mRNA_C-linearis_contig9.16700.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig9.16700.1 vs. uniprot
Match: A0A6H5KJQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ3_9PHAE) HSP 1 Score: 663 bits (1710), Expect = 1.170e-208 Identity = 757/1361 (55.62%), Postives = 837/1361 (61.50%), Query Frame = 2
Query: 155 MAEPDAEALRKELTMVKDKAKAFIGRLNEEKTALAKELKEKSTVLAGXXXXXXXXXXXXXXXXXXXISALEDQVKDRDSRLLRAGELLQSELASKDRELGAALAEAKALKERAESAXXXXXXXXSDIPKANGSSTAGESVEXXXXXXXXXXXXXXXAKSLKGELQGVREALEASEASRPKAENLLAETKLASEAAACERVAAADGERDRACARAEALEASLAXXXXXXXXXXXXXXXXXXXLEDVKREAXXXXXXXXXXXXXXXXXXXXXEQAAMSTTNDLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAESSATELXXXXXXXXXXXXXXXXXXXXXXXXTPESALREEELRAQVASMESELGGLKEELSVARQEKEAAVAEAXXXXXXXXXXXXXXXXXXXXXXXXAMNNEDKSGIEKPVEEGEGSGASTHPAIESTTDDAAAEAKAEAAALANRIAALEEGLEASKLALRQAEEAKEVAVASASSSAQEEIQTIQERLSTAEQETAELSQELAREKEAAXXXXXXXXA-----------------------------------------------------------------------------------------EAEEAQSAXXXXXXXXXXXXXXXXX----------------ELSSRLMGALEEREEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRQAKLDLASVLEESAAAGKKASEVKTMLEAAQAEHQETKMGLESEEAANAGLKAAVMEANETVAKRVDGLRDAIEKADKERDAAAADASSSKTQLQALQAQVASLLRENAGAKTEAGLRAGDLQQRLSAAQEELARERDAFAERKKEMQAYADAMAKEGEALRTATQGAQAVAARATAAEREASAAVAQIRQQGEAATATLTQALEERKMEANHAMSALEERNDALESETLRLQQLMTDETDEREEKAHGLAQSLASSVEEANIHKKKRLAARSEMISLAKTLEAERDGRKTVGHALQYGLVPKAIDQAAVLERVVMTAERSVHRLSKAGGVRLATNLQAAHASLARLRGRVAGADDPQVAWHHQQSSDLSRVALMGGAGSSSSMGIAGVGAEDASSSVISDRPDSPLGSAASGDQGGGPGSWRGTGRLGDQAARDSVHLERVRRLESEMERVSSGLALVLQSVEQLSELVEVQASLCGGLSVLCCTSRRTGGISSRGGRRTGGG-------PAYSTLEMGSRRLVEGGETD 3901
MAEPDA ALRKEL MVKDKAKA+I +LNEEK ALAKEL++KS VLA XXXXXXXXXXXXXXXXXXX EDQVKDRD RLLRA ELLQ++LA+KD EL AA AEAK L+++AESA XXX P+AN S +S XX KSLKGELQ V EALEA EASR + E LLAETK A+ AA ERD A ARAE L+ASL EAXXXXXXXXXXXXXXXXXXXXX ST L+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AES A E+ XXXX E+A REE LRAQV ME+E+ L+EEL VA +EKE A A A + V+ +G D K E AL R+AALEE L ASKLAL EE++ I+ RL AEQETA+LS EL+ K XXXXXXXX + E A+ AXXXXXXXXXXXXXXXXX ELSSRLMGALEER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX ALRQAKLDLASVLE+S A G K SE ++ GLK AV+E NETV+KRVD LRDAIEK + ERDAAAAD ++SKTQLQALQAQVASLL+ENAGAKTEAGLR GDLQQRL+AAQ+EL RE++A AERKKEMQAYA+AMA+EGE LRTAT+ AQA+AARATAAE E+ + VA +R++GEA ++L QALE++ EA+ A++ALEERN ALESET RLQ LM ET EREEKA GL QSL + +EEAN+HKKKRL ARS MISL KTLEAERDG K VGHALQY LVPKAIDQA VLERVVMTAE SVHRLS+AGGVRLATNLQAA +SLARLRGRVAGAD+P VAWH +QSSDLSRVALMGG+G +SSM G G EDA+SSVISDR DSP GSAASGDQGGGPG WRG+ RLG+Q +DS++LERVRRLESEMERVSSGLALV QSVEQLSELVEVQASLCGGLSVLCC+SR PAYSTLEMGSRRLVEGGE++
