mRNA_C-linearis_contig80.15911.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15911.1
Unique NamemRNA_C-linearis_contig80.15911.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig80.15911.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 629 bits (1622), Expect = 4.780e-219
Identity = 361/497 (72.64%), Postives = 393/497 (79.07%), Query Frame = 1
Query:  205 MRALIAFLGTCPDHLASLRRLLPPLLRVADGDKDEWVQVVCGLVRQKLLPSEGGDSAGVGEGAAAPKSDFVLRKTAREVLERAKQNILERTGNGEGVADGG---GGSSSGEGRHMREAPYFGPLEERYVGRKQQPQKRDFVNAHFSVKYDFVSEFSEDLASNVGGASNTSSSPTGGGASVAAA-LASRAGQGGLLKAPGSLIPQPTPAAPNLAQARRVSLAAAVDPSAGSDGLRRTSKPLALSRNYAGLQPGSARGTSGVGSVRGVRAGXXXXXXXXXXGNRAGLMMINVDELQAIDTEKQSAREKAKGKPGRKKARVEAGDEEKATGTEPPTETTTSGDQL----------PDGQAPDKASGKGKAAESEAPVVKSSEPADGPAPIPQQGEIEAVAAMMVLGVGGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKTPKGSSQERIKYHEEVNPGADGEEMVRVTSYIRLHYETWVWDRIHKKKRIKS 1653
            M+ALIAFLG   +HLASL  +LP LL +AD DKDEWVQVV GLVRQKLLP +  DS  VG+ A   +SDFVLRKT REVLERAKQN+ ER GNG+    GG   GG+   + R MREAPYFGPLEERYV RKQQP+K++F NAHFSVKYDFV EFSEDLASNVGG SNTSSSPTGGGASVAAA LASR GQGGLLK PGS  P PTPAAPNLAQARRVSLAA VDPSAGSDGLRRTSKPLALSRNY GLQ GS R +SGVG  RG R G            +AGLMMINVDELQAI  EKQSAREKAKGKPGRKKA++E G E+   G EP T  + +G Q            DGQ P+ ASG+GK A+ +AP  K S  ADGP P+PQQGEIEAVAAMMVLGV GGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKK P+GS QER+KYHEEV+PGADGE M+RVTSYIRL YETWVWDR+HKKKR+KS
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNR--DTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASP------GKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKKAKPKAPA-KPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGE-MMRVTSYIRLDYETWVWDRVHKKKRVKS 487          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV59_ECTSI4.780e-21972.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:664102..667451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Exons2
Model size2041
Cds size1596
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15911.1prot_C-linearis_contig80.15911.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 664487..667391 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.6054053-UTR-C-linearis_contig80:664101..6644861622930594.6054053-UTR-C-linearis_contig80:664101..664486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 664102..664486 -
