mRNA_C-linearis_contig9.16463.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16463.1
Unique NamemRNA_C-linearis_contig9.16463.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:230884..231677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size794
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16463.1prot_C-linearis_contig9.16463.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 231121..231594 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.3689513-UTR-C-linearis_contig9:230883..2311201622930705.3689513-UTR-C-linearis_contig9:230883..231120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 230884..231120 +
1690881206.6276562-UTR-C-linearis_contig9:230883..2311201690881206.6276562-UTR-C-linearis_contig9:230883..231120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 230884..231120 +
1622930705.3988593-UTR-C-linearis_contig9:231594..2316771622930705.3988593-UTR-C-linearis_contig9:231594..231677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 231595..231677 +
1690881206.6547952-UTR-C-linearis_contig9:231594..2316771690881206.6547952-UTR-C-linearis_contig9:231594..231677Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 231595..231677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.3823748-CDS-C-linearis_contig9:231120..2315941622930705.3823748-CDS-C-linearis_contig9:231120..231594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 231121..231594 +
1690881206.642012-CDS-C-linearis_contig9:231120..2315941690881206.642012-CDS-C-linearis_contig9:231120..231594Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 231121..231594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16463.1

>prot_C-linearis_contig9.16463.1 ID=prot_C-linearis_contig9.16463.1|Name=mRNA_C-linearis_contig9.16463.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=158bp
MYTIHKTRRLQNTGGSTYSIWKRRQQGVAAYTSSNLKTTGRARETAHKNS
IRPLWSGACPPPSPSPRGESTGRSTPATVLLLSSPRKPVPTLVSEPPLSD
FFVADCSRASGHLWQIPKRKRRGQIYLTLSVQGMDRVCSVSRSKSRKVRA
LYVNVGN*
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mRNA from alignment at C-linearis_contig9:230884..231677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16463.1 ID=mRNA_C-linearis_contig9.16463.1|Name=mRNA_C-linearis_contig9.16463.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=794bp|location=Sequence derived from alignment at C-linearis_contig9:230884..231677+ (Chordaria linearis ClinC8C monoicous)
TTTATCGCTTTCACCTGCAAAGTCGCAAAAGAAACACTTTTGCTTGGAAT
CGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCATGTATTTC
GATAATAATGTACTTCCTAACCATGTATATCTAGATAGGAAGTCGCAGGT
GTGCTTGCTCTGCATTGGATCTTGGCCCCATAAAAGACATACACCTAAAC
AAATAAGAAATAAAGGAGCAAAACACCCACAGCCCACATGTATACTATTC
ACAAAACGCGACGACTACAAAACACTGGCGGATCAACTTATAGTATTTGG
AAAAGGCGTCAGCAAGGCGTGGCGGCGTACACATCGTCAAACCTAAAAAC
GACCGGTCGAGCCCGCGAGACGGCTCATAAGAATTCAATTCGACCACTGT
GGAGCGGAGCGTGCCCCCCTCCTTCACCATCGCCTCGAGGAGAATCAACC
GGCCGATCTACGCCAGCTACCGTCCTCCTGCTCTCGTCCCCCCGAAAGCC
AGTCCCTACCCTCGTCTCAGAACCACCCCTCTCCGACTTTTTCGTAGCGG
ATTGCTCGCGTGCAAGTGGGCACCTGTGGCAGATTCCGAAGCGTAAGAGA
AGAGGGCAGATATATCTGACGTTATCTGTGCAAGGTATGGATCGGGTGTG
TAGTGTCTCTCGTTCAAAGTCACGGAAAGTCAGGGCACTGTACGTGAATG
TTGGCAATTAACTTGACTTTCTGTGCACCACGACCGCTAAACGGAAGGTA
AGGTATGCCGGGAAGTCGTGCAGAAGGAACTGCGCCCACAGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig9:230884..231677+

>mRNA_C-linearis_contig9.16463.1 ID=mRNA_C-linearis_contig9.16463.1|Name=mRNA_C-linearis_contig9.16463.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at C-linearis_contig9:230884..231677+ (Chordaria linearis ClinC8C monoicous)
ATGTATACTATTCACAAAACGCGACGACTACAAAACACTGGCGGATCAAC
TTATAGTATTTGGAAAAGGCGTCAGCAAGGCGTGGCGGCGTACACATCGT
CAAACCTAAAAACGACCGGTCGAGCCCGCGAGACGGCTCATAAGAATTCA
ATTCGACCACTGTGGAGCGGAGCGTGCCCCCCTCCTTCACCATCGCCTCG
AGGAGAATCAACCGGCCGATCTACGCCAGCTACCGTCCTCCTGCTCTCGT
CCCCCCGAAAGCCAGTCCCTACCCTCGTCTCAGAACCACCCCTCTCCGAC
TTTTTCGTAGCGGATTGCTCGCGTGCAAGTGGGCACCTGTGGCAGATTCC
GAAGCGTAAGAGAAGAGGGCAGATATATCTGACGTTATCTGTGCAAGGTA
TGGATCGGGTGTGTAGTGTCTCTCGTTCAAAGTCACGGAAAGTCAGGGCA
CTGTACGTGAATGTTGGCAATTAAATGTATACTATTCACAAAACGCGACG
ACTACAAAACACTGGCGGATCAACTTATAGTATTTGGAAAAGGCGTCAGC
AAGGCGTGGCGGCGTACACATCGTCAAACCTAAAAACGACCGGTCGAGCC
CGCGAGACGGCTCATAAGAATTCAATTCGACCACTGTGGAGCGGAGCGTG
CCCCCCTCCTTCACCATCGCCTCGAGGAGAATCAACCGGCCGATCTACGC
CAGCTACCGTCCTCCTGCTCTCGTCCCCCCGAAAGCCAGTCCCTACCCTC
GTCTCAGAACCACCCCTCTCCGACTTTTTCGTAGCGGATTGCTCGCGTGC
AAGTGGGCACCTGTGGCAGATTCCGAAGCGTAAGAGAAGAGGGCAGATAT
ATCTGACGTTATCTGTGCAAGGTATGGATCGGGTGTGTAGTGTCTCTCGT
TCAAAGTCACGGAAAGTCAGGGCACTGTACGTGAATGTTGGCAATTAA
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