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Homology
BLAST of mRNA_C-linearis_contig80.15911.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI) HSP 1 Score: 629 bits (1622), Expect = 4.780e-219 Identity = 361/497 (72.64%), Postives = 393/497 (79.07%), Query Frame = 1
Query: 205 MRALIAFLGTCPDHLASLRRLLPPLLRVADGDKDEWVQVVCGLVRQKLLPSEGGDSAGVGEGAAAPKSDFVLRKTAREVLERAKQNILERTGNGEGVADGG---GGSSSGEGRHMREAPYFGPLEERYVGRKQQPQKRDFVNAHFSVKYDFVSEFSEDLASNVGGASNTSSSPTGGGASVAAA-LASRAGQGGLLKAPGSLIPQPTPAAPNLAQARRVSLAAAVDPSAGSDGLRRTSKPLALSRNYAGLQPGSARGTSGVGSVRGVRAGXXXXXXXXXXGNRAGLMMINVDELQAIDTEKQSAREKAKGKPGRKKARVEAGDEEKATGTEPPTETTTSGDQL----------PDGQAPDKASGKGKAAESEAPVVKSSEPADGPAPIPQQGEIEAVAAMMVLGVGGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKTPKGSSQERIKYHEEVNPGADGEEMVRVTSYIRLHYETWVWDRIHKKKRIKS 1653
M+ALIAFLG +HLASL +LP LL +AD DKDEWVQVV GLVRQKLLP + DS VG+ A +SDFVLRKT REVLERAKQN+ ER GNG+ GG GG+ + R MREAPYFGPLEERYV RKQQP+K++F NAHFSVKYDFV EFSEDLASNVGG SNTSSSPTGGGASVAAA LASR GQGGLLK PGS P PTPAAPNLAQARRVSLAA VDPSAGSDGLRRTSKPLALSRNY GLQ GS R +SGVG RG R G +AGLMMINVDELQAI EKQSAREKAKGKPGRKKA++E G E+ G EP T + +G Q DGQ P+ ASG+GK A+ +AP K S ADGP P+PQQGEIEAVAAMMVLGV GGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKK P+GS QER+KYHEEV+PGADGE M+RVTSYIRL YETWVWDR+HKKKR+KS
Sbjct: 1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGNGKQRVVGGSTIGGNR--DTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASP------GKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKKAKPKAPA-KPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGE-MMRVTSYIRLDYETWVWDRVHKKKRVKS 487
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_007450.1 |
| Exons | 2 |
| Model size | 2041 |
| Cds size | 1596 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930594.6054053-UTR-C-linearis_contig80:664101..664486 | 1622930594.6054053-UTR-C-linearis_contig80:664101..664486 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig80 664102..664486 - |
| 1690881150.6280413-UTR-C-linearis_contig80:664101..664486 | 1690881150.6280413-UTR-C-linearis_contig80:664101..664486 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig80 664102..664486 - |
| 1622930594.6597972-UTR-C-linearis_contig80:667391..667451 | 1622930594.6597972-UTR-C-linearis_contig80:667391..667451 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig80 667392..667451 - |
| 1690881150.6733353-UTR-C-linearis_contig80:667391..667451 | 1690881150.6733353-UTR-C-linearis_contig80:667391..667451 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig80 667392..667451 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930594.6230288-CDS-C-linearis_contig80:664486..665938 | 1622930594.6230288-CDS-C-linearis_contig80:664486..665938 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig80 664487..665938 - |
| 1690881150.6509008-CDS-C-linearis_contig80:664486..665938 | 1690881150.6509008-CDS-C-linearis_contig80:664486..665938 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig80 664487..665938 - |
| 1622930594.6423013-CDS-C-linearis_contig80:667247..667391 | 1622930594.6423013-CDS-C-linearis_contig80:667247..667391 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig80 667248..667391 - |
| 1690881150.6627293-CDS-C-linearis_contig80:667247..667391 | 1690881150.6627293-CDS-C-linearis_contig80:667247..667391 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig80 667248..667391 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15911.1 >prot_C-linearis_contig80.15911.1 ID=prot_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=532bp
MPTPNHIRAFEVRLRANWSSEDVVQMLTPDFVESVLLPGFAALEPTIKMR ALIAFLGTCPDHLASLRRLLPPLLRVADGDKDEWVQVVCGLVRQKLLPSE GGDSAGVGEGAAAPKSDFVLRKTAREVLERAKQNILERTGNGEGVADGGG GSSSGEGRHMREAPYFGPLEERYVGRKQQPQKRDFVNAHFSVKYDFVSEF SEDLASNVGGASNTSSSPTGGGASVAAALASRAGQGGLLKAPGSLIPQPT PAAPNLAQARRVSLAAAVDPSAGSDGLRRTSKPLALSRNYAGLQPGSARG TSGVGSVRGVRAGGGGGGGGGGAGNRAGLMMINVDELQAIDTEKQSAREK AKGKPGRKKARVEAGDEEKATGTEPPTETTTSGDQLPDGQAPDKASGKGK AAESEAPVVKSSEPADGPAPIPQQGEIEAVAAMMVLGVGGGGEDAETSYL PEALTKLLENANSLRPEGKAKLESFFQKKTPKGSSQERIKYHEEVNPGAD GEEMVRVTSYIRLHYETWVWDRIHKKKRIKS* back to topmRNA from alignment at C-linearis_contig80:664102..667451- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig80.15911.1 ID=mRNA_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3350bp|location=Sequence derived from alignment at C-linearis_contig80:664102..667451- (Chordaria linearis ClinC8C monoicous) CACGTGTGCCTCCTTGCGCTTCTGCTCGCTGCTTCTCGTCCAGAGAGACG
TGAGAAAGCTATGCCAACTCCAAATCATATTCGTGCTTTCGAAGTAAGGC
TGCGGGCCAATTGGAGCAGCGAAGATGTCGTGCAAATGCTCACACCGGAC
TTCGTGGAATCCGTGTTGCTGCCTGGTTTTGCCGCTCTTGAACCGACCAT
CAAGGTAAGACACCCCGCCTCCCTTCCGTTGGTGGGGGTGGCTTTCGATC
GCACTCAGCACGGCGCGGTTCGAAATACCCAGCTACACGGGCTGTGTGCC
TTAAAGCTCCTAAATCAGCTCTCGAAATGCAGTCTCTAGTGTTGCAACTC
ACCAAGCGTATCATACGCTGTCACCTGTGATCACAACGTCTTCTTCTGTC
TTTACCATCTCAGGCAGGTGATGCAGTTCTATCGTCTGTTCCTCACAATA
ACACTCAGCATATGAGCAGGATGGGATACAGGTGTTGACGAAAACACGGT
CAAATCACCGGCATCCATCAAGACAGATGCGTCGGTTCAACCCCCCCCTG
TCTCCGCATCGGTTCACGAACACAGTCAGTGCTGCTGCTTCCGCTCGTAA
CTGCGGACGCCTTTTCAGATGTTCGGTTCTTGTTGATTTCAATTCGCATA
CAACCCAACAACCACCCTCATGGACAGTGTGCAGAGAGAGGTACAAGTAC
GCCCAGTCGTGGTTCGTATGCTCTACCTCGCTGCCGTGACCTACAGGACG
AATCGATCTCACGTGCAGGTCGTCTTATCTCACGGAGTACGCACCCAAAC
AGCTGTTTCCTCCTATTGAGACTGACTTCAACACTGCTGTATGATCGAGC
CTCAGACAAAGAATCATTTAGTGTATGCAGTTGTTGCGAGACAAATCGCA
GTTGTGATGCAGATTCGGCAGAGCAACCTTAGGAGGGGCACGCACGCCGT
CTTGACACACCACCAGTATTCTTCAGGCCTCGCGAGTCAGGCCTCCCTTT
GGGCGCAAGTACAAATGCCCACGTACATGGAGTCAACCGTTGTCTCTTTG
TTCATTCTTAAATGGCAGCGCAAGGACCTGCTCTTCTTGGCGTACATGTA
ACGTTCAGGTCGCCGTTGGGTTTAGTTGGGTGATGCGCGGCTGTTCGCAT
TTCCCTATCCATGCACGAAGCGCCTAGGTATCGTTGTCCTGTAGTGCACT
ACTATGCTTTCAAGACCATAGAGTTCCCGTTAGCACGAACGCTCTCCCTC
CGTTCCAAACTTCAACCAACTATGCACCTTCTCTTCAGGCATGTCATACG
TTATGGCTGGTTCCCATGTGCTGGAGGCCGGCATGTCGGCATATCCCCAT
TGGTAGCCGCACCCCGGTGCGTAGTATACCCCGAAGCCCGCCCCAAAACA
CTTGCCTTTGAAGAGTTTATTGCTGCTCTGATGCCCTTACCGTTCACGTT
ACCCCAAAATAACCGCTACTCTCTCTACGCCTTCCCTCTTTCTCTTGCTG
GTGGGTGTGATAGATGAGGGCGCTGATCGCCTTCCTAGGAACTTGCCCGG
ACCATCTTGCATCCCTTCGTCGTCTTCTACCCCCGCTTCTGAGAGTTGCG
GACGGCGACAAAGACGAATGGGTTCAGGTGGTATGCGGCCTAGTACGTCA
AAAGCTCTTGCCCAGCGAAGGGGGGGATTCGGCCGGCGTCGGCGAAGGTG
CAGCAGCCCCAAAGAGTGATTTTGTCTTGCGCAAGACTGCCAGGGAAGTT
CTCGAGCGGGCAAAACAGAACATATTGGAGCGCACAGGCAATGGGGAAGG
GGTCGCGGACGGCGGCGGCGGCAGCAGCAGCGGCGAAGGTCGACATATGC
GAGAAGCGCCGTATTTTGGCCCCTTGGAGGAGAGGTACGTCGGCCGCAAG
CAGCAACCCCAAAAGAGGGATTTCGTCAATGCGCACTTCAGCGTCAAGTA
TGACTTTGTCAGCGAATTCTCGGAAGACCTCGCTTCGAACGTCGGTGGCG
CCTCTAATACGTCTTCGTCTCCAACAGGAGGGGGTGCCTCGGTCGCCGCA
GCGCTCGCGTCTAGGGCAGGTCAAGGGGGATTGCTAAAGGCCCCCGGCTC
TTTGATACCCCAGCCCACTCCCGCGGCGCCCAACCTAGCGCAAGCGCGAA
GGGTCTCGCTTGCTGCGGCGGTAGACCCATCTGCAGGATCCGATGGCCTC
CGCAGGACCAGCAAGCCCTTGGCACTATCTCGGAATTACGCCGGGCTTCA
GCCTGGTTCGGCGCGGGGGACTTCGGGTGTCGGGAGCGTGCGTGGCGTGC
GCGCGGGGGGCGGCGGGGGCGGAGGCGGCGGCGGTGCCGGCAATAGAGCG
GGCTTGATGATGATCAATGTAGACGAGCTGCAGGCAATAGACACAGAAAA
ACAGTCTGCGCGGGAAAAGGCGAAAGGGAAACCCGGCAGAAAGAAGGCCA