1690881150.6280413-UTR-C-linearis_contig80:664101..6644861690881150.6280413-UTR-C-linearis_contig80:664101..664486Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 664102..664486 -
1622930594.6597972-UTR-C-linearis_contig80:667391..6674511622930594.6597972-UTR-C-linearis_contig80:667391..667451Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 667392..667451 -
1690881150.6733353-UTR-C-linearis_contig80:667391..6674511690881150.6733353-UTR-C-linearis_contig80:667391..667451Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 667392..667451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.6230288-CDS-C-linearis_contig80:664486..6659381622930594.6230288-CDS-C-linearis_contig80:664486..665938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 664487..665938 -
1690881150.6509008-CDS-C-linearis_contig80:664486..6659381690881150.6509008-CDS-C-linearis_contig80:664486..665938Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 664487..665938 -
1622930594.6423013-CDS-C-linearis_contig80:667247..6673911622930594.6423013-CDS-C-linearis_contig80:667247..667391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 667248..667391 -
1690881150.6627293-CDS-C-linearis_contig80:667247..6673911690881150.6627293-CDS-C-linearis_contig80:667247..667391Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 667248..667391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15911.1

>prot_C-linearis_contig80.15911.1 ID=prot_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=532bp
MPTPNHIRAFEVRLRANWSSEDVVQMLTPDFVESVLLPGFAALEPTIKMR
ALIAFLGTCPDHLASLRRLLPPLLRVADGDKDEWVQVVCGLVRQKLLPSE
GGDSAGVGEGAAAPKSDFVLRKTAREVLERAKQNILERTGNGEGVADGGG
GSSSGEGRHMREAPYFGPLEERYVGRKQQPQKRDFVNAHFSVKYDFVSEF
SEDLASNVGGASNTSSSPTGGGASVAAALASRAGQGGLLKAPGSLIPQPT
PAAPNLAQARRVSLAAAVDPSAGSDGLRRTSKPLALSRNYAGLQPGSARG
TSGVGSVRGVRAGGGGGGGGGGAGNRAGLMMINVDELQAIDTEKQSAREK
AKGKPGRKKARVEAGDEEKATGTEPPTETTTSGDQLPDGQAPDKASGKGK
AAESEAPVVKSSEPADGPAPIPQQGEIEAVAAMMVLGVGGGGEDAETSYL
PEALTKLLENANSLRPEGKAKLESFFQKKTPKGSSQERIKYHEEVNPGAD
GEEMVRVTSYIRLHYETWVWDRIHKKKRIKS*
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mRNA from alignment at C-linearis_contig80:664102..667451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15911.1 ID=mRNA_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3350bp|location=Sequence derived from alignment at C-linearis_contig80:664102..667451- (Chordaria linearis ClinC8C monoicous)
