGCVQYCEDLFRCRRTMQLEFFGEHFERGKCNKTCDNCKA--GRTPDRRDLTEDAKTIINLHTDVSKQKRNGTTLHQITELFRGSKSQAAVKFID---VKKLPGYGAGRNYKKFEIDKIVHALIFERTLVE 504
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: B8BWN4_THAPS (ATP-dependent DNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWN4_THAPS) HSP 1 Score: 472 bits (1214), Expect = 6.810e-145 Identity = 259/548 (47.26%), Postives = 346/548 (63.14%), Query Frame = 3
Query: 1824 MKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNR--DKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRHTLVQLVSVWRGDTVKALDQRGVRQ-LEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKVGTSMHDDSPR 3458
MKG+DVFVLMPTGGGKSLCYQLPA CCPGL+V+ SPL+SL++DQV M +GV++ +LNS Q ++ E R ++D+L +GG+KLLYITPEK S + L L + G +SRFV+DEAHC+SDWGHDFRPDY +LG LR+D+P+VP+MALTATAN V D IR L +RN SFNRPNL YE+R K +D +A + SG++YCLSRKDCE ++ L KL E G R RV +YHA+ E+ + H WS G I ++CATIAFGMGI+KPDVRYV+H+SMPK++TH+YQESGRAGRDG ++ CI+F+AY+DK LE M+ + + + L + +Y C+R+C N ECRR L L+FFGE F + +C TCDNC G +E +D T A +L+L + SR TL QL +WRG KA + + + L G G K ++K E+ + MV +EE+S +T TG F A Y PG+ A +++G ++F V S D P+
Sbjct: 1 MKGRDVFVLMPTGGGKSLCYQLPAWCCPGLSVIISPLLSLIEDQVQSMTKLGVRSVFLNSAQSWEDEQRNIVDELRRTPIHGGIKLLYITPEKLAHSNMIKGVLSNLANNGRISRFVVDEAHCLSDWGHDFRPDYNQLGCLRRDYPNVPLMALTATANKKVVSDAIRALGMRNEYSYRSSFNRPNLHYEVRRKDNKTVDT---------------IADYIAERRNDSGVIYCLSRKDCETLSDKLNNKLRE----KGFRD-VRVSYYHAELDQRERHQRHHAWSLGHISVLCATIAFGMGIDKPDVRYVMHYSMPKSITHYYQESGRAGRDGGNADCILFYAYKDKKTLEMMIRKAAGHNQRSQATLRKIDHLYTCLRYCENTFECRRTLQLQFFGEMFEKHKCNKTCDNCRL--GLVEEKRDMTNSAREILQLLD---SRGRGVTLHQLAELWRGTKSKAHTKFLITENLNGYGKGKAVSKSETDALVHAMVFEGVIEELSEET-----TG-GFAADYVHPGKNAALVQSGRQQFFV--SFPKDPPK 515
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: A0A4D9D6D9_9STRA (DNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D9_9STRA) HSP 1 Score: 483 bits (1242), Expect = 2.210e-138 Identity = 283/637 (44.43%), Postives = 372/637 (58.40%), Query Frame = 3
Query: 1524 CTEHGERCVKLRSNSDKNPGREFFKCSRPKDGGDQCDF-FQWLDGEGND-AGXXXXXXXVXXXXXMPGGIAREGQLNIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNRDKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMTSRDTRHTLVQLVSVWRGDTVKALDQRGVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKV 3428
C++ G+ + +D N GR+F+KC CD F+W D EG + G +P + + RIFGH FR GQE+V+ A+ +DVFVLMPTGGGKSLCYQLPAC PG+ VVFSPL+SL+QDQV + GV A L S QDY++E R +MD+LYHL +G LKLLYITPEKF RS +M+K LQRL +GLL+RFVIDEAHC+S WGHDFRPDYL L +R FP +PIMALTATAN + +D ++ L++++P + +SFNRPNL Y+IRPK P L A + V + P SGIVYCLSRKD E++AT L +K R RV +YHAD +E+ R HREWS GR+ +I AT+AFGMGINKPDVRYVIH S+PK+LTH+YQESGRAGRDGL ++C ++++++ V+CRR LI+++FGE F RC+ TCDNC + D TE A ++RL ++M + TL QL S+ RG+ + + G + E G +K + R+ QQMVL FL E + A+G F A Y + G +A L N + R V
Sbjct: 408 CSKCGKPLEARVARTDTNAGRKFWKCF-------DCDADFRWDDEEGGERGGDYGERASFPIHHELP--VHNISMQDAAQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAVKLLKMQSPYIHQQSFNRPNLTYDIRPKSKA--------SPAFLGAIDEIAEYVKKKGPRSSGIVYCLSRKDTERIATALAEKT-----------RLRVGYYHADMPPKERERAHREWSQGRMPVIAATVAFGMGINKPDVRYVIHFSLPKSLTHYYQESGRAGRDGLPAECRMYYSFK-------------------------------------VDCRRTLIMQYFGEAFDPSRCKRTCDNC--RNEAAVQALDLTELAKNVIRLVDSMAGM--QFTLCQLASLVRGENLAWARKTGADKEELFGCGSQHSKGDVERLTQQMVLQHFLAEEMVEL-ANG-----FPANYVQLGVEAEALMNDASRRLV 969
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Match: K0SNN9_THAOC (DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNN9_THAOC) HSP 1 Score: 471 bits (1213), Expect = 8.510e-136 Identity = 264/592 (44.59%), Postives = 362/592 (61.15%), Query Frame = 3
Query: 1746 NIYTQVSRIFGHAKFRNGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVSQMLTIGVQAGYLNSEQDYDSEVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAGILDEARATQPHSLRASHFLMATVVQSFPGQSGIVYCLSRKDCEKVATGLTKKLGEAARGSGHRGRFRVDFYHADRTAEEKARVHREWSAGRIHLICATIAFGMG---------------------------INKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLENMVNR-DKSLSFERRLNNLQEVYKCVRFCINEVECRRVLILEFFGEHFPRERCRATCDNCIAMQGCGQETKDCTEQAACLLRLSEAMT-SRDTRH-TLVQLVSVWRGDTVKALDQ-RGVRQLEGAGGCKDMAKDESIRVAQQMVLSSFLEEVSCDTGASGATGQAFTAAYCRPGRQAFKLRNGSERFKV 3428
N+++++ +FGH +FR GQ+EVI +AM+G+DVFVL+PTGGGKSLCYQLPA C PGL+VV SPL++L++DQV M+ GV++ +LNS Q Y+ E + ++ +L L +GG+KLLY+TPEK S + +Q L + L+SRFV+DEAHC+SDWGHDFRPDY L LR D+P VPIMALTATAN V D+++ L +RN V SFNRPNL YE+R K +D + + G+SG++YCLS+KDCE V+ L KL E G R RV FYHAD EKAR H EWS+GRI ++CATIAFGMG ++KPDVR+V+H+SMPK++TH+YQESGRAGRDG ++ CI+F++Y+DK LE M+ + D + ++++Y CVR+C N ECRR L L FFGE+F + C TCDNC A + E ++ T +A ++ L ++++ R+ R TLVQLV +WRG K + L G +D+ R+A MV L E++ ++ +G F Y PG A + NGS F V
Sbjct: 456 NVFSELKTMFGHDRFRPGQQEVIENAMRGRDVFVLLPTGGGKSLCYQLPAWCQPGLSVVISPLLALMEDQVQSMVRAGVESVFLNSTQSYEDEQQFIVQKLNQLTPHGGIKLLYVTPEKLTHSGMIRGIIQSLSQRNLVSRFVVDEAHCLSDWGHDFRPDYKNLRNLRHDYPTVPIMALTATANEQVVKDSMQVLGMRNAFVFRSSFNRPNLHYEVRKKDTKTIDT---------------ICEYIAERRGESGVIYCLSKKDCENVSQKLNNKLRE----KGIRN-IRVSFYHADVDPAEKARRHNEWSSGRIAVLCATIAFGMGSKSSALLFCAFSATCPSDPLLSLFRHSVDKPDVRFVMHYSMPKSITHYYQESGRAGRDGNNADCILFYSYKDKKTLEFMIKKADNVRNSAACRRKIEQLYTCVRYCENTFECRRTLQLRFFGENFDKCVCNRTCDNCRADRV--PERRNMTSEAREVIALLDSLSHQRNGRGVTLVQLVELWRGSKSKQHTKFLNTSTLVNYGAGTKYRRDDVDRIAHSMVFDGILNEIA-ESNTAG-----FNCDYVSPGPNANAVMNGSFTFFV 1019 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16569.1 >prot_C-linearis_contig9.16569.1 ID=prot_C-linearis_contig9.16569.1|Name=mRNA_C-linearis_contig9.16569.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1510bp MPSTKHNLKLQLEKLDKGNAASPGGRRNKALFAGLLGSERAVASSGGGTRback to top mRNA from alignment at C-linearis_contig9:1446425..1469141+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16569.1 ID=mRNA_C-linearis_contig9.16569.1|Name=mRNA_C-linearis_contig9.16569.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=22717bp|location=Sequence derived from alignment at C-linearis_contig9:1446425..1469141+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:1446425..1469141+ >mRNA_C-linearis_contig9.16569.1 ID=mRNA_C-linearis_contig9.16569.1|Name=mRNA_C-linearis_contig9.16569.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9060bp|location=Sequence derived from alignment at C-linearis_contig9:1446425..1469141+ (Chordaria linearis ClinC8C monoicous)back to top |