mRNA_C-linearis_contig8.15680.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A6H5K120_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K120_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 8.680e-138 Identity = 255/366 (69.67%), Postives = 282/366 (77.05%), Query Frame = 1
Query: 73 MARSMLTYALCVCQLVTTAAFL-SSPKIAPVLVS-PSSSHSPL-----------QRPKLPHAVVQRQTGRTAVAS--LPRRHRIQQQARDCEALGIDNELTVPRTLESGRNTAVEETGSSCRSQASRRSLATPRFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKA---MLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGK-GGNKASDFSSK 1113
M+RS+ TY+L L AFL SSPK+AP+ + P SS+SPL Q +L H +R TGR A + P H Q Q RD E P +G +T ET S + ++ L TPRFAAL ASAL GLAV+VLAPG A+AAVKA VAGSEDE HLH+GQKVA FR+GGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIP+ILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKA MLSIFLGV+SAG+IMSCLTLAGKAGALVATAVLAVFCV+++LGGG+ GGNKASDF+SK
Sbjct: 1 MSRSIFTYSLFFSHLAMATAFLASSPKVAPLFTTQPLSSYSPLRSLEQRAPRRQQSLQLSHEATKRATGRAATVAHVAPGHHSRQAQGRDAP------EHERPVVASAGLSTFEMET-SPTGLPSRKKPLFTPRFAALTASALAVGLAVSVLAPGTASAAVKAIVAGSEDEAHLHVGQKVAKFFRRGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPIILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKASKAMLSIFLGVVSAGVIMSCLTLAGKAGALVATAVLAVFCVTNMLGGGEDGGNKASDFASK 359
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A835YGM4_9STRA (Putative small multi-drug export protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGM4_9STRA) HSP 1 Score: 248 bits (633), Expect = 3.410e-75 Identity = 136/199 (68.34%), Postives = 159/199 (79.90%), Query Frame = 1
Query: 478 VLAPGPAAAAVKA--AVAGSEDEVHLHLGQKVANLFRQ-GGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSI 1065
+L P A AAV+ A A + E HLH+GQK+A R G LPDW T+ ISAMPVVELRGG+PVG+WMG+PIAKVFGLCVAGNM+PIP+ILLALRSS VQ + KP LDRAR KA FGD + QA+AL LFVGIPLPGTGAWTGAM A +LGMP K++ +IF GV+SAG IM+ LTLAGKAGA+ ATAVLA+FCV+SI
Sbjct: 1 MLQPERALAAVRVVTAAAAAAPEEHLHVGQKIAMYCRTTGNLPDWLTIALISAMPVVELRGGIPVGLWMGLPIAKVFGLCVAGNMVPIPLILLALRSSAVQNVLKPFLDRARSKAKEFGDAEKQAVALLLFVGIPLPGTGAWTGAMIASILGMPVAKSLAAIFAGVVSAGAIMTALTLAGKAGAIAATAVLAIFCVTSI 199
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S1UT50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UT50_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.710e-59 Identity = 114/181 (62.98%), Postives = 133/181 (73.48%), Query Frame = 1
Query: 544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGK 1080
HLH+GQK+AN FR GLPD L ISA+PVVELRG VPVG+WMG+PI V CV GNMIPI ILL LR+ ++KL +P+L RA +K+A G G + Q +L FVGIPLPGTGAWTGAMGAFLLGMPF A+ SIF GV+SAG+IMS LTLAG+ GAL A A LA+F LGG K
Sbjct: 65 HLHVGQKIANYFRSFGLPDTVILAIISALPVVELRGAVPVGVWMGLPITTVLPACVFGNMIPIVPILLLLRNERLKKLMEPILSRAEKKSASLGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPFAVALSSIFTGVVSAGVIMSALTLAGRKGALAALAALALFTSKEFLGGPK 245
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2Y2N1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2N1_9STRA) HSP 1 Score: 210 bits (535), Expect = 4.190e-59 Identity = 122/200 (61.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query: 448 SALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAV 1047
+ALV AVAV P A+AA + A S +E HLHLGQK+AN FR+ GLPD LM ISAMPVVELRGG+PVG WMG+P+ V LCV GN+IPI +L AL++ +QK+ KPVLDRA EK+ G G EK+++LA+ LFVGIPLPGTGAWTGAMGAFLLGM F+++ +I GVL AG+IMS L AGK GA+ AT + V
Sbjct: 130 AALVIMAAVAVK-PLSASAAEALSTAVSAEE-HLHLGQKIANQFRKTGLPDEVVLMIISAMPVVELRGGIPVGQWMGLPLLNVLALCVVGNLIPIIPLLAALKNKTIQKVMKPVLDRAAEKSKGLGSEKNRSLAVALFVGIPLPGTGAWTGAMGAFLLGMGFRESASAISAGVLLAGIIMSILVKAGKTGAIAATVAMIV 327
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A6S8U4Q8_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8U4Q8_9STRA) HSP 1 Score: 210 bits (535), Expect = 4.360e-56 Identity = 120/207 (57.97%), Postives = 144/207 (69.57%), Query Frame = 1
Query: 466 LAVAVLAPGPAAAAVKAAVAGSEDEV--HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREK--AAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGG 1074
+A+ A PAA A K++ + EV HLH GQKVAN FR G+PD A L ISAMPV+ELRG VPVGIWMG+PI KV CV GNM+PI +L L++ ++KL KP+LDRA +K A G G + Q +L FVGIPLPGTGAWTGAMGAFLLGMP +A+ SIF GV+SAG+IMS +TLAGK G L A A+LA LGG
Sbjct: 107 MAIVTSAAPPAALAAKSSAIAAAPEVVEHLHTGQKVANFFRSFGIPDLAILSIISAMPVIELRGAVPVGIWMGLPITKVLPACVFGNMVPIIPLLFLLKNETLKKLMKPILDRAEKKSSALGVGSPEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTARAISSIFTGVVSAGLIMSAITLAGKKGGLAALAILAAVTGKEFLGG 313
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2C209_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C209_9EUKA) HSP 1 Score: 195 bits (495), Expect = 2.860e-54 Identity = 119/213 (55.87%), Postives = 144/213 (67.61%), Query Frame = 1
Query: 427 RFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSI 1065
RF A AA+AL L VA PA A + G+ HLH GQK+A FR+ GLPDWATL+ ISA+P VELRGGVPVG WMG+ +C+ GNM+PI ILLA RS FV+ KP++ RA +K AG +S+ LAL LFVG+P PGTGAWTGA ++LLGMPF AM +IF GV+ AGMIM+ LTLAGK GALVA A L F + +I
Sbjct: 53 RFGAAAATALPLMLGVA----RPALALASGGIEGA----HLHTGQKIALYFRKFGLPDWATLVLISAVPGVELRGGVPVGNWMGