mRNA_C-linearis_contig89.16443.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig89.16443.1
Unique NamemRNA_C-linearis_contig89.16443.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:686471..687532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size678
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16443.1prot_C-linearis_contig89.16443.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig89 686477..687532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.6369352-UTR-C-linearis_contig89:686470..6864761622930689.6369352-UTR-C-linearis_contig89:686470..686476Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 686471..686476 +
1690881198.3997128-UTR-C-linearis_contig89:686470..6864761690881198.3997128-UTR-C-linearis_contig89:686470..686476Chordaria linearis ClinC8C monoicousUTRC-linearis_contig89 686471..686476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.6507683-CDS-C-linearis_contig89:686476..6865481622930689.6507683-CDS-C-linearis_contig89:686476..686548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 686477..686548 +
1690881198.4088843-CDS-C-linearis_contig89:686476..6865481690881198.4088843-CDS-C-linearis_contig89:686476..686548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 686477..686548 +
1622930689.6842678-CDS-C-linearis_contig89:686926..6875321622930689.6842678-CDS-C-linearis_contig89:686926..687532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 686927..687532 +
1690881198.4200191-CDS-C-linearis_contig89:686926..6875321690881198.4200191-CDS-C-linearis_contig89:686926..687532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig89 686927..687532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig89.16443.1

>prot_C-linearis_contig89.16443.1 ID=prot_C-linearis_contig89.16443.1|Name=mRNA_C-linearis_contig89.16443.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=226bp
MRRRQRAEERARNRIKRRQNVTLQDDSSEGSLPESNASVSSEDTLPANTG
SKPKPTTSSSSPKLSGSASGSAGSDSISDDSASYSSASSSGTGASTSTGA
SSSSSESASGSDESGSGSAEETMSTGTAPSTAESGGGKSGESSGRESRSQ
TESSSLSPRSDSYSRASNSVSANEKTNKGKKNSSDRGESESDGGDEGGSS
SGSSADSRDAKKQATGKKTEKKKTK*
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mRNA from alignment at C-linearis_contig89:686471..687532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig89.16443.1 ID=mRNA_C-linearis_contig89.16443.1|Name=mRNA_C-linearis_contig89.16443.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1062bp|location=Sequence derived from alignment at C-linearis_contig89:686471..687532+ (Chordaria linearis ClinC8C monoicous)
GACAAGATGAGGCGGAGACAACGAGCGGAAGAGCGCGCTCGCAATCGCAT
CAAGAGACGGCAAAACGTCACCCTTCAGGTGAAGAAATGTTTGTGGGCGA
TGAGATTCGTCGTGTGGGTGGTGGTCTCGCAGTTAGAGAGGGAGTTGGTT
GACAGGTACCATGTCGAGGCTGTTTCGTACACTCTTCCTCCGCGACTTGG