GGGTTGAAGCGGGCGACGAGGAAAAGGCCACCGGCACCGAGCCTCCCACC
GAGACAACGACAAGTGGGGATCAACTACCGGACGGACAAGCACCGGACAA
GGCGAGTGGCAAGGGGAAGGCGGCTGAGTCCGAGGCACCAGTAGTGAAAT
CTTCGGAACCAGCGGATGGGCCAGCACCTATCCCGCAGCAGGGCGAGATT
GAGGCGGTCGCGGCGATGATGGTCCTCGGAGTCGGCGGGGGGGGTGAAGA
CGCAGAGACTTCCTATCTCCCAGAAGCGCTGACGAAGCTCTTGGAAAATG
CCAACTCGCTCAGACCGGAAGGCAAGGCCAAGCTGGAGAGTTTTTTCCAG
AAGAAAACCCCGAAAGGGTCGTCGCAGGAAAGGATCAAGTATCACGAGGA
GGTTAACCCTGGGGCGGACGGGGAGGAGATGGTGCGGGTGACAAGCTACA
TTCGCCTGCATTACGAGACCTGGGTCTGGGATAGGATTCACAAGAAGAAG
CGTATCAAATCGTGACTTCGGTAGCTTGTTGTGCGAGAGTAGGTGAGAGC
GGGAAACACAGATCCTGCTCGTGTATGTGTTGTAGTCCGCCCACTCTCTA
ACCAGCGCGGGACCAGCGCGGGCGCTGCAACCTTTAGTTTCGTTGATTAA
GGTAATTTCGTTGACTTGGAGTGTAATTTAGGGAAGAGCTAGATATGCAT
GTCGTAGGATGTGAATCCCTGCTGCTGCTGTTGTTGCGCGTCTCGGGTTG
GTCGACAGGATGCACCTGGTCGTCTGTTACGGGTTTCTTCACACATTTTC
ACGGCGGCAAGTGTTTTTCTCGTGTCTCATGTTCTCGTCAAATGTGGGCA
CCAGCGCCGATTGCGAGGAAATAACCAGTTTTTTTTACTCTGGATGCTAT
back to topCoding sequence (CDS) from alignment at C-linearis_contig80:664102..667451- >mRNA_C-linearis_contig80.15911.1 ID=mRNA_C-linearis_contig80.15911.1|Name=mRNA_C-linearis_contig80.15911.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3192bp|location=Sequence derived from alignment at C-linearis_contig80:664102..667451- (Chordaria linearis ClinC8C monoicous) ATGCCAACTCCAAATCATATTCGTGCTTTCGAAGTAAGGCTGCGGGCCAA TTGGAGCAGCGAAGATGTCGTGCAAATGCTCACACCGGACTTCGTGGAAT CCGTGTTGCTGCCTGGTTTTGCCGCTCTTGAACCGACCATCAAGATGCCA ACTCCAAATCATATTCGTGCTTTCGAAGTAAGGCTGCGGGCCAATTGGAG CAGCGAAGATGTCGTGCAAATGCTCACACCGGACTTCGTGGAATCCGTGT TGCTGCCTGGTTTTGCCGCTCTTGAACCGACCATCAAGATGAGGGCGCTG ATCGCCTTCCTAGGAACTTGCCCGGACCATCTTGCATCCCTTCGTCGTCT TCTACCCCCGCTTCTGAGAGTTGCGGACGGCGACAAAGACGAATGGGTTC AGGTGGTATGCGGCCTAGTACGTCAAAAGCTCTTGCCCAGCGAAGGGGGG GATTCGGCCGGCGTCGGCGAAGGTGCAGCAGCCCCAAAGAGTGATTTTGT CTTGCGCAAGACTGCCAGGGAAGTTCTCGAGCGGGCAAAACAGAACATAT TGGAGCGCACAGGCAATGGGGAAGGGGTCGCGGACGGCGGCGGCGGCAGC AGCAGCGGCGAAGGTCGACATATGCGAGAAGCGCCGTATTTTGGCCCCTT GGAGGAGAGGTACGTCGGCCGCAAGCAGCAACCCCAAAAGAGGGATTTCG TCAATGCGCACTTCAGCGTCAAGTATGACTTTGTCAGCGAATTCTCGGAA GACCTCGCTTCGAACGTCGGTGGCGCCTCTAATACGTCTTCGTCTCCAAC AGGAGGGGGTGCCTCGGTCGCCGCAGCGCTCGCGTCTAGGGCAGGTCAAG GGGGATTGCTAAAGGCCCCCGGCTCTTTGATACCCCAGCCCACTCCCGCG GCGCCCAACCTAGCGCAAGCGCGAAGGGTCTCGCTTGCTGCGGCGGTAGA CCCATCTGCAGGATCCGATGGCCTCCGCAGGACCAGCAAGCCCTTGGCAC TATCTCGGAATTACGCCGGGCTTCAGCCTGGTTCGGCGCGGGGGACTTCG GGTGTCGGGAGCGTGCGTGGCGTGCGCGCGGGGGGCGGCGGGGGCGGAGG CGGCGGCGGTGCCGGCAATAGAGCGGGCTTGATGATGATCAATGTAGACG AGCTGCAGGCAATAGACACAGAAAAACAGTCTGCGCGGGAAAAGGCGAAA GGGAAACCCGGCAGAAAGAAGGCCAGGGTTGAAGCGGGCGACGAGGAAAA GGCCACCGGCACCGAGCCTCCCACCGAGACAACGACAAGTGGGGATCAAC TACCGGACGGACAAGCACCGGACAAGGCGAGTGGCAAGGGGAAGGCGGCT GAGTCCGAGGCACCAGTAGTGAAATCTTCGGAACCAGCGGATGGGCCAGC ACCTATCCCGCAGCAGGGCGAGATTGAGGCGGTCGCGGCGATGATGGTCC TCGGAGTCGGCGGGGGGGGTGAAGACGCAGAGACTTCCTATCTCCCAGAA GCGCTGACGAAGCTCTTGGAAAATGCCAACTCGCTCAGACCGGAAGGCAA GGCCAAGCTGGAGAGTTTTTTCCAGAAGAAAACCCCGAAAGGGTCGTCGC AGGAAAGGATCAAGTATCACGAGGAGGTTAACCCTGGGGCGGACGGGGAG GAGATGGTGCGGGTGACAAGCTACATTCGCCTGCATTACGAGACCTGGGT CTGGGATAGGATTCACAAGAAGAAGCGTATCAAATCGTGAATGAGGGCGC TGATCGCCTTCCTAGGAACTTGCCCGGACCATCTTGCATCCCTTCGTCGT CTTCTACCCCCGCTTCTGAGAGTTGCGGACGGCGACAAAGACGAATGGGT TCAGGTGGTATGCGGCCTAGTACGTCAAAAGCTCTTGCCCAGCGAAGGGG GGGATTCGGCCGGCGTCGGCGAAGGTGCAGCAGCCCCAAAGAGTGATTTT GTCTTGCGCAAGACTGCCAGGGAAGTTCTCGAGCGGGCAAAACAGAACAT ATTGGAGCGCACAGGCAATGGGGAAGGGGTCGCGGACGGCGGCGGCGGCA GCAGCAGCGGCGAAGGTCGACATATGCGAGAAGCGCCGTATTTTGGCCCC TTGGAGGAGAGGTACGTCGGCCGCAAGCAGCAACCCCAAAAGAGGGATTT CGTCAATGCGCACTTCAGCGTCAAGTATGACTTTGTCAGCGAATTCTCGG AAGACCTCGCTTCGAACGTCGGTGGCGCCTCTAATACGTCTTCGTCTCCA ACAGGAGGGGGTGCCTCGGTCGCCGCAGCGCTCGCGTCTAGGGCAGGTCA AGGGGGATTGCTAAAGGCCCCCGGCTCTTTGATACCCCAGCCCACTCCCG CGGCGCCCAACCTAGCGCAAGCGCGAAGGGTCTCGCTTGCTGCGGCGGTA GACCCATCTGCAGGATCCGATGGCCTCCGCAGGACCAGCAAGCCCTTGGC ACTATCTCGGAATTACGCCGGGCTTCAGCCTGGTTCGGCGCGGGGGACTT CGGGTGTCGGGAGCGTGCGTGGCGTGCGCGCGGGGGGCGGCGGGGGCGGA GGCGGCGGCGGTGCCGGCAATAGAGCGGGCTTGATGATGATCAATGTAGA CGAGCTGCAGGCAATAGACACAGAAAAACAGTCTGCGCGGGAAAAGGCGA AAGGGAAACCCGGCAGAAAGAAGGCCAGGGTTGAAGCGGGCGACGAGGAA AAGGCCACCGGCACCGAGCCTCCCACCGAGACAACGACAAGTGGGGATCA ACTACCGGACGGACAAGCACCGGACAAGGCGAGTGGCAAGGGGAAGGCGG CTGAGTCCGAGGCACCAGTAGTGAAATCTTCGGAACCAGCGGATGGGCCA GCACCTATCCCGCAGCAGGGCGAGATTGAGGCGGTCGCGGCGATGATGGT CCTCGGAGTCGGCGGGGGGGGTGAAGACGCAGAGACTTCCTATCTCCCAG AAGCGCTGACGAAGCTCTTGGAAAATGCCAACTCGCTCAGACCGGAAGGC AAGGCCAAGCTGGAGAGTTTTTTCCAGAAGAAAACCCCGAAAGGGTCGTC GCAGGAAAGGATCAAGTATCACGAGGAGGTTAACCCTGGGGCGGACGGGG AGGAGATGGTGCGGGTGACAAGCTACATTCGCCTGCATTACGAGACCTGG GTCTGGGATAGGATTCACAAGAAGAAGCGTATCAAATCGTGA back to top
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