mRNA_C-linearis_contig86.16238.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16238.1
Unique NamemRNA_C-linearis_contig86.16238.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A6H5KXP9_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP9_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 2.660e-79
Identity = 130/151 (86.09%), Postives = 137/151 (90.73%), Query Frame = 3 
Query: 1236 SWYKNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLRRLPGQRDSPGGIARFVQCARGD 1688
            S YKNDTISMADLALTLVST HPR MPVFLARVQAIQKKRKQ+PLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAV   DFARAAKVISGKELSPECVWLVFK+FD GADG+L+HDELIEAT  RLR LPG+R+ P  +ARFVQC RGD
Sbjct:   78 SRYKNDTISMADLALTLVSTSHPRKMPVFLARVQAIQKKRKQIPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTATDFARAAKVISGKELSPECVWLVFKMFDSGADGRLEHDELIEATHHRLRSLPGRREFPNSVARFVQCVRGD 228
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BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A6H5L3M7_9PHAE (EF-hand domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M7_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.730e-74
Identity = 125/151 (82.78%), Postives = 139/151 (92.05%), Query Frame = 3 
Query:  312 AASAIVCARQQAGER-EED-VCLCKGKISEKDSLQDYARRLQRLRSLRDIFEEYATVNADDVGQLMTCGDFLRAMLCYKYVRVDDRELKRRCARYLNPLLGDDHGLISFDEFCFLLSLVSIPAGLLDVAFAAVDADGSGTIDVGELDRLVK 758
            AA+A++CA+Q+   R EED VCLCKGK S  DSL+DYARRLQRLRSLRDIFEEYATV+ADDVG+LMTCGDFLRAMLCYKYVRVD +ELKRRCARY+NPLLGDDH LISFDEFCFLL+L+SIPAGLLDVAFAA DADGSGTID+ EL+RLVK
Sbjct:    5 AAAALLCAQQELQPRWEEDCVCLCKGKTSATDSLEDYARRLQRLRSLRDIFEEYATVDADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHSLISFDEFCFLLNLLSIPAGLLDVAFAAADADGSGTIDMHELERLVK 155
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: D7G3D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D0_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 6.510e-49
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 3 
Query:  330 CARQQAGER--EEDVCLCKGKISEKDSLQDYARRLQRLRSLRDIFEEYATVNADDVGQLMTCGDFLRAMLCYKYVRVDDRELKRRCARYLNPLLGDDHGLISFDE 638
            CA+Q+   R  E+ VCLCKGK S  DSL+DYARRLQRLRSLRDIFEEYATVNADDVG+LMTCGDFLRAMLCYKYVRVD +ELKRRCARY+NPLLGDDHGLISFDE
Sbjct:   89 CAQQELQPRWEEDGVCLCKGKASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE 193
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BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: L8H3D2_ACACA (Calcium binding atopyrelated autoantigen 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3D2_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 2.720e-12
Identity = 95/422 (22.51%), Postives = 162/422 (38.39%), Query Frame = 3 
Query:  414 YARRLQRLRSLRDIFEEYATVNADDVGQLMTCGDFLRAMLCYKYVRVDDRELKRRCARYLNPLLGDDHGLISFDEFCFLLSLVSIPAGLLDVAFAAVDADGSGTIDVGELDRLVKRLAPSESGGGNSTAGESDGDSNGNGEEQRLTGHKRLEEAWFPRKARDDESGXXXXXXXXXDGDKGVPREKFLAFVRDLRMDVKTVECRLYSRSIRVEEEDEIKPPTVRRGWREWFSSSVLGRGGTSGGRSSGSEAGDGXXXXXXXXXXXXXXXXXXXXXSWYKNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLRR-LPGQRDSPGGIARFVQC 1676
            Y  +++   +   IF  +ATV  +     MT  DF  A+L   +    ++   +R   ++     D   LISF E+ F  +L+S+P   L VAF   D DGSG I   E  R V R+   ES  G+                Q+ T  K +E++                     DG K +   +F  F++ L   V  +E   Y                                             G+G                            I+     ++++    P+D+P FL RV+++  ++ ++   D +  +  L+    ++  A+ +Y++          DF RA K ISG +L P  + +++ + D+  +GKLDH+EL+E   +R+ + +   RD   G+ARFV C
Sbjct:   48 YNDKIKNWSTPEKIFNVFATVRKNGES-FMTVEDFCDAILPADHRPPSEKGKIKRIPDFIRFADLDGDELISFGEYSFFTTLLSLPEEHLKVAFQMFDLDGSGAISKQEF-RKVLRVLRKESPLGS----------------QQTTHKKEVEKSGI------------YAHFFGLDGKKELTYTEFENFIKSLHQGVLQLEFDRYD------------------------------------------SKGEGK---------------------------ITARAFGMSVIGYVDPKDLPSFLTRVESLDNRKGELSFEDFVNFNRALKK-LPEIGLAVKLYAQG---------DFGRAVKAISGVDLKPVQIDVIYHVLDKDGNGKLDHNELVEVMAKRVEKGMAHHRDV--GVARFVNC 358
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A0P1AS55_PLAHL (Calciumbinding atopy-related autoantigen n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AS55_PLAHL)

HSP 1 Score: 73.9 bits (180), Expect = 3.350e-10
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 3 
Query: 1245 KNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLRRLPGQRDSP--GGIARFVQCAR 1682
            K  ++S+ D ALTL+S   P  +P +L RVQA+ +    V   D    H  ++ +  D++ AL +         +  ADF RA +V SG ELS   V L F+IFD  A G L+  EL++   E   ++  ++DS     + +F  C R
Sbjct:  305 KQQSMSVHDFALTLISCFDPEKLPPYLERVQALTESDGAVTWDDFFTFHFNVQSNLTDIKAALELIGVDE----IKEADFTRAVRVASGTELSSPVVRLAFRIFDENASGTLNQSELLKVL-EMRNKVQLKQDSKLESRLKKFWHCVR 447
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A2D4BZW7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZW7_PYTIN)

HSP 1 Score: 73.9 bits (180), Expect = 3.460e-10
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 3 
Query: 1257 ISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLRRLPGQRDSPGGIARFVQCAR 1682
            IS+ D A+TLVS   P  +  +L RV+A+    + V   D    H  ++++  D+  A  +         +  ADF RAA+V+SG ELS   V L F++FD   +G LD  EL++    R      QR     + RFV C +
Sbjct:  320 ISVHDFAITLVSGFDPDRLAPYLERVEALNASEELVTWEDFYKFHANVQNNLADIXLAFDLTHAEE----ITEADFIRAARVVSGVELSFPVVQLAFRVFDSNENGTLDQSELLKVLETRSTIELTQRPPENKLQRFVSCVK 457
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A329SJ15_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SJ15_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.510e-10
Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 3 
Query: 1245 KNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLR-RLPGQRDSPGGIARFVQCAR 1682
            K  T+S+ D ALTL+S   P  +P +L RVQ +      V   +    H  ++ +  D++ A  +    +    +  ADF RAA V+SG ELS   V L F+IFD  A+G LDH EL +    R   +L  + DS   + +   C +
Sbjct:  318 KQQTMSVHDFALTLISCFDPEKLPPYLDRVQELNASDGVVMWDEFFAFHFNVQCNLPDIKLAFEL----TGADEITEADFVRAAHVVSGVELSSPVVQLAFRIFDENANGTLDHSELFKILEMRNTVQLKQEFDSGSRLEKLWHCVK 460
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A5D6XI39_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI39_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.510e-10
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 3 
Query: 1251 DTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLRRLPGQRDSPGG-IARFVQCAR 1682
            + +S+ D A+TLVS   P  +  +L R+QA+   ++ V   D    H  ++ + +D++ A  +   A     +  ADF RAA+V+SG ELS   V L F++FD   +G LD  EL++   E  R +  ++  P   + RF  C R
Sbjct:  291 EVVSVHDFAITLVSCFDPERLAPYLERLQALNASQELVTWDDFYKFHFNVQSNLEDIKLAFDLIGAAE----ITEADFIRAARVVSGVELSFPVVQLAFRVFDGNDNGTLDQTELLKVL-EMRRDIELEKKQPATYVKRFWSCVR 430
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: A0A484EGG9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG9_BRELC)

HSP 1 Score: 72.4 bits (176), Expect = 9.300e-10
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 3 
Query: 1245 KNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRERLR-RLPGQRDSPGGIARFVQCAR-GDSVK 1697
            K  T+S+ D ALTL+S   P+ +P +L RVQA+      V   +    H  ++ +  D++ A  +    +    +  A+F RAA+++SG ELS   V L F+IFD   +G LD  EL E  + R    L  +      + +  QC + GD  +
Sbjct:  276 KQQTVSVHDFALTLISGHDPKKLPPYLDRVQALNACDDVVTWDEFCTFHFNVQHNLPDIKLAFEL----TGADEITEAEFIRAARIVSGVELSSPVVELAFRIFDENGNGTLDRSELFEGLKMRNTVELKQKSSGRSQLGKLWQCVKAGDKSR 424
[Close]
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Match: G4ZSQ1_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZSQ1_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 2.000e-9
Identity = 45/124 (36.29%), Postives = 62/124 (50.00%), Query Frame = 3 
Query: 1245 KNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPECVWLVFKIFDRGADGKLDHDELIEATRER 1616
            K  T+S+ D ALTLVS   P  +  +L RVQ +      +   +    H  ++ H  D++ A  +    +    V  ADF RAA V+SG ELS   V L F+IFD  A+G LD  EL +    R
Sbjct:  261 KEQTMSVHDFALTLVSCFDPDKLSPYLERVQELNASEGVITWEEFFAFHFNVQSHLPDIKLAFEL----TGADEVTEADFIRAAHVVSGVELSSPVVQLAFRIFDDDANGTLDQSELFKVLEMR 380
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KXP9_9PHAE2.660e-7986.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L3M7_9PHAE1.730e-7482.78EF-hand domain-containing protein (Fragment) n=1 T... [more]
D7G3D0_ECTSI6.510e-4983.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L8H3D2_ACACA2.720e-1222.51Calcium binding atopyrelated autoantigen 1, putati... [more]
A0A0P1AS55_PLAHL3.350e-1033.11Calciumbinding atopy-related autoantigen n=1 Tax=P... [more]
A0A2D4BZW7_PYTIN3.460e-1033.10Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A329SJ15_9STRA3.510e-1033.33Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A5D6XI39_9STRA5.510e-1032.41EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A484EGG9_BRELC9.300e-1031.37Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4ZSQ1_PHYSP2.000e-936.29Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:534266..539795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue5.7e-18
Seed eggNOG ortholog65071.PYU1_T014426
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Source PGD
EggNOG OGs1MG2K@121069,KOG2643@1,KOG2643@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons10
Model size1968
Cds size1668
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16238.1prot_C-linearis_contig86.16238.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 534298..539511 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.2267356-UTR-C-linearis_contig86:534265..5342971622930662.2267356-UTR-C-linearis_contig86:534265..534297Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 534266..534297 +
1690881183.909491-UTR-C-linearis_contig86:534265..5342971690881183.909491-UTR-C-linearis_contig86:534265..534297Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 534266..534297 +
1622930662.3737063-UTR-C-linearis_contig86:539511..5395501622930662.3737063-UTR-C-linearis_contig86:539511..539550Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 539512..539550 +
1690881184.013727-UTR-C-linearis_contig86:539511..5395501690881184.013727-UTR-C-linearis_contig86:539511..539550Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 539512..539550 +
1622930662.3908823-UTR-C-linearis_contig86:539566..5397951622930662.3908823-UTR-C-linearis_contig86:539566..539795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 539567..539795 +
1690881184.0231395-UTR-C-linearis_contig86:539566..5397951690881184.0231395-UTR-C-linearis_contig86:539566..539795Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 539567..539795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930662.2391624-CDS-C-linearis_contig86:534297..5343641622930662.2391624-CDS-C-linearis_contig86:534297..534364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 534298..534364 +
1690881183.923479-CDS-C-linearis_contig86:534297..5343641690881183.923479-CDS-C-linearis_contig86:534297..534364Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 534298..534364 +
1622930662.2553132-CDS-C-linearis_contig86:535259..5355631622930662.2553132-CDS-C-linearis_contig86:535259..535563Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 535260..535563 +
1690881183.932709-CDS-C-linearis_contig86:535259..5355631690881183.932709-CDS-C-linearis_contig86:535259..535563Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 535260..535563 +
1622930662.266905-CDS-C-linearis_contig86:535856..5359831622930662.266905-CDS-C-linearis_contig86:535856..535983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 535857..535983 +
1690881183.9424376-CDS-C-linearis_contig86:535856..5359831690881183.9424376-CDS-C-linearis_contig86:535856..535983Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 535857..535983 +
1622930662.281073-CDS-C-linearis_contig86:536517..5366251622930662.281073-CDS-C-linearis_contig86:536517..536625Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 536518..536625 +
1690881183.9516132-CDS-C-linearis_contig86:536517..5366251690881183.9516132-CDS-C-linearis_contig86:536517..536625Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 536518..536625 +
1622930662.2929807-CDS-C-linearis_contig86:537007..5371271622930662.2929807-CDS-C-linearis_contig86:537007..537127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 537008..537127 +
1690881183.9610107-CDS-C-linearis_contig86:537007..5371271690881183.9610107-CDS-C-linearis_contig86:537007..537127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 537008..537127 +
1622930662.3065057-CDS-C-linearis_contig86:537481..5377621622930662.3065057-CDS-C-linearis_contig86:537481..537762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 537482..537762 +
1690881183.9693742-CDS-C-linearis_contig86:537481..5377621690881183.9693742-CDS-C-linearis_contig86:537481..537762Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 537482..537762 +
1622930662.3236492-CDS-C-linearis_contig86:538188..5385101622930662.3236492-CDS-C-linearis_contig86:538188..538510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 538189..538510 +
1690881183.9791784-CDS-C-linearis_contig86:538188..5385101690881183.9791784-CDS-C-linearis_contig86:538188..538510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 538189..538510 +
1622930662.3402529-CDS-C-linearis_contig86:538900..5390141622930662.3402529-CDS-C-linearis_contig86:538900..539014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 538901..539014 +
1690881183.9919493-CDS-C-linearis_contig86:538900..5390141690881183.9919493-CDS-C-linearis_contig86:538900..539014Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 538901..539014 +
1622930662.3578086-CDS-C-linearis_contig86:539286..5395111622930662.3578086-CDS-C-linearis_contig86:539286..539511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 539287..539511 +
1690881184.0038438-CDS-C-linearis_contig86:539286..5395111690881184.0038438-CDS-C-linearis_contig86:539286..539511Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 539287..539511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16238.1

>prot_C-linearis_contig86.16238.1 ID=prot_C-linearis_contig86.16238.1|Name=mRNA_C-linearis_contig86.16238.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=556bp
MLPNTTVPTGRALLRLAVAGNAGSGRHAAAACTNRRRIGTTASSDGPSDV
HCANLLARHTANGHRSGRGSSRGSSRGSSEGGPSSAWSLSAASAASAIVC
ARQQAGEREEDVCLCKGKISEKDSLQDYARRLQRLRSLRDIFEEYATVNA
DDVGQLMTCGDFLRAMLCYKYVRVDDRELKRRCARYLNPLLGDDHGLISF
DEFCFLLSLVSIPAGLLDVAFAAVDADGSGTIDVGELDRLVKRLAPSESG
GGNSTAGESDGDSNGNGEEQRLTGHKRLEEAWFPRKARDDESGGGGGGGG
GGDGDKGVPREKFLAFVRDLRMDVKTVECRLYSRSIRVEEEDEIKPPTVR
RGWREWFSSSVLGRGGTSGGRSSGSEAGDGDEGGGGGGGEEEDDAAAAGW
WSWYKNDTISMADLALTLVSTCHPRDMPVFLARVQAIQKKRKQVPLRDAL
LLHEVLEDHAQDLEDALGMYSKASSGGAVNPADFARAAKVISGKELSPEC
VWLVFKIFDRGADGKLDHDELIEATRERLRRLPGQRDSPGGIARFVQCAR
GDSVK*
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mRNA from alignment at C-linearis_contig86:534266..539795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16238.1 ID=mRNA_C-linearis_contig86.16238.1|Name=mRNA_C-linearis_contig86.16238.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5530bp|location=Sequence derived from alignment at C-linearis_contig86:534266..539795+ (Chordaria linearis ClinC8C monoicous)
CTTTTCCGCCCTCCACCACACGCTCTGTTGCCATGCTCCCGAATACAACG
GTACCGACTGGGAGGGCCCTGCTTCGTCTTGCTGTAGCAGGCAACGCAGG
TGTGCATGCGTTACCGAGCGCACCGAGGTCGAAAATGTAACGAACACATC
TTGGGAGATCCATGTTTGTTGCGTGCAAGGGACGCGCTTCCCTTCAAGGC
TCCAATCACTATCAGTGTCCAGCAGCCTTACAGTGGCTTCCGCTCTTCGT
CTCGTGCAATCCAGCGCTAACACACCATTGCACTCGACACGAGTGTATCA
GGGATGATTTCAACATTTTTGGCAACCCATGACCGAATACATGCTGCTGA
ACATCGCGCCCATTCTCTGTCTGTCACAAGCAATACAAATGCGAGGCCGT
CGTTCTGCCAACCACCTCTTGGTGCGTTTTGATGAAAATCCTCGATGCGT
GTGTGTTTACTGGATTGGGCACAACCTAAACACCTTACATTTAGTACCGC
GCACCTAAAAAAAGATAGAATACTTCACTCTCAGTAGACATCGTGCAAAA
CTCTAACGCACAGAGTAGACTACGTGGGCTGCATACAGAAGAAGTAGTAC
CGACAACGAATCACCTAAGGTTGTCGCTGGCAGATGATGCGCGCCGACGC
AACGCACCCCTCGGGACACGGCTTTTGTGTGATCCACTGCCTGCATGTGG
CTTTTCGATTCAAAACGAGGGAAAATACTACTCCAGTAGTACTTTTTTAC
GCCCTCCGTACCTCTTTCACACATCATCCTAATCGGTGAATCGGCAAGAT
ATTTTAGCGCCACTAAAAATTACAACAGTCCTAAATAGAGTTACTAAATA
GCACCGCCATGTTGTTGGCTGCGACCCCAAAGAAGGATCACCGTGTGCCT
CGGTTCTTTCGCGCACACCCTCCTTCCCCGCCAGCGCCAACTCTAAAAAC
ACGGCCTCGACCCATCGAATCGTAAAAAACGGCAACGCGCACAGGTTCCG
GCAGACACGCCGCAGCAGCGTGCACCAACAGGAGGAGGATCGGGACAACA
GCAAGCAGCGATGGACCTTCCGACGTCCACTGCGCGAACCTGCTTGCCAG
GCACACCGCCAACGGTCACAGGAGTGGTAGGGGCAGCAGCAGGGGCAGCA
GCAGGGGCAGCAGCGAGGGAGGGCCGTCGTCGGCCTGGTCGTTGAGTGCA
GCTTCCGCCGCATCGGCGATCGTTTGTGCACGGCAGCAGGCGGGGGAGAG
GGAGGAGGACGTGTGCCTGTGCAAGGGCAAGATTAGCGAAAAGGACAGGT
GTGTCATCTGCGTGTTCGTCGTCGTCGTTGTTGTTGTTGTTGTCGTTGTT
GTTGTTGGTGGTAACTCGTTGATTTCCCTCCCTTCCCTCTTGGTCTTTCA
ATCTTTTCCGCTGCAAAAAAACACAGCACATGCTATACTTCCTTCGATCC
ATCACGCAAATCCTTGTTGTCCCCCCGCGTTGCTGCTGTTGCTGCTGCTG
CTCCTCCTCCGCCTCCTCCTGACTTGGTCGGCCGCCCCCTGAAAACGTTT
TCGAAACACCTCGCAACACTCTTGACTCATCTCGAGAACAGCCTCCAGGA
TTACGCCAGAAGGCTGCAGAGGCTGCGCTCCCTGCGGGACATCTTCGAGG
AATACGCGACAGTCAACGCCGATGACGTCGGCCAGCTCATGACCTGCGGC
GACTTTCTCCGGGCGATGGTGCGAGCAAGAAAAAATATAGGGACATAGGC
GGGGGGAAGGTGGGAGGGGGGGGGTTACGTGGCTCAGGATTGGTATTTTG
TAGCTGATACGCTCCGCCCGAGTTTTTCCGGGGCGACCCGGTGTTTTATC
AGAAAGAGAGAGACACTTCGCTTACATGTACTGCACTTTTTGTGGAGTGC
CCTGGCACATTCGAGTCCTCTGGGCGAAAGCGCTGCTGGTGTTGGTGTTG
ATGTTGATGTTGGTGTTAGGGACGGCTGTTATTGTCGCTAGGTATTTGAT
ATGTGAGGCAAGGGTGTTAGGTGTTAGGAGACACCACCCTTTCTGTCGCC
CACGCTTTGTCCTCGTGTGTATATTTAGAGCCAGACTCGCTGCATTGGAC
ATATCATAGGTGGCACCACCCCTTGCTCTTTTTGCCAAGAACGACTCCAC
CACACCCGCTCTTAGCCTTTCTCATAGCCCCTGCTCTGACCCTTGCTTAT
ATAACTCCCGACTCCAACACCCAAACACCCCCAACACAAACCGCTACCCT
AGCTGTGCTACAAGTACGTCCGCGTGGACGATCGGGAGCTGAAGCGCCGG
TGCGCCCGTTACCTGAACCCTCTACTCGGCGATGATCACGGCCTCATCTC
CTTTGACGAGGTGTTGGGAGATCTTATACTTCAGTAGATGTGTATCCACA
TGTTAAGTGTAGGCGTGTATGCGTACATGAGTGTAGGTTCGGGAAACCAC
CCGACCCTGACTGACGTTTTTTTTTCCTTCCTTCTCTGCTAGGAAGGGTG
GTTTTGCGCCTCTTGTTTCTTCTTACAACATCCGTCGTGTTTTGTGTTGT
TTCCATGACTTACTTGATGGCGCTTTCATGCTTTCATGCTTTCATGCTTT
CATTTCATTTTGGTTCCTTGGTTCCTTTTGGGGCGTGAGGCCGCGTAAAC
AAGCGCCTTTCCTGGCATTTTTTTTGTAATTTCCATTCTCGTGTTGTTCG
TCAACAACACCTCAACCCGCTTTTCCGCCCCGTGCGCGGCAGTTCTGCTT
CCTGCTGAGCCTGGTGAGCATCCCCGCCGGGCTGCTGGACGTGGCCTTCG
CCGCCGTTGATGCCGACGGGAGCGGCACCATCGACGTGGGAGAGCTGGAC
AGGCTGGTCAAGGTAAGTTAACATACATCGCCGTTCCGTTGCGGTTTGGT
TTAAGTTCTCGGAAAGGGACAGCTCTCCTTCTATCTCTCACCCTTTGCTG
CGTTGGAAGGAAAGGCTTGGGCGCATCGCCCGCCCATGTGTTGATTTGTC
TCTCCAAAAACCCCAAAAAACAAAACAAAAACAAATACAAGTGGATCGTT
GCTTGATGGCGGGCGGTTGTTAGTCCATCACAATCCGCATCGCCGTTTTC
GTCTTCGTCCGACGAACTACACTACACTAACCCTAACCCTAACCCTACCC
GAAACCTACACCACACCACACCACACCACACTACACACATAAAAACCGTA
TTTAAAACAAACGCAGCGGTTGGCACCGTCCGAAAGCGGCGGCGGCAACA
GCACCGCCGGCGAAAGCGACGGCGACAGCAACGGCAACGGCGAGGAGCAG
CGCCTGACCGGCCACAAACGTCTGGAGGAGGCCTGGTTCCCGAGGAAAGC
CCGGGACGACGAAAGTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGATG
GTGATAAAGGGGTGCCGCGGGAGAAGTTCTTGGCGTTCGTGCGAGACCTG
AGGATGGACGTCAAGACGGTCGAGTGCCGCCTGTACTCGCGGTCGATGTG
AGTTCGGCCTTTTTTTTGTTTTGTTTTTGTGTTGTTTCATGTTTGTGTTT
TACGGCTGCGACCGCCGACCCAATCCTTGTGTACGGCTTACTTTTTTGCT
CGCTCTCGTTGGTTTTCTTACGCGCACGCCCGCCGACGAATTCCACGCGC
ATGCCGAGTTCGCGACGGACGCTATATCCATGTATCCATCGATCTATTCA
TCGATCTATTCATTCATGCATCGATCCATTCATTGGAGCGCCAACGCGAT
ACGTTCTGCGGCACCCGAGAGCGCGCGCGCGTAGTTTTTGTGGCCTCAAT
CGCCCGATCGTTTATTTTTGTTCGAGAGCGCCTGAGACATGCATCAATCT
AGCGTGTCTCGTTCTGCAACCAACCACAACGAAACGCTCCTACACACCCG
AACACTGACGCGCGGACTCGCAGACGCGTCGAAGAAGAAGACGAGATAAA
GCCGCCCACCGTCAGACGAGGGTGGCGAGAGTGGTTTTCGTCGTCAGTGC
TGGGCCGCGGCGGGACCTCTGGCGGCCGGTCGAGTGGTTCCGAGGCCGGT
GACGGCGATGAGGGCGGCGGCGGCGGCGGGGGGGAGGAGGAGGATGACGC
GGCGGCGGCGGGGTGGTGGAGCTGGTACAAGAACGATACGATCTCGATGG
CGGACCTGGCGTTGACGCTGGTGTCCACGTGCCACCCCCGGGACATGCCG
GTGTTCCTGGCGAGGGTGCAGGCCATCCAGAAGAAGAGGAAGCAGGCAAG
CGCAAAAAGGGGTTGTACTGCTGTAGTGGAAATATTCTTGTCTGGTTCTG
AAAATCATTTTCGGGTTTGTTTTGTTGACTTGACCCCTTTGGAAGTAATT
TAGTCTGGTTCTGAAAAAATCTCGGGGGTTTGTTTTGTTGACCCTTGGAG
GCGTACCGGTGTTTGCTGGCGAGGGTGCAGGGCATCCAGAAGAAGTGAAA
ATCAGGTGGGTATCTAGGTGAGGTAAACGAGAGAGAGAGCGAGAGAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGTAGCCTAAAGTGAGCTGCTACAA
AGCCGGCACGTAGTTTCGAGGGTATTTATTGTACGTGATCTTTTTTAGGT
TCTCTCCCCTCACTACTGTCCTATTTGTCCAACAGGTACCTCTGAGGGAT
GCCCTGCTCCTGCACGAGGTCCTTGAGGACCACGCGCAGGATCTGGAGGA
TGCTTTGGGGATGTACAGCAAGGCCTCGTCTGGGGGCGCCGTGAATCCGG
TAAGGGGAGAGAGGGGGGGGCACGCTTGGACAGGACGAGACGAACAGCAC
GTGTTTCCGAAGGATGAAACTAAAGTTACTTGGTCTCTCCACACCCAGGC
ATGACATACATACATATCAACCACCATAAACAACAGCTCGCCTCCCAACC
CCGCGCACCCCAGCACACCAGAAAAAGGAAAAACGCCACATTACATTCGC
AACGCGAACAAAGCTAAAAATTAAAACCAGCAGTATAACCAACCACCGAC
CCGAAACCTATTTTTTTTCAGGCGGACTTCGCGCGCGCCGCCAAAGTGAT
CTCTGGGAAGGAGCTGAGCCCCGAGTGCGTGTGGCTGGTGTTCAAGATCT
TCGACCGCGGGGCCGACGGCAAGCTGGACCACGACGAGCTCATCGAGGCC
ACCCGAGAGCGGCTGCGCCGCCTGCCCGGGCAGCGGGACTCCCCCGGCGG
CATCGCCCGGTTCGTGCAGTGCGCGCGCGGCGACTCTGTGAAGTGACATG
GCATGACATGACGCCTGGCCGTCTGTTGACATGCGCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTTGCACAGCTCC
AGTGTTCAGCTTTGTTTGTTTGTTTGCTTGCTTGTTTCGAACTCTGCCTT
ATTTGTTTGGCTGGAGGGTAAATGACGATAAACGCCTGTGAGTGCGATTT
GAGCGCCATGGTTTGGAGATCTCTTTAGATTTTGGGTGGTCCCGAGGCGA
TTTGATTCGGTTCAGTTAGTTCTAGGCGCG
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Coding sequence (CDS) from alignment at C-linearis_contig86:534266..539795+

>mRNA_C-linearis_contig86.16238.1 ID=mRNA_C-linearis_contig86.16238.1|Name=mRNA_C-linearis_contig86.16238.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3336bp|location=Sequence derived from alignment at C-linearis_contig86:534266..539795+ (Chordaria linearis ClinC8C monoicous)
ATGCTCCCGAATACAACGGTACCGACTGGGAGGGCCCTGCTTCGTCTTGC
TGTAGCAGGCAACGCAGATGCTCCCGAATACAACGGTACCGACTGGGAGG
GCCCTGCTTCGTCTTGCTGTAGCAGGCAACGCAGGTTCCGGCAGACACGC
CGCAGCAGCGTGCACCAACAGGAGGAGGATCGGGACAACAGCAAGCAGCG
ATGGACCTTCCGACGTCCACTGCGCGAACCTGCTTGCCAGGCACACCGCC
AACGGTCACAGGAGTGGTAGGGGCAGCAGCAGGGGCAGCAGCAGGGGCAG
CAGCGAGGGAGGGCCGTCGTCGGCCTGGTCGTTGAGTGCAGCTTCCGCCG
CATCGGCGATCGTTTGTGCACGGCAGCAGGCGGGGGAGAGGGAGGAGGAC
GTGTGCCTGTGCAAGGGCAAGATTAGCGAAAAGGACAGGTTCCGGCAGAC
ACGCCGCAGCAGCGTGCACCAACAGGAGGAGGATCGGGACAACAGCAAGC
AGCGATGGACCTTCCGACGTCCACTGCGCGAACCTGCTTGCCAGGCACAC
CGCCAACGGTCACAGGAGTGGTAGGGGCAGCAGCAGGGGCAGCAGCAGGG
GCAGCAGCGAGGGAGGGCCGTCGTCGGCCTGGTCGTTGAGTGCAGCTTCC
GCCGCATCGGCGATCGTTTGTGCACGGCAGCAGGCGGGGGAGAGGGAGGA
GGACGTGTGCCTGTGCAAGGGCAAGATTAGCGAAAAGGACAGCCTCCAGG
ATTACGCCAGAAGGCTGCAGAGGCTGCGCTCCCTGCGGGACATCTTCGAG
GAATACGCGACAGTCAACGCCGATGACGTCGGCCAGCTCATGACCTGCGG
CGACTTTCTCCGGGCGATGCCTCCAGGATTACGCCAGAAGGCTGCAGAGG
CTGCGCTCCCTGCGGGACATCTTCGAGGAATACGCGACAGTCAACGCCGA
TGACGTCGGCCAGCTCATGACCTGCGGCGACTTTCTCCGGGCGATGCTGT
GCTACAAGTACGTCCGCGTGGACGATCGGGAGCTGAAGCGCCGGTGCGCC
CGTTACCTGAACCCTCTACTCGGCGATGATCACGGCCTCATCTCCTTTGA
CGAGCTGTGCTACAAGTACGTCCGCGTGGACGATCGGGAGCTGAAGCGCC
GGTGCGCCCGTTACCTGAACCCTCTACTCGGCGATGATCACGGCCTCATC
TCCTTTGACGAGTTCTGCTTCCTGCTGAGCCTGGTGAGCATCCCCGCCGG
GCTGCTGGACGTGGCCTTCGCCGCCGTTGATGCCGACGGGAGCGGCACCA
TCGACGTGGGAGAGCTGGACAGGCTGGTCAAGTTCTGCTTCCTGCTGAGC
CTGGTGAGCATCCCCGCCGGGCTGCTGGACGTGGCCTTCGCCGCCGTTGA
TGCCGACGGGAGCGGCACCATCGACGTGGGAGAGCTGGACAGGCTGGTCA
AGCGGTTGGCACCGTCCGAAAGCGGCGGCGGCAACAGCACCGCCGGCGAA
AGCGACGGCGACAGCAACGGCAACGGCGAGGAGCAGCGCCTGACCGGCCA
CAAACGTCTGGAGGAGGCCTGGTTCCCGAGGAAAGCCCGGGACGACGAAA
GTGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGTGATAAAGGGGTG
CCGCGGGAGAAGTTCTTGGCGTTCGTGCGAGACCTGAGGATGGACGTCAA
GACGGTCGAGTGCCGCCTGTACTCGCGGTCGATCGGTTGGCACCGTCCGA
AAGCGGCGGCGGCAACAGCACCGCCGGCGAAAGCGACGGCGACAGCAACG
GCAACGGCGAGGAGCAGCGCCTGACCGGCCACAAACGTCTGGAGGAGGCC
TGGTTCCCGAGGAAAGCCCGGGACGACGAAAGTGGAGGCGGCGGCGGCGG
CGGCGGCGGCGGCGATGGTGATAAAGGGGTGCCGCGGGAGAAGTTCTTGG
CGTTCGTGCGAGACCTGAGGATGGACGTCAAGACGGTCGAGTGCCGCCTG
TACTCGCGGTCGATACGCGTCGAAGAAGAAGACGAGATAAAGCCGCCCAC
CGTCAGACGAGGGTGGCGAGAGTGGTTTTCGTCGTCAGTGCTGGGCCGCG
GCGGGACCTCTGGCGGCCGGTCGAGTGGTTCCGAGGCCGGTGACGGCGAT
GAGGGCGGCGGCGGCGGCGGGGGGGAGGAGGAGGATGACGCGGCGGCGGC
GGGGTGGTGGAGCTGGTACAAGAACGATACGATCTCGATGGCGGACCTGG
CGTTGACGCTGGTGTCCACGTGCCACCCCCGGGACATGCCGGTGTTCCTG
GCGAGGGTGCAGGCCATCCAGAAGAAGAGGAAGCAGACGCGTCGAAGAAG
AAGACGAGATAAAGCCGCCCACCGTCAGACGAGGGTGGCGAGAGTGGTTT
TCGTCGTCAGTGCTGGGCCGCGGCGGGACCTCTGGCGGCCGGTCGAGTGG
TTCCGAGGCCGGTGACGGCGATGAGGGCGGCGGCGGCGGCGGGGGGGAGG
AGGAGGATGACGCGGCGGCGGCGGGGTGGTGGAGCTGGTACAAGAACGAT
ACGATCTCGATGGCGGACCTGGCGTTGACGCTGGTGTCCACGTGCCACCC
CCGGGACATGCCGGTGTTCCTGGCGAGGGTGCAGGCCATCCAGAAGAAGA
GGAAGCAGGTACCTCTGAGGGATGCCCTGCTCCTGCACGAGGTCCTTGAG
GACCACGCGCAGGATCTGGAGGATGCTTTGGGGATGTACAGCAAGGCCTC
GTCTGGGGGCGCCGTGAATCCGGTACCTCTGAGGGATGCCCTGCTCCTGC
ACGAGGTCCTTGAGGACCACGCGCAGGATCTGGAGGATGCTTTGGGGATG
TACAGCAAGGCCTCGTCTGGGGGCGCCGTGAATCCGGCGGACTTCGCGCG
CGCCGCCAAAGTGATCTCTGGGAAGGAGCTGAGCCCCGAGTGCGTGTGGC
TGGTGTTCAAGATCTTCGACCGCGGGGCCGACGGCAAGCTGGACCACGAC
GAGCTCATCGAGGCCACCCGAGAGCGGCTGCGCCGCCTGCCCGGGCAGCG
GGACTCCCCCGGCGGCATCGCCCGGTTCGTGCAGTGCGCGCGCGGCGACT
CTGTGAAGTGAGCGGACTTCGCGCGCGCCGCCAAAGTGATCTCTGGGAAG
GAGCTGAGCCCCGAGTGCGTGTGGCTGGTGTTCAAGATCTTCGACCGCGG
GGCCGACGGCAAGCTGGACCACGACGAGCTCATCGAGGCCACCCGAGAGC
GGCTGCGCCGCCTGCCCGGGCAGCGGGACTCCCCCGGCGGCATCGCCCGG
TTCGTGCAGTGCGCGCGCGGCGACTCTGTGAAGTGA
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