CCCCGGAGTCGACCTTACTCTCTGAAAAACATACGGGTCGCGGACTGACG
AACGACATTTCGTGCGAACTTTGACCGTGCCCGTCCAAAGCCATGCATGT
GCGGACATTTTGCGAATTTGCCGCCATCCACCCGCGCAAATGATAAAAGA
TTGTGCTATGATACATAGACATATCAAACGGCACACTGTGTACCATCTCA
TAGAAGTCGCATCCATCTGTCCCTTCCTTAACGCTTAACACTTCCTCCGC
CAACAGGACGACTCATCGGAAGGCTCTTTGCCCGAAAGCAATGCTTCCGT
GTCGTCGGAGGACACCCTCCCGGCAAACACGGGCTCCAAGCCGAAACCCA
CAACCTCTTCATCGTCACCAAAACTGTCTGGCTCTGCCTCCGGGTCCGCC
GGCTCGGACTCTATCAGCGACGACAGCGCTAGCTACAGCAGCGCCTCATC
ATCGGGCACAGGGGCTTCCACCTCGACCGGCGCATCATCATCGTCATCCG
AGTCAGCAAGCGGGTCCGACGAGAGCGGGTCTGGAAGTGCCGAGGAAACC
ATGTCTACTGGAACAGCCCCGTCAACGGCGGAATCTGGTGGGGGAAAGTC
GGGGGAATCTTCGGGACGAGAGTCGCGATCACAGACGGAATCGTCTTCCT
TGTCGCCGAGGTCGGACTCGTACTCGCGGGCCAGCAACAGCGTCAGCGCC
AATGAAAAGACAAACAAGGGTAAGAAAAATTCTTCCGACCGGGGCGAATC
TGAATCGGATGGAGGTGATGAGGGAGGGTCGTCTTCCGGGTCGTCAGCGG
ATTCGCGGGACGCAAAAAAACAAGCTACTGGGAAAAAGACAGAGAAGAAG
AAAACAAAATAG
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Coding sequence (CDS) from alignment at C-linearis_contig89:686471..687532+

>mRNA_C-linearis_contig89.16443.1 ID=mRNA_C-linearis_contig89.16443.1|Name=mRNA_C-linearis_contig89.16443.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at C-linearis_contig89:686471..687532+ (Chordaria linearis ClinC8C monoicous)
ATGAGGCGGAGACAACGAGCGGAAGAGCGCGCTCGCAATCGCATCAAGAG
ACGGCAAAACGTCACCCTTCAGATGAGGCGGAGACAACGAGCGGAAGAGC
GCGCTCGCAATCGCATCAAGAGACGGCAAAACGTCACCCTTCAGGACGAC
TCATCGGAAGGCTCTTTGCCCGAAAGCAATGCTTCCGTGTCGTCGGAGGA
CACCCTCCCGGCAAACACGGGCTCCAAGCCGAAACCCACAACCTCTTCAT
CGTCACCAAAACTGTCTGGCTCTGCCTCCGGGTCCGCCGGCTCGGACTCT
ATCAGCGACGACAGCGCTAGCTACAGCAGCGCCTCATCATCGGGCACAGG
GGCTTCCACCTCGACCGGCGCATCATCATCGTCATCCGAGTCAGCAAGCG
GGTCCGACGAGAGCGGGTCTGGAAGTGCCGAGGAAACCATGTCTACTGGA
ACAGCCCCGTCAACGGCGGAATCTGGTGGGGGAAAGTCGGGGGAATCTTC
GGGACGAGAGTCGCGATCACAGACGGAATCGTCTTCCTTGTCGCCGAGGT
CGGACTCGTACTCGCGGGCCAGCAACAGCGTCAGCGCCAATGAAAAGACA
AACAAGGGTAAGAAAAATTCTTCCGACCGGGGCGAATCTGAATCGGATGG
AGGTGATGAGGGAGGGTCGTCTTCCGGGTCGTCAGCGGATTCGCGGGACG
CAAAAAAACAAGCTACTGGGAAAAAGACAGAGAAGAAGAAAACAAAATAG
GACGACTCATCGGAAGGCTCTTTGCCCGAAAGCAATGCTTCCGTGTCGTC
GGAGGACACCCTCCCGGCAAACACGGGCTCCAAGCCGAAACCCACAACCT
CTTCATCGTCACCAAAACTGTCTGGCTCTGCCTCCGGGTCCGCCGGCTCG
GACTCTATCAGCGACGACAGCGCTAGCTACAGCAGCGCCTCATCATCGGG
CACAGGGGCTTCCACCTCGACCGGCGCATCATCATCGTCATCCGAGTCAG
CAAGCGGGTCCGACGAGAGCGGGTCTGGAAGTGCCGAGGAAACCATGTCT
ACTGGAACAGCCCCGTCAACGGCGGAATCTGGTGGGGGAAAGTCGGGGGA
ATCTTCGGGACGAGAGTCGCGATCACAGACGGAATCGTCTTCCTTGTCGC
CGAGGTCGGACTCGTACTCGCGGGCCAGCAACAGCGTCAGCGCCAATGAA
AAGACAAACAAGGGTAAGAAAAATTCTTCCGACCGGGGCGAATCTGAATC
GGATGGAGGTGATGAGGGAGGGTCGTCTTCCGGGTCGTCAGCGGATTCGC
GGGACGCAAAAAAACAAGCTACTGGGAAAAAGACAGAGAAGAAGAAAACA
AAATAG
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