Sbjct: 1 MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXXEDQVKDRDGRLLRAEELLQAKLAAKDEELQAAQAEAKTLRDQAESAAXXXGH----XPQANRGSXGADSPSEEAVAXXRAAAEEEM-KSLKGELQRVSEALEACEASRTETETLLAETKQAAAXXXXXXXXAAR-ERDDALARAETLQASL--------------------------EAXXXXXXXXXXXXXXXXXXXXXXXXX-STAEGLRAELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQESTIEELRSKL----------AESEAAEMEESGDKAEXXXXALSQAKAGRAEAESEAARREEALRAQVVGMEAEVASLREELRVAEEEKEIAAAAATAAEKDTDGTGSSAERSCAASGELPV---------AAVDSTDGXXXXXXXXXXXXXDT-----KEEVDALVGRVAALEEELAASKLALHXXXXXXXXXXXXXXXXX-EEMEAIRGRLRVAEQETADLSAELSSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAAKDQETAEEAXXXXXXXXXXXXXXXXXXRETEKALEDSDKQAEELSSRLMGALEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVEAVKALEDALTQREQEAERLTEEVAGLRKETSLVKAELEARGE-ALRQAKLDLASVLEDSTATGAKLSEARSSXXXXXXXXXXXXXXXXXXXXXXXGLKXAVIETNETVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLAAAQDELGREKEAIAERKKEMQAYAEAMAREGETLRTATKEAQAIAARATAAESESKSIVALVRREGEATASSLRQALEKQAAEASRAVAALEERNAALESETSRLQHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQRQSSDLSRVALMGGSGGASSM--IGGGPEDANSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRXXXXXXXXXXXXXXXXXXXXXXXPAYSTLEMGSRRLVEGGESE 1300
BLAST of mRNA_C-linearis_contig9.16700.1 vs. uniprot
Match: D8LSM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM5_ECTSI) HSP 1 Score: 546 bits (1407), Expect = 4.440e-165 Identity = 684/1332 (51.35%), Postives = 753/1332 (56.53%), Query Frame = 2
Query: 197 MVKDKAKAFIGRLNEEKTALAKELKEKSTVLAGXXXXXXXXXXXXXXXXXXXISALEDQVKDRDSRLLRAGELLQSELASKDRELGAALAEAKALKERAESAXXXXXXXXSDIPKANGSSTAGESVEXXXXXXXXXXXXXXXAKSLKGELQGVREALEASEASRPKAENLLAETKLASEAAACERVAAADGERDRACARAEALEASL-AXXXXXXXXXXXXXXXXXXXLEDVKREAXXXXXXXXXXXXXXXXXXXXXEQAAMSTTND-------------------LQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAESSATELXXXXXXXXXXXXXXXXXXXXXXXXTPESALREEELRAQVASMESELGGLKEELSVARQEKEAAVAEAXXXXXXXXXXXXXXXXXXXXXXXXAMNNEDKSGIEKPVEEGEGSGASTHPAIESTTDDAAAEAKAEAAALANRIAALEEGLEASKLALRQAEEAKEVAVASASSSAQEEIQTIQERLSTAEQETAELSQELAREKEAAXXXXXXXXAE---------------------------------------------------AEEAQSAXXXXXXXXXXXXXXXXX-------------------ELSSRLMGALEEREEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRQAKLDLASVLEESAAAGKKASEVKTMLEAAQAEHQETKMGLESEEAANAGLKAAVMEANETVAKRVDGLRDAIEKADKERDAAAADASSSKTQLQALQAQVASLLRENAGAKTEAGLRAGDLQQRLSAAQEELARERDAFAERKKEMQAYADAMAKEGEALRTATQGAQAVAARATAAEREASAAVAQIRQQGEAATATLTQALEERKMEANHAMSALEERNDALESETLRLQQLMTDETDEREEKAHGLAQSLASSVEEANIHKKKRLAARSEMISLAKTLEAERDGRKTVGHALQYGLVPKAIDQAAVLERVVMTAERSVHRLSKAGGVRLATNLQAAHASLARLRGRVAGADDPQVAWHHQQSSDLSRVALMGGAGSSSSMGIAGVGAEDASSSVISDRPDSPLGSAASGDQGGGPGSWRGTGRLGDQAARDSVHLERVRRLESEMERVSSGLALVLQSVEQLSELVEVQASLCGGLSVLCCTSRRTG---GISSRGGRRTGG----GPAYSTLEMGSRRLVEGGETD 3901
MVKDKAK +I +LNEEK ALAKEL++KS VLAG XXXXXXXXXXXXXXXXXX DQVKDRD RLLRA ELLQ++LA+KD EL AA AEAK L+++AESA P+ANG S AG KSLKGELQ V EALEA EASR + E LLAETK A+E A RV AA G RD A ARAE L+ASL AXXXXXXXXXXXXXXXXXXXLE+V+R + EQAA+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX AES XXXXXXXXXXXXXXXXXXXXXXXX E+A REE LRAQVA ME E+ L+EEL VA + XXXXXXXXXXXXXXXXXXXXXXXX E A A +EE++ I+ERL AEQETA+LS EL+ EKE XXXXXXXX A++ ++A XXXXXXXXXXXXXXXX ELSSRLMGALEEREE G ALRQAKLDLASVL RDAAAAD +SSKTQLQALQAQVASLL+ENAGAKTEAGLR GDLQQRL+AAQ+EL RER+A AERKKEMQAYA +AARATAAE E+ + VA +R+ GEAA ++L QALE++ EA+ ++ALEERN ALESETLRL+ LM ET EREEKA GL QSL + +EEAN+HKKKRL ARS MISL KTLEAERDG K VGHALQY LVPKAIDQA VLERVVMTAE SVHRLS+AGGVRLATNLQAA +SLARLRGRVAGAD+P VAWH QQSSDLSRVALMGG+GS S G+ G EDASSSVISDR DSP GSAASGDQGGGPG WRG+ RLG+Q +DS++LERVRRLESEMERVSSGLALV QSVEQLSELVEVQASLCGGLSVLCC+SRR G ++ GGRR GPAYSTLEMGSRRLVEGGE++
Sbjct: 1 MVKDKAKTYISKLNEEKAALAKELQDKSNVLAGVXXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHD----PQANGGS-AGADSPSEEAVAAARAAAEEEIKSLKGELQRVSEALEACEASRTETETLLAETKQAAEEATG-RVTAAAGGRDDALARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLER---------------EQAAVRALEERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAAADASDAAXXXXXXXXXXXXXXXXXXSTIEELRSKLAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARREEALRAQVAGMEVEVASLREELRVAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAATAGT----EEEMEAIRERLRVAEQETADLSAELSSEKEXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEATQAAKDQETAEXXXXXXXXXXXXXXXXXXARRETEKALEDSDKQAEELSSRLMGALEEREE-GRRREAAVAKEAGRLREELAGATGELERARAEVKGRDAAADESASVWASRVKELEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDAAAADVASSKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYAXXXXXXXXXXXXXXXXXXXIAARATAAESESKSCVALVRRDGEAAASSLRQALEKQAAEASRTVAALEERNAALESETLRLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGS--GMIGGAPEDASSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATTSGGRRIRAXXXXGPAYSTLEMGSRRLVEGGESE 1304 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig9.16700.1 >prot_C-linearis_contig9.16700.1 ID=prot_C-linearis_contig9.16700.1|Name=mRNA_C-linearis_contig9.16700.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1271bp MAEPDAEALRKELTMVKDKAKAFIGRLNEEKTALAKELKEKSTVLAGVRDback to top mRNA from alignment at C-linearis_contig9:3085837..3103652+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig9.16700.1 ID=mRNA_C-linearis_contig9.16700.1|Name=mRNA_C-linearis_contig9.16700.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17816bp|location=Sequence derived from alignment at C-linearis_contig9:3085837..3103652+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig9:3085837..3103652+ >mRNA_C-linearis_contig9.16700.1 ID=mRNA_C-linearis_contig9.16700.1|Name=mRNA_C-linearis_contig9.16700.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7626bp|location=Sequence derived from alignment at C-linearis_contig9:3085837..3103652+ (Chordaria linearis ClinC8C monoicous)back to top |