CACGTGTGCCTCCTTGCGCTTCTGCTCGCTGCTTCTCGTCCAGAGAGACG TGAGAAAGCTATGCCAACTCCAAATCATATTCGTGCTTTCGAAGTAAGGC TGCGGGCCAATTGGAGCAGCGAAGATGTCGTGCAAATGCTCACACCGGAC TTCGTGGAATCCGTGTTGCTGCCTGGTTTTGCCGCTCTTGAACCGACCAT CAAGGTAAGACACCCCGCCTCCCTTCCGTTGGTGGGGGTGGCTTTCGATC GCACTCAGCACGGCGCGGTTCGAAATACCCAGCTACACGGGCTGTGTGCC TTAAAGCTCCTAAATCAGCTCTCGAAATGCAGTCTCTAGTGTTGCAACTC ACCAAGCGTATCATACGCTGTCACCTGTGATCACAACGTCTTCTTCTGTC TTTACCATCTCAGGCAGGTGATGCAGTTCTATCGTCTGTTCCTCACAATA ACACTCAGCATATGAGCAGGATGGGATACAGGTGTTGACGAAAACACGGT CAAATCACCGGCATCCATCAAGACAGATGCGTCGGTTCAACCCCCCCCTG TCTCCGCATCGGTTCACGAACACAGTCAGTGCTGCTGCTTCCGCTCGTAA CTGCGGACGCCTTTTCAGATGTTCGGTTCTTGTTGATTTCAATTCGCATA CAACCCAACAACCACCCTCATGGACAGTGTGCAGAGAGAGGTACAAGTAC GCCCAGTCGTGGTTCGTATGCTCTACCTCGCTGCCGTGACCTACAGGACG AATCGATCTCACGTGCAGGTCGTCTTATCTCACGGAGTACGCACCCAAAC AGCTGTTTCCTCCTATTGAGACTGACTTCAACACTGCTGTATGATCGAGC CTCAGACAAAGAATCATTTAGTGTATGCAGTTGTTGCGAGACAAATCGCA GTTGTGATGCAGATTCGGCAGAGCAACCTTAGGAGGGGCACGCACGCCGT CTTGACACACCACCAGTATTCTTCAGGCCTCGCGAGTCAGGCCTCCCTTT GGGCGCAAGTACAAATGCCCACGTACATGGAGTCAACCGTTGTCTCTTTG TTCATTCTTAAATGGCAGCGCAAGGACCTGCTCTTCTTGGCGTACATGTA ACGTTCAGGTCGCCGTTGGGTTTAGTTGGGTGATGCGCGGCTGTTCGCAT TTCCCTATCCATGCACGAAGCGCCTAGGTATCGTTGTCCTGTAGTGCACT ACTATGCTTTCAAGACCATAGAGTTCCCGTTAGCACGAACGCTCTCCCTC CGTTCCAAACTTCAACCAACTATGCACCTTCTCTTCAGGCATGTCATACG TTATGGCTGGTTCCCATGTGCTGGAGGCCGGCATGTCGGCATATCCCCAT TGGTAGCCGCACCCCGGTGCGTAGTATACCCCGAAGCCCGCCCCAAAACA CTTGCCTTTGAAGAGTTTATTGCTGCTCTGATGCCCTTACCGTTCACGTT ACCCCAAAATAACCGCTACTCTCTCTACGCCTTCCCTCTTTCTCTTGCTG GTGGGTGTGATAGATGAGGGCGCTGATCGCCTTCCTAGGAACTTGCCCGG ACCATCTTGCATCCCTTCGTCGTCTTCTACCCCCGCTTCTGAGAGTTGCG GACGGCGACAAAGACGAATGGGTTCAGGTGGTATGCGGCCTAGTACGTCA AAAGCTCTTGCCCAGCGAAGGGGGGGATTCGGCCGGCGTCGGCGAAGGTG CAGCAGCCCCAAAGAGTGATTTTGTCTTGCGCAAGACTGCCAGGGAAGTT CTCGAGCGGGCAAAACAGAACATATTGGAGCGCACAGGCAATGGGGAAGG GGTCGCGGACGGCGGCGGCGGCAGCAGCAGCGGCGAAGGTCGACATATGC GAGAAGCGCCGTATTTTGGCCCCTTGGAGGAGAGGTACGTCGGCCGCAAG CAGCAACCCCAAAAGAGGGATTTCGTCAATGCGCACTTCAGCGTCAAGTA TGACTTTGTCAGCGAATTCTCGGAAGACCTCGCTTCGAACGTCGGTGGCG CCTCTAATACGTCTTCGTCTCCAACAGGAGGGGGTGCCTCGGTCGCCGCA GCGCTCGCGTCTAGGGCAGGTCAAGGGGGATTGCTAAAGGCCCCCGGCTC TTTGATACCCCAGCCCACTCCCGCGGCGCCCAACCTAGCGCAAGCGCGAA GGGTCTCGCTTGCTGCGGCGGTAGACCCATCTGCAGGATCCGATGGCCTC CGCAGGACCAGCAAGCCCTTGGCACTATCTCGGAATTACGCCGGGCTTCA GCCTGGTTCGGCGCGGGGGACTTCGGGTGTCGGGAGCGTGCGTGGCGTGC GCGCGGGGGGCGGCGGGGGCGGAGGCGGCGGCGGTGCCGGCAATAGAGCG GGCTTGATGATGATCAATGTAGACGAGCTGCAGGCAATAGACACAGAAAA ACAGTCTGCGCGGGAAAAGGCGAAAGGGAAACCCGGCAGAAAGAAGGCCA GGGTTGAAGCGGGCGACGAGGAAAAGGCCACCGGCACCGAGCCTCCCACC GAGACAACGACAAGTGGGGATCAACTACCGGACGGACAAGCACCGGACAA GGCGAGTGGCAAGGGGAAGGCGGCTGAGTCCGAGGCACCAGTAGTGAAAT CTTCGGAACCAGCGGATGGGCCAGCACCTATCCCGCAGCAGGGCGAGATT GAGGCGGTCGCGGCGATGATGGTCCTCGGAGTCGGCGGGGGGGGTGAAGA CGCAGAGACTTCCTATCTCCCAGAAGCGCTGACGAAGCTCTTGGAAAATG CCAACTCGCTCAGACCGGAAGGCAAGGCCAAGCTGGAGAGTTTTTTCCAG AAGAAAACCCCGAAAGGGTCGTCGCAGGAAAGGATCAAGTATCACGAGGA GGTTAACCCTGGGGCGGACGGGGAGGAGATGGTGCGGGTGACAAGCTACA TTCGCCTGCATTACGAGACCTGGGTCTGGGATAGGATTCACAAGAAGAAG CGTATCAAATCGTGACTTCGGTAGCTTGTTGTGCGAGAGTAGGTGAGAGC GGGAAACACAGATCCTGCTCGTGTATGTGTTGTAGTCCGCCCACTCTCTA ACCAGCGCGGGACCAGCGCGGGCGCTGCAACCTTTAGTTTCGTTGATTAA GGTAATTTCGTTGACTTGGAGTGTAATTTAGGGAAGAGCTAGATATGCAT GTCGTAGGATGTGAATCCCTGCTGCTGCTGTTGTTGCGCGTCTCGGGTTG GTCGACAGGATGCACCTGGTCGTCTGTTACGGGTTTCTTCACACATTTTC ACGGCGGCAAGTGTTTTTCTCGTGTCTCATGTTCTCGTCAAATGTGGGCA CCAGCGCCGATTGCGAGGAAATAACCAGTTTTTTTTACTCTGGATGCTAT
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Coding sequence (CDS) from alignment at C-linearis_contig80:664102..667451-

>mRNA_C-linearis_contig80.15911.1 ID=mRNA_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3192bp|location=Sequence derived from alignment at C-linearis_contig80:664102..667451- (Chordaria linearis ClinC8C monoicous)
ATGCCAACTCCAAATCATATTCGTGCTTTCGAAGTAAGGCTGCGGGCCAA
TTGGAGCAGCGAAGATGTCGTGCAAATGCTCACACCGGACTTCGTGGAAT
CCGTGTTGCTGCCTGGTTTTGCCGCTCTTGAACCGACCATCAAGATGCCA
ACTCCAAATCATATTCGTGCTTTCGAAGTAAGGCTGCGGGCCAATTGGAG
CAGCGAAGATGTCGTGCAAATGCTCACACCGGACTTCGTGGAATCCGTGT
TGCTGCCTGGTTTTGCCGCTCTTGAACCGACCATCAAGATGAGGGCGCTG
ATCGCCTTCCTAGGAACTTGCCCGGACCATCTTGCATCCCTTCGTCGTCT
TCTACCCCCGCTTCTGAGAGTTGCGGACGGCGACAAAGACGAATGGGTTC
AGGTGGTATGCGGCCTAGTACGTCAAAAGCTCTTGCCCAGCGAAGGGGGG
GATTCGGCCGGCGTCGGCGAAGGTGCAGCAGCCCCAAAGAGTGATTTTGT
CTTGCGCAAGACTGCCAGGGAAGTTCTCGAGCGGGCAAAACAGAACATAT
TGGAGCGCACAGGCAATGGGGAAGGGGTCGCGGACGGCGGCGGCGGCAGC
AGCAGCGGCGAAGGTCGACATATGCGAGAAGCGCCGTATTTTGGCCCCTT
GGAGGAGAGGTACGTCGGCCGCAAGCAGCAACCCCAAAAGAGGGATTTCG
TCAATGCGCACTTCAGCGTCAAGTATGACTTTGTCAGCGAATTCTCGGAA
GACCTCGCTTCGAACGTCGGTGGCGCCTCTAATACGTCTTCGTCTCCAAC
AGGAGGGGGTGCCTCGGTCGCCGCAGCGCTCGCGTCTAGGGCAGGTCAAG
GGGGATTGCTAAAGGCCCCCGGCTCTTTGATACCCCAGCCCACTCCCGCG
GCGCCCAACCTAGCGCAAGCGCGAAGGGTCTCGCTTGCTGCGGCGGTAGA
CCCATCTGCAGGATCCGATGGCCTCCGCAGGACCAGCAAGCCCTTGGCAC
TATCTCGGAATTACGCCGGGCTTCAGCCTGGTTCGGCGCGGGGGACTTCG
GGTGTCGGGAGCGTGCGTGGCGTGCGCGCGGGGGGCGGCGGGGGCGGAGG
CGGCGGCGGTGCCGGCAATAGAGCGGGCTTGATGATGATCAATGTAGACG
AGCTGCAGGCAATAGACACAGAAAAACAGTCTGCGCGGGAAAAGGCGAAA
GGGAAACCCGGCAGAAAGAAGGCCAGGGTTGAAGCGGGCGACGAGGAAAA
GGCCACCGGCACCGAGCCTCCCACCGAGACAACGACAAGTGGGGATCAAC
TACCGGACGGACAAGCACCGGACAAGGCGAGTGGCAAGGGGAAGGCGGCT
GAGTCCGAGGCACCAGTAGTGAAATCTTCGGAACCAGCGGATGGGCCAGC
ACCTATCCCGCAGCAGGGCGAGATTGAGGCGGTCGCGGCGATGATGGTCC
TCGGAGTCGGCGGGGGGGGTGAAGACGCAGAGACTTCCTATCTCCCAGAA
GCGCTGACGAAGCTCTTGGAAAATGCCAACTCGCTCAGACCGGAAGGCAA
GGCCAAGCTGGAGAGTTTTTTCCAGAAGAAAACCCCGAAAGGGTCGTCGC
AGGAAAGGATCAAGTATCACGAGGAGGTTAACCCTGGGGCGGACGGGGAG
GAGATGGTGCGGGTGACAAGCTACATTCGCCTGCATTACGAGACCTGGGT
CTGGGATAGGATTCACAAGAAGAAGCGTATCAAATCGTGAATGAGGGCGC
TGATCGCCTTCCTAGGAACTTGCCCGGACCATCTTGCATCCCTTCGTCGT
CTTCTACCCCCGCTTCTGAGAGTTGCGGACGGCGACAAAGACGAATGGGT
TCAGGTGGTATGCGGCCTAGTACGTCAAAAGCTCTTGCCCAGCGAAGGGG
GGGATTCGGCCGGCGTCGGCGAAGGTGCAGCAGCCCCAAAGAGTGATTTT
GTCTTGCGCAAGACTGCCAGGGAAGTTCTCGAGCGGGCAAAACAGAACAT
ATTGGAGCGCACAGGCAATGGGGAAGGGGTCGCGGACGGCGGCGGCGGCA
GCAGCAGCGGCGAAGGTCGACATATGCGAGAAGCGCCGTATTTTGGCCCC
TTGGAGGAGAGGTACGTCGGCCGCAAGCAGCAACCCCAAAAGAGGGATTT
CGTCAATGCGCACTTCAGCGTCAAGTATGACTTTGTCAGCGAATTCTCGG
AAGACCTCGCTTCGAACGTCGGTGGCGCCTCTAATACGTCTTCGTCTCCA
ACAGGAGGGGGTGCCTCGGTCGCCGCAGCGCTCGCGTCTAGGGCAGGTCA
AGGGGGATTGCTAAAGGCCCCCGGCTCTTTGATACCCCAGCCCACTCCCG
CGGCGCCCAACCTAGCGCAAGCGCGAAGGGTCTCGCTTGCTGCGGCGGTA
GACCCATCTGCAGGATCCGATGGCCTCCGCAGGACCAGCAAGCCCTTGGC
ACTATCTCGGAATTACGCCGGGCTTCAGCCTGGTTCGGCGCGGGGGACTT
CGGGTGTCGGGAGCGTGCGTGGCGTGCGCGCGGGGGGCGGCGGGGGCGGA
GGCGGCGGCGGTGCCGGCAATAGAGCGGGCTTGATGATGATCAATGTAGA
CGAGCTGCAGGCAATAGACACAGAAAAACAGTCTGCGCGGGAAAAGGCGA
AAGGGAAACCCGGCAGAAAGAAGGCCAGGGTTGAAGCGGGCGACGAGGAA
AAGGCCACCGGCACCGAGCCTCCCACCGAGACAACGACAAGTGGGGATCA
ACTACCGGACGGACAAGCACCGGACAAGGCGAGTGGCAAGGGGAAGGCGG
CTGAGTCCGAGGCACCAGTAGTGAAATCTTCGGAACCAGCGGATGGGCCA
GCACCTATCCCGCAGCAGGGCGAGATTGAGGCGGTCGCGGCGATGATGGT
CCTCGGAGTCGGCGGGGGGGGTGAAGACGCAGAGACTTCCTATCTCCCAG
AAGCGCTGACGAAGCTCTTGGAAAATGCCAACTCGCTCAGACCGGAAGGC
AAGGCCAAGCTGGAGAGTTTTTTCCAGAAGAAAACCCCGAAAGGGTCGTC
GCAGGAAAGGATCAAGTATCACGAGGAGGTTAACCCTGGGGCGGACGGGG
AGGAGATGGTGCGGGTGACAAGCTACATTCGCCTGCATTACGAGACCTGG
GTCTGGGATAGGATTCACAAGAAGAAGCGTATCAAATCGTGA
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