mRNA_C-linearis_contig82.16015.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16015.1
Unique NamemRNA_C-linearis_contig82.16015.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig82.16015.1 vs. uniprot
Match: D7G991_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G991_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.940e-35
Identity = 71/105 (67.62%), Postives = 84/105 (80.00%), Query Frame = 1 
Query: 1447 RHQARHQEWSTKPALGKRVLVEFEGGSFYAGTINTSGDSEKDRNHSKGKWGVLFDDCTRDRFADGATDVMISNRSKPTEFSRELYDYYLRHQNGRKLLEGVKVVP 1761
            RHQ R  EW+TKPA GKRV+VEFE G +Y GTI+T GDS KD  H+KG+WGVLFDDCT+DRF DGATDVM+SN+  P   S EL DYYL+  NGR+L+EGV+VVP
Sbjct:    3 RHQERLAEWNTKPAFGKRVMVEFEDGIYYPGTISTDGDSAKDIYHAKGRWGVLFDDCTKDRFHDGATDVMVSNQPSPRSISAELRDYYLKQANGRELMEGVEVVP 107
[Close]
BLAST of mRNA_C-linearis_contig82.16015.1 vs. uniprot
Match: D7FI19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI19_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.420e-15
Identity = 76/192 (39.58%), Postives = 97/192 (50.52%), Query Frame = 1 
Query:  289 MADVVDECPPLAKLFEGGL--ERFQEVFQAPGGLLAGPGAGSRPGASDPQDH---------TKAPAGAKRKLIGGPVDIEGGGXXXXXXXXXXXXXXXXXXXXXXPPQKGVSWSEEGARGRRGTRDARSNIEAEAWPGLEQALKASKQDMA--ASAG-------GRGGSKGVGVRSRPADQKAKDESAKQKR 804
            MA V+DECPPLAKLFEGG   +RFQEVFQ P  +LA  GAG+   AS+ +D          TK  A       GG  D+ G                           +G          R+G R + S +EAEAWPGLE+ALK S++ +   A AG       G  G +G+G+R+RPA  +AKDESAK+ R
Sbjct:    1 MAVVIDECPPLAKLFEGGFLEKRFQEVFQVPSAVLARSGAGAE--ASEVRDAMSIALTRKGTKGAAATAGPNRGG--DLAGDAPEGARGGRGSASP------------RGXXXXXXXXXXRKGARGSGSGVEAEAWPGLEEALKESEKKVTPVAEAGPATAPVVGSSG-QGIGMRARPAGGEAKDESAKRIR 175
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G991_ECTSI1.940e-3567.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI19_ECTSI4.420e-1539.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:642024..650678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_011360.1
Exons10
Model size2525
Cds size2376
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.8879557-CDS-C-linearis_contig82:642023..6427401622930614.8879557-CDS-C-linearis_contig82:642023..642740Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 642024..642740 -
1690881160.4596457-CDS-C-linearis_contig82:642023..6427401690881160.4596457-CDS-C-linearis_contig82:642023..642740Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 642024..642740 -
1622930614.903892-CDS-C-linearis_contig82:643160..6433151622930614.903892-CDS-C-linearis_contig82:643160..643315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 643161..643315 -
1690881160.4748113-CDS-C-linearis_contig82:643160..6433151690881160.4748113-CDS-C-linearis_contig82:643160..643315Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 643161..643315 -
1622930614.919999-CDS-C-linearis_contig82:643788..6439581622930614.919999-CDS-C-linearis_contig82:643788..643958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 643789..643958 -
1690881160.489317-CDS-C-linearis_contig82:643788..6439581690881160.489317-CDS-C-linearis_contig82:643788..643958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 643789..643958 -
1622930614.9415803-CDS-C-linearis_contig82:645228..6453091622930614.9415803-CDS-C-linearis_contig82:645228..645309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 645229..645309 -
1690881160.503042-CDS-C-linearis_contig82:645228..6453091690881160.503042-CDS-C-linearis_contig82:645228..645309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 645229..645309 -
1622930614.9617167-CDS-C-linearis_contig82:645754..6463481622930614.9617167-CDS-C-linearis_contig82:645754..646348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 645755..646348 -
1690881160.518226-CDS-C-linearis_contig82:645754..6463481690881160.518226-CDS-C-linearis_contig82:645754..646348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 645755..646348 -
1622930614.974476-CDS-C-linearis_contig82:646760..6469151622930614.974476-CDS-C-linearis_contig82:646760..646915Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 646761..646915 -
1690881160.5292442-CDS-C-linearis_contig82:646760..6469151690881160.5292442-CDS-C-linearis_contig82:646760..646915Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 646761..646915 -
1622930614.995692-CDS-C-linearis_contig82:647254..6475361622930614.995692-CDS-C-linearis_contig82:647254..647536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 647255..647536 -
1690881160.5385182-CDS-C-linearis_contig82:647254..6475361690881160.5385182-CDS-C-linearis_contig82:647254..647536Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 647255..647536 -
1622930615.015341-CDS-C-linearis_contig82:647897..6479951622930615.015341-CDS-C-linearis_contig82:647897..647995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 647898..647995 -
1690881160.5480983-CDS-C-linearis_contig82:647897..6479951690881160.5480983-CDS-C-linearis_contig82:647897..647995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 647898..647995 -
1622930615.0455177-CDS-C-linearis_contig82:648185..6483091622930615.0455177-CDS-C-linearis_contig82:648185..648309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 648186..648309 -
1690881160.5584848-CDS-C-linearis_contig82:648185..6483091690881160.5584848-CDS-C-linearis_contig82:648185..648309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 648186..648309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.062576-UTR-C-linearis_contig82:648309..6483251622930615.062576-UTR-C-linearis_contig82:648309..648325Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 648310..648325 -
1690881160.5722435-UTR-C-linearis_contig82:648309..6483251690881160.5722435-UTR-C-linearis_contig82:648309..648325Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 648310..648325 -
1622930615.0840502-UTR-C-linearis_contig82:650547..6506781622930615.0840502-UTR-C-linearis_contig82:650547..650678Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 650548..650678 -
1690881160.5819082-UTR-C-linearis_contig82:650547..6506781690881160.5819082-UTR-C-linearis_contig82:650547..650678Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 650548..650678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16015.1prot_C-linearis_contig82.16015.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 642024..648309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16015.1

>prot_C-linearis_contig82.16015.1 ID=prot_C-linearis_contig82.16015.1|Name=mRNA_C-linearis_contig82.16015.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=792bp
MPRRAAKATPAGKHRDKDENGEGRGKQALTLPRAGDTARQIGMGFLKMAD
VVDECPPLAKLFEGGLERFQEVFQAPGGLLAGPGAGSRPGASDPQDHTKA
PAGAKRKLIGGPVDIEGGGGGGSGGAGGRGGATGAGGSGSSPPQKGVSWS
EEGARGRRGTRDARSNIEAEAWPGLEQALKASKQDMAASAGGRGGSKGVG
VRSRPADQKAKDESAKQKRKPSPPVPAAFGFPAAPPPRSAAVNALQRIAA
AGTPRKPTHLEPKSAAAGADGAAGFASAGGKNTNSQKEAGAEEGGGNKSE
TSITLAASRSVTAAAAGKKPTKGGPGGSRATPAPEVGGAHGDGASQGSGG
SGKLKGGGTALSELAGGPGKRCTTGEDMLSRLDARVFRFVEAGGCREEGC
ELRDEAHCHRGPGCDCTRNNDTYRWPSDREKIKRHQARHQEWSTKPALGK
RVLVEFEGGSFYAGTINTSGDSEKDRNHSKGKWGVLFDDCTRDRFADGAT
DVMISNRSKPTEFSRELYDYYLRHQNGRKLLEGVKVVPETKRDEAARVAG
ETEQQGAAGKASAHKEKGAGAGKHRRPKPWENNKPRKESPATDRDEVGGA
SGKLKHATAGEKLAGTGPEATSASEARTSGASGGKNKRKHSIASEDEETD
IELEEQETGATHRKGKGKSGGAADDGGGGVGDPGKKKGAGDSGGGCGGIT
TSSSKNSAGTTIKYKSNDPVGAVGTGSGDEDGYLMATVSAISKKPKTSGG
GHSSGVKNVSHKMASKAAKQKGGGGGGSGGGEGGGEDRGEDS
back to top

mRNA from alignment at C-linearis_contig82:642024..650678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16015.1 ID=mRNA_C-linearis_contig82.16015.1|Name=mRNA_C-linearis_contig82.16015.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8655bp|location=Sequence derived from alignment at C-linearis_contig82:642024..650678- (Chordaria linearis ClinC8C monoicous)
CCAGACACTGCCAGCTTCACACGAGAGAATTATCCTTTTGAGGCACACGG
AGAAGCTCGTGCCCGTGGAGTTGTTGTCCAAGACGTCGCTTGATACTCTT
CCGCGGCCTTTTCTGCCGTTTTGCGGTCTAGGTGAGCGTGACAGCGAGAC
ATGCACACGAGAGCCAAAACGGTGCGTAACGCGCCGCACAGCAAGGCCGA
TTTTTCTGTCTTGTGTGGACATGTTCGTCTACTTTCGGAGGCGAACAGCA
ACAACAAGTGGCTGCGTGTAAGAATATGTGCCCCTACTCCTACACGGTCA
CCGGAATTCTCTTTTGCCCCTTGCCTTTGCATTTGCAAAGAATATCATCA
GAGGATACGCCGCACATAGCCGAGTCGAAGAAACGGCGTGGCGTGTACAC
GATGCATCGCGCCAGTCCTCGTGTAGAGCGTCTGGGAAGGGGCCTCAAAG
CTTCGCAATGTTAATAATTTGGCTGTATGATGACCCACGCGAACATTGGC
CCGCGCATTCGTGCTGCTTCGGTTGGGTTTTCAGCAGATGTGGCCCACTG
GTTGCCCGCCCGACGTGGATCGTTCATCGATCACGCACGTAAATCCACCT
ACCTTTTTCGAATATGCTGGCGCCCACTCTTAGAGAGACCGCACCCTTTC
ACCTGCGCGCCAATAGAGAGACGGCACGCTTAGGGGGGTAGTCGACGGCG
ATGAGCACCATCGAGTCACACGCGTTTGTAACACCGATTTTTGTGCAGGT
GCAGACTGTGCTGCCTGACCGGCGAGAACCCGGCACGGAATATCCTAGCC
CCGGGGGCCCACAGATTCAAATATGGTACCGCTATGCCCCCCCCCCCCAA
CTCGCTTTTTTTTTTGGGCTTATTCCAGTTTGGTCGATTTCGCCTATTTT
ACTGGATTTAGAGTGGAACGAGTCCAATAGCTGAAAGTGAGCATCTTGCC
ACAGGTCGCTTTCACGTTTTGTGCTTTTCCAGAGAGTTTTACTCCTTGTT
CTTGGGTACATCAGTCAATGGTAAAGGGTTGGCGTCGATATATAGTCGTT
GTGTGTTGCAATGGTTTCGAGCTTTCTTCTTGTCACACTCGGACACCGGC
CGCAAACCCAAGCACCATCATCCTGTGTCGCAAGTGTTGCCAGGTCTTCC
TCTGTCGCGAGTCTATGCTCATCATGCTCATGGTCCCCGACAGGTGGACA
ATAGTCTGCGTCACCACGTTCCTCCGGAACATGATCCCCAGCCTCTGCTG
GAGTGCTCTCCATACCCGGCAAGGAGCGCGGAGAGTGACAGATGCTTGTA
TGCGAGCGTGTGGGTAGCTTGTGCACTAGTCCATGTACACGGGGTAGTCT
ATACTGCTGTGGCAAGCTGTGTATAGAAAAAGGGCTGCTGTCGGATTTTT
GGGGGGGGGTGGTCAAGTATAATACGAATACAACCCCCCCCCCCTCCTCT
TCATTTTGGCCCTTAATCCAGTTTGGGGCATATTGTAGCGGTACCACATT
CGAATCCGTGGGCCCTCTTGCGCTGGCAGTGTAGGGGTACTCAAGATTAG
GACCTGGGGATGTGTACCCCCAAGGGTCGGTGATTTTGACATCTCCAGCT
TTATTTTATTTCATTTTTACCGAGCATAGCGTGCAGAGGGGAGCGGAGGG
CTCCAGACTAGTTGTTTTGATTTTGTCTTGATTTTATCGCTCTGCTGACG
TTTCGGGTCCATTTTATTTTTAGTATACCTTTTTAGGGTAAGTTAAACCT
GTCACCATGGGAATTGGCCGTGTCTGCTGGATCAGTACGGACAAAGGGGG
TACTGGTGAAGAGAGACGGGTTGGTTTTTAATATGAAGACAACAACAACA
ACAACAACAACAACAACAACAACAGACGTAGTCAATTCTCAGCACGGGAC
CAATCCCAGAGACGTGCCGCGAGATTGCGCAGAAGCTACAGAATTACCTC
TTTTGCAACGACAACGAGAGGGACACGCGCAGAGTTGCTGGCAACCTCTC
AAGGGATACGGCGTGTTCTAAAAAAAAGTGAAGGCGTGAGAGCCGAGAGC
CTCGACTCTAACCCACGGATACCCGGAATATGTCCCTCTCAAGCATTCGA
AGAACATTCGAACATGCATTTATCAATTTACAGCAAACCATGCGGATGCT
TGACATCACCACGACCCTGCTTTGTCATCGCCTAGGCCGTTTTCAGCAGT
TTGCCTCGTGTGCCCTCACTCACAGTTGTCTCACTTCTACGCACTCGTGC
GTGTATCTGCATTTTTTCGAAGGGTGCTCTGCACACCAGTTAGTCTCATC
ACCCCCGCCCCCGTCTCGTCTACTGCACTCTTCACAACCGGTAACGTCGG
CAGATCCACGCTTTTCGGCATGCCTCGCCGGGCGGCGAAAGCCACCCCCG
CGGGGAAGCATCGAGACAAAGACGAGAATGGCGAAGGACGGGGCAAGCAG
GCGCTGACCTTGCCTAGGGCGGGCGATACTGCGCGACAGATAGGTAGGCG
CGAGGCGAGCTCTTCTCCTTGAGCTGAGCTGTTTTGTGTTTTTTTTCATT
CGTTTTGGCAGGGTTGTTTTTTTCTTTGGTGGTGTTGTCCCGCCTTTTCG
CGCTGGTTTGCGCTCACGCACACGCACCCCCTCGCTGGGACTGGTATCGT
CTGCTGCTTCTGTCACTGGTGCGCACGTAAAAGGAATGGGTTTCTTGAAG
ATGGCCGACGTAGTCGACGAGTGCCCGCCTCTGGCGAAGCTTTTCGAGGG
GGGCCTGGAGCGTTTCCAAGAAGTATTTCAGGTGAGTGGCAGGAAAAGGC
GACGGGGGGGAGTGAGCGTCCTCAGGAAGTCGTTGCTCAGCATTAGGGGT
AACTGCTTGCCTTCGGCTGTAAAGATTGGAGATTGCCGGGGCCAGGCTCG
AGAGGTTAGCTCTATCTCCAGAAATCGCTACCGATGGTGCGTGATCCAGG
CTTCCTCTGTAGCTCAGCAAGGCACGTCTAGCCTCACAGACTTGCGAACT
GGACTTGCACCCGTCACCCCTTTCTTTTTGTCGAGCTTTGTGCCACCTGC
GGTGTTCTAGGCGCGAGGGCCCTTGGTCGGTCGTGTTGTTATGGTGTGAT
GGTCGTGCTCAAGCGAACCCACGACGTGGACTCTTTTCGCAGGCACCTGG
TGGGCTGTTGGCGGGACCTGGGGCCGGGTCGAGACCGGGCGCCTCAGACC
CCCAAGACCACACCAAGGCGCCCGCTGGGGCGAAAAGGAAGCTCATCGGA
GGACCCGTGGACATCGAAGGTGGAGGCGGAGGTGGAAGCGGAGGCGCCGG
CGGACGGGGGGGTGCGACAGGCGCTGGGGGGTCGGGGAGTTCTCCGCCGC
AGAAGGGCGTTTCTTGGTCGGAGGAAGGGGCGAGGGGCCGGAGGGGTACG
AGGGATGCGAGATCGAACATCGAGGTGAAGAAATTTTGCGCTTTTGCCGT
GGGCATGAGAGAGCATGATGATTGGCTGCCGTGTGTAGCGTGCGAGCCCG
AGAGCGGTGGCGGAGCTGGTGCCGGGGGGCTTCTTTCGCAAGCGTGCCTT
TTGCTGTTTCGAAATTGACAGAAGACCTTTCAAAATGTCTAGACGGATGT
CTCTCCCTCCCTTCACACGTCCTCTCCGCAGGGTTTGCCGTGGTGACCTG
CGCTGTATTTTTAGTGCTGCACCAGCTGTGTCGAACCCAAGATGGAAGAG
AGTCGGTCGCCGGTCGTCGCTTGTTACGTTCTCATCGTCTCCTTTTGCTT
GGCGTGAACGCAGGCCGAAGCATGGCCGGGACTAGAACAAGCACTGAAGG
CGTCAAAGCAGGACATGGCAGCGTCCGCCGGTGGGCGGGGTGGTAGCAAA
GGCGTGGGGGTGAGGAGCCGCCCGGCGGACCAGAAGGCCAAGGACGAGTC
CGCCAAGCAAAAGCGAAAGTGAGTTCTCAGCTGTATGGGTAGTACGTGAG
TCGGGTGGCGATTGGTCTAAAATAAAGATGACCCCCCTGTCCTATAGGGC
GCGGGACCGAGGCGAAACAGACACGTCAGATCGAGGGAGTGTCGAAACTA
TCCGCGCAAGCTTTGATTATGTATCACGTTTTTTGCGGTTGATTTATTTG
GTTGCTTTTCTTCGATAACAGCAGTCCCGATGCGACCTTAGCCTTTTATT
GAGTTTTGTTTCTAGCTTCAAGGAAACAATCACTTCCCACTGTCTGGTTG
CGGTAAGAACAGGCAGACAACCTTGGATGCTGTTGCCGTTACCGACAAAG
AAACGCCGACAAAACCCCACCCACGGTTATGCACCTTCTACCACCGTTAA
CCCTTTCGCGTTTGCTGCGACGACTCGAAGGCCTTCACCGCCGGTGCCAG
CAGCATTCGGGTTCCCGGCGGCCCCACCTCCGCGCTCGGCGGCGGTGAAC
GCTCTCCAACGAATCGCCGCTGCCGGCACGCCGCGGAAACCGACACACCT
CGAACCGAAATCGGCAGCAGCGGGAGCCGATGGGGCGGCGGGTTTTGCAT
CAGCCGGCGGTAAAAATACCAACAGTCAGAAGGAGGCGGGGGCAGAAGAA
GGTGGAGGAAACAAATCGGAAACATCGATCACATTGGCTGCATCGCGTTC
GGTGACGGCGGCGGCGGCGGGGAAGAAACCAACTAAAGGTGGCCCCGGTG
GCTCTAGGGCGACGCCTGCACCCGAAGTGGGGGGGGCGCACGGAGACGGT
GCTTCGCAGGGGTCCGGAGGGTCAGGGAAGCTAAAGGGCGGAGGGACGGC
TCTGAGCGAGTTGGCTGGAGGCCCCGGCAAGAGGTGCACGACTGGGGAGG
ACATGCTGAGCAGGCTAGACGCGAGGGTTTTCCGGTTCGTGGAGGCGGGT
GGTTGCCGGGAGGAGGGGTGCGAGCTCCGGGACGAAGCTCACTGCCACCG
CGGCCCAGGATGCGACTGCACGAGGTGAGAAAACTAAGCACGAAGCAGTC
ACGAGACGGAGATATAAATTGAGATGCGGTGCGAGCTGTGTGCTGGTACG
GTTTGTTTTGTGAGCTTTTTTTTTCTCTGTCCTGTTTTGGCACACCAGCG
GCCACAGGTCGGACCGGTGGCATGCCTAAGGCTTTGGTCTTCGGCCGTTG
AACATGCGCATTGCTTTCAGTTTGAATGGGCATGAAACGATCATGTGTCT
ATGCCTTGTTGTCAGTGGAGATATGGTGTCCTGCTTTTTGCTCGTCGCCC
AAGCCATGCCCTTGGACTCTTGTGGTTTGTCGATGAGCTCTACTTAAGAG
TCGTTGACGTGGTCGCCAGAGCCCCTCCCAGGGGGGCACAACAAGGGCGC
CAATTACCCCTGCGGTATCATAACAATTGTTGCTGATGTCGCTGCTGTCA
CGTGCTGTTACGGTGGCAGAAACAACGACACGTACAGGTGGCCTTCCGAC
CGGGAGAAGATAAAGCGGCACCAGGCGAGGCACCAGGAGTGGAGCACCAA
GTAAGCTACCTCGCGCGTTACAAGCTGGATTGACGAAGTCACACACAAAA
TGGCTGGACGCGATTGCCCACGCCGTTTTTACGAATTAGGACCTGATTTT
TTGACACGTGCTTGATATGGCAATGATGATCACCTCCTTGACTGTTCGTT
TTAATTTTTTTTTTCGTGAGTTAGCCCGACAAAAGCAAAATGACATATAC
TTATTTGGCGTCGAAGTGACACAAAAAAATAAAAAAATATAAACGAACAG
TCAGTGAGGTGATCATCATTGCCATATCAAGCACGTGTCAAAAAATCAGG
TCCTAATTCATAAAAACGGCGTGGGCAATCGCAAATTGCATTTTGTCCTC
AAAACCTAGTTGCAGGGCAACAAATATATAGAAAAATGAGGGGGCTCGCA
GACCGCGAAACGGACACGAAAGCGACTTGCTGGCAGCAGGCAAACGGACT
CTGCCTATCGACGTTTTTGTAGGGAAGATACGTGTGCATGTCCAAGCATG
TTGGGGTGGTGACGCAGGCGAAAATAATATATACATACTTCGAAGTATAT
AACATGCCATTTACAATATATAGGTCTCGACCGAGTCAAAGTACGGCCCC
ATTTTTCGTTTGGGCTTGTCTTTTGGGCGGTTTGTGAAGTTCAGAAGCAA
CCGCCACTTGCCATTTCTCTTGTCAAAGTTGCACACGGGGTCAAGAGGTC
TTCTTCCACTGGGGAGTGTGTTCGACACCGGTGCACGTAGGCATGCTGTC
CTCTGGTCTTTGTGTGATGGAAGGGTGGGTGGTGCGCAACTTTTTTTTCA
AAAAATTAGTTCCGCCGCAAAAAAAAATGACGTTTCACACCCCTCTAAAA
CCTATGCACAAGGCGGAGGATATTGTCTTGTGAGGGAACGTGCCCCAACA
GCCTTTTCACCGAGACCTGCAGATCCGCTGTGATTGGTCGATTAATTGGA
TATGCCGAACTCGTCCCAATTCTTTGTTGTTGGAAACTTATGATGTGCCG
AACGAAAGTGAGTTTCTAGGTCAATCCAGCTTGTAGCCTTTTTCTTTTTG
TCTTGCTTTTCCTTGGGTTTGCCAGCGTCGTCGCTTGGCTGCAATATTGT
TTTTCGACGTCGGTATGCTCCGCGCGGCTCGATGTCTCCATTGGTTGGGC
TCTCGGCGACTTTCTTTCCCTCGGATCTTCGGTTTTCTCACGCAATATTT
TATTTTTTAGCCTCATCGACCACCGCCCGCCCCTGGCTCCGCCCCTGGCT
CCTCTACGTACATACGATAGGCCCGCTTTGGGTAAGCGAGTGCTAGTAGA
GTTCGAGGGTGGTTCCTTTTACGCCGGCACGATTAACACGTCCGGGGACA
GCGAGAAAGACCGCAACCACTCGAAGGGGAAATGGGGCGTGCTGTTCGAT
GACTGCACAAGGGATCGCTTCGCCGACGGAGCTACCGATGGTAATATTTT
GTTGGGTTAACCGCGTTCAAGTTTGTATGCAAGAAGCTGTCCATCGTTCC
ATCGAGCTGGTTTGAGGATTCTACTCGTCGTGGTCCAGAGCTATGGTTGT
GCTCAAGGTCGGTTTTTATCGGTGTAGGTGATCCGTCAAAAGGGACCCCC
CTGCTCATCGTCTCCAGCTTTCGTGGAGTCAGGCGGGCATTAGTCCCTGG
AAAGCATAATTTGTCGTATACGATGGAGAACCCGATTCCATAAGTGTGTG
TTCTGCGTTGTCGAAATCATGGGCAAGTGGATGATGAGAACCTGTTCGAG
CCGCCTGCCGTGTGTTTTTACCCCTATGGTCTGCTCCGTCGACGTTAGCT
CCAGCCCTTTACCCTGGCGTGCCTAGCAGCTAGCGAGCGCTCTGAACCTG
AGCCCCTCGAGTCGATGTTGTGCCGTCGTTGTGCTTTGGTACGCTACCCT
CTCGATCGAGCAGTTATGATATCGAACCGATCGAAGCCGACCGAGTTCAG
CCGGGAGCTTTACGACTACTACCTCCGGCACCAGAACGGCCGCAAGCTCC
TGGAGGGCGTGAAGGTTGTCCCCGAGACAAAGAGAGACGAGGCTGCGCGT
GTGGCCGGGGAAACTGAGGTAATATTGTTGTTGTGGTTGTTTGCACGGCC
AATAACTTGTTTCCGGCGTGTGCGTTCGGTGGGCGTGGCGGTCGATTTTT
GGCTGAGCGTTCGCATGCACGTGCCTACGAAAGGTAGCGCGTCAGCAGAG
AAAGTTGTTGGACGCAGGACGCGAAGGTCATTTGTGTTCCTCGGCCCTCT
GTGGCTGAAGCGTTTGAAGGATGCCTCGGATAGCCAAATGGGTCAAAACA
ATCTGCTAATTGCTGAAGACTTCTTTGGGCTCAATCCCCTACAACGAGAG
TGCCCATTTTTGCTCTTCTTGTCGCGCTGTACTTCGAAGTATACCGAATT
TTTCGTCCAACACCACTACACAGCAACACGTCCTTTTTGGCTGCCTCCCG
CCGGCTCCCGTGCTCCGCTTTTGTTCCGGCGCTGGCAGCAGCAGGGCGCA
GCGGGAAAGGCGAGCGCGCACAAGGAGAAGGGGGCCGGTGCCGGAAAACA
CAGGCGCCCTAAGCCGTGGGAGAACAATAAACCACGGAAGGAGTCGCCTG
CAACCGACCGGGACGAAGTCGGCGGTGCCTCTGGTAAGCTCAAGCACGCA
ACGGCAGGGGAGAAGTTGGCCGGGACCGGCCCCGAGGCAACTAGCGCGAG
CGAGGCCCGCACCTCGGGTGCCTCGGGGGGGAAGAACAAACGCAAGCACT
CGATTGCGAGCGAGGACGAAGAAACGGACATCGAGCTGGAGGAGCAAGAG
ACTGGTGCGACCCACCGGAAGGGAAAAGGAAAGAGCGGTGGTGCAGCCGA
TGATGGGGGCGGTGGTGTCGGCGATCCCGGCAAGAAAAAAGGGGCTGGCG
ACAGCGGCGGCGGCTGCGGAGGCATCACGACCAGCAGCAGCAAGAACAGT
GCGGGAACGACAATCAAGTACAAGAGCAACGACCCCGTCGGCGCGGTCGG
AACCGGCAGCGGCGACGAGGACGGCTACCTGATGGCCACAGTAAGTGCAA
TATCGAAAAAGCCGAAGACCAGCGGCGGCGGCCACAGCAGTGGAGTGAAA
AATGTCTCCCACAAGATGGCATCGAAGGCGGCGAAGCAGAAAGGAGGGGG
TGGTGGCGGTAGCGGCGGTGGTGAAGGAGGAGGCGAGGACAGAGGCGAGG
ACAGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:642024..650678-

>mRNA_C-linearis_contig82.16015.1 ID=mRNA_C-linearis_contig82.16015.1|Name=mRNA_C-linearis_contig82.16015.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4752bp|location=Sequence derived from alignment at C-linearis_contig82:642024..650678- (Chordaria linearis ClinC8C monoicous)
ATGCCTCGCCGGGCGGCGAAAGCCACCCCCGCGGGGAAGCATCGAGACAA
AGACGAGAATGGCGAAGGACGGGGCAAGCAGGCGCTGACCTTGCCTAGGG
CGGGCGATACTGCGCGACAGATAGATGCCTCGCCGGGCGGCGAAAGCCAC
CCCCGCGGGGAAGCATCGAGACAAAGACGAGAATGGCGAAGGACGGGGCA
AGCAGGCGCTGACCTTGCCTAGGGCGGGCGATACTGCGCGACAGATAGGA
ATGGGTTTCTTGAAGATGGCCGACGTAGTCGACGAGTGCCCGCCTCTGGC
GAAGCTTTTCGAGGGGGGCCTGGAGCGTTTCCAAGAAGTATTTCAGGAAT
GGGTTTCTTGAAGATGGCCGACGTAGTCGACGAGTGCCCGCCTCTGGCGA
AGCTTTTCGAGGGGGGCCTGGAGCGTTTCCAAGAAGTATTTCAGGCACCT
GGTGGGCTGTTGGCGGGACCTGGGGCCGGGTCGAGACCGGGCGCCTCAGA
CCCCCAAGACCACACCAAGGCGCCCGCTGGGGCGAAAAGGAAGCTCATCG
GAGGACCCGTGGACATCGAAGGTGGAGGCGGAGGTGGAAGCGGAGGCGCC
GGCGGACGGGGGGGTGCGACAGGCGCTGGGGGGTCGGGGAGTTCTCCGCC
GCAGAAGGGCGTTTCTTGGTCGGAGGAAGGGGCGAGGGGCCGGAGGGGTA
CGAGGGATGCGAGATCGAACATCGAGGCACCTGGTGGGCTGTTGGCGGGA
CCTGGGGCCGGGTCGAGACCGGGCGCCTCAGACCCCCAAGACCACACCAA
GGCGCCCGCTGGGGCGAAAAGGAAGCTCATCGGAGGACCCGTGGACATCG
AAGGTGGAGGCGGAGGTGGAAGCGGAGGCGCCGGCGGACGGGGGGGTGCG
ACAGGCGCTGGGGGGTCGGGGAGTTCTCCGCCGCAGAAGGGCGTTTCTTG
GTCGGAGGAAGGGGCGAGGGGCCGGAGGGGTACGAGGGATGCGAGATCGA
ACATCGAGGCCGAAGCATGGCCGGGACTAGAACAAGCACTGAAGGCGTCA
AAGCAGGACATGGCAGCGTCCGCCGGTGGGCGGGGTGGTAGCAAAGGCGT
GGGGGTGAGGAGCCGCCCGGCGGACCAGAAGGCCAAGGACGAGTCCGCCA
AGCAAAAGCGAAAGCCGAAGCATGGCCGGGACTAGAACAAGCACTGAAGG
CGTCAAAGCAGGACATGGCAGCGTCCGCCGGTGGGCGGGGTGGTAGCAAA
GGCGTGGGGGTGAGGAGCCGCCCGGCGGACCAGAAGGCCAAGGACGAGTC
CGCCAAGCAAAAGCGAAAGCCTTCACCGCCGGTGCCAGCAGCATTCGGGT
TCCCGGCGGCCCCACCTCCGCGCTCGGCGGCGGTGAACGCTCTCCAACGA
ATCGCCGCTGCCGGCACGCCGCGGAAACCGACACACCTCGAACCGAAATC
GGCAGCAGCGGGAGCCGATGGGGCGGCGGGTTTTGCATCAGCCGGCGGTA
AAAATACCAACAGTCAGAAGGAGGCGGGGGCAGAAGAAGGTGGAGGAAAC
AAATCGGAAACATCGATCACATTGGCTGCATCGCGTTCGGTGACGGCGGC
GGCGGCGGGGAAGAAACCAACTAAAGGTGGCCCCGGTGGCTCTAGGGCGA
CGCCTGCACCCGAAGTGGGGGGGGCGCACGGAGACGGTGCTTCGCAGGGG
TCCGGAGGGTCAGGGAAGCTAAAGGGCGGAGGGACGGCTCTGAGCGAGTT
GGCTGGAGGCCCCGGCAAGAGGTGCACGACTGGGGAGGACATGCTGAGCA
GGCTAGACGCGAGGGTTTTCCGGTTCGTGGAGGCGGGTGGTTGCCGGGAG
GAGGGGTGCGAGCTCCGGGACGAAGCTCACTGCCACCGCGGCCCAGGATG
CGACTGCACGAGGCCTTCACCGCCGGTGCCAGCAGCATTCGGGTTCCCGG
CGGCCCCACCTCCGCGCTCGGCGGCGGTGAACGCTCTCCAACGAATCGCC
GCTGCCGGCACGCCGCGGAAACCGACACACCTCGAACCGAAATCGGCAGC
AGCGGGAGCCGATGGGGCGGCGGGTTTTGCATCAGCCGGCGGTAAAAATA
CCAACAGTCAGAAGGAGGCGGGGGCAGAAGAAGGTGGAGGAAACAAATCG
GAAACATCGATCACATTGGCTGCATCGCGTTCGGTGACGGCGGCGGCGGC
GGGGAAGAAACCAACTAAAGGTGGCCCCGGTGGCTCTAGGGCGACGCCTG
CACCCGAAGTGGGGGGGGCGCACGGAGACGGTGCTTCGCAGGGGTCCGGA
GGGTCAGGGAAGCTAAAGGGCGGAGGGACGGCTCTGAGCGAGTTGGCTGG
AGGCCCCGGCAAGAGGTGCACGACTGGGGAGGACATGCTGAGCAGGCTAG
ACGCGAGGGTTTTCCGGTTCGTGGAGGCGGGTGGTTGCCGGGAGGAGGGG
TGCGAGCTCCGGGACGAAGCTCACTGCCACCGCGGCCCAGGATGCGACTG
CACGAGAAACAACGACACGTACAGGTGGCCTTCCGACCGGGAGAAGATAA
AGCGGCACCAGGCGAGGCACCAGGAGTGGAGCACCAAAAACAACGACACG
TACAGGTGGCCTTCCGACCGGGAGAAGATAAAGCGGCACCAGGCGAGGCA
CCAGGAGTGGAGCACCAAGCCCGCTTTGGGTAAGCGAGTGCTAGTAGAGT
TCGAGGGTGGTTCCTTTTACGCCGGCACGATTAACACGTCCGGGGACAGC
GAGAAAGACCGCAACCACTCGAAGGGGAAATGGGGCGTGCTGTTCGATGA
CTGCACAAGGGATCGCTTCGCCGACGGAGCTACCGATGGCCCGCTTTGGG
TAAGCGAGTGCTAGTAGAGTTCGAGGGTGGTTCCTTTTACGCCGGCACGA
TTAACACGTCCGGGGACAGCGAGAAAGACCGCAACCACTCGAAGGGGAAA
TGGGGCGTGCTGTTCGATGACTGCACAAGGGATCGCTTCGCCGACGGAGC
TACCGATGTTATGATATCGAACCGATCGAAGCCGACCGAGTTCAGCCGGG
AGCTTTACGACTACTACCTCCGGCACCAGAACGGCCGCAAGCTCCTGGAG
GGCGTGAAGGTTGTCCCCGAGACAAAGAGAGACGAGGCTGCGCGTGTGGC
CGGGGAAACTGAGTTATGATATCGAACCGATCGAAGCCGACCGAGTTCAG
CCGGGAGCTTTACGACTACTACCTCCGGCACCAGAACGGCCGCAAGCTCC
TGGAGGGCGTGAAGGTTGTCCCCGAGACAAAGAGAGACGAGGCTGCGCGT
GTGGCCGGGGAAACTGAGCAGCAGGGCGCAGCGGGAAAGGCGAGCGCGCA
CAAGGAGAAGGGGGCCGGTGCCGGAAAACACAGGCGCCCTAAGCCGTGGG
AGAACAATAAACCACGGAAGGAGTCGCCTGCAACCGACCGGGACGAAGTC
GGCGGTGCCTCTGGTAAGCTCAAGCACGCAACGGCAGGGGAGAAGTTGGC
CGGGACCGGCCCCGAGGCAACTAGCGCGAGCGAGGCCCGCACCTCGGGTG
CCTCGGGGGGGAAGAACAAACGCAAGCACTCGATTGCGAGCGAGGACGAA
GAAACGGACATCGAGCTGGAGGAGCAAGAGACTGGTGCGACCCACCGGAA
GGGAAAAGGAAAGAGCGGTGGTGCAGCCGATGATGGGGGCGGTGGTGTCG
GCGATCCCGGCAAGAAAAAAGGGGCTGGCGACAGCGGCGGCGGCTGCGGA
GGCATCACGACCAGCAGCAGCAAGAACAGTGCGGGAACGACAATCAAGTA
CAAGAGCAACGACCCCGTCGGCGCGGTCGGAACCGGCAGCGGCGACGAGG
ACGGCTACCTGATGGCCACAGTAAGTGCAATATCGAAAAAGCCGAAGACC
AGCGGCGGCGGCCACAGCAGTGGAGTGAAAAATGTCTCCCACAAGATGGC
ATCGAAGGCGGCGAAGCAGAAAGGAGGGGGTGGTGGCGGTAGCGGCGGTG
GTGAAGGAGGAGGCGAGGACAGAGGCGAGGACAGCCAGCAGGGCGCAGCG
GGAAAGGCGAGCGCGCACAAGGAGAAGGGGGCCGGTGCCGGAAAACACAG
GCGCCCTAAGCCGTGGGAGAACAATAAACCACGGAAGGAGTCGCCTGCAA
CCGACCGGGACGAAGTCGGCGGTGCCTCTGGTAAGCTCAAGCACGCAACG
GCAGGGGAGAAGTTGGCCGGGACCGGCCCCGAGGCAACTAGCGCGAGCGA
GGCCCGCACCTCGGGTGCCTCGGGGGGGAAGAACAAACGCAAGCACTCGA
TTGCGAGCGAGGACGAAGAAACGGACATCGAGCTGGAGGAGCAAGAGACT
GGTGCGACCCACCGGAAGGGAAAAGGAAAGAGCGGTGGTGCAGCCGATGA
TGGGGGCGGTGGTGTCGGCGATCCCGGCAAGAAAAAAGGGGCTGGCGACA
GCGGCGGCGGCTGCGGAGGCATCACGACCAGCAGCAGCAAGAACAGTGCG
GGAACGACAATCAAGTACAAGAGCAACGACCCCGTCGGCGCGGTCGGAAC
CGGCAGCGGCGACGAGGACGGCTACCTGATGGCCACAGTAAGTGCAATAT
CGAAAAAGCCGAAGACCAGCGGCGGCGGCCACAGCAGTGGAGTGAAAAAT
GTCTCCCACAAGATGGCATCGAAGGCGGCGAAGCAGAAAGGAGGGGGTGG
TGGCGGTAGCGGCGGTGGTGAAGGAGGAGGCGAGGACAGAGGCGAGGACA
GC
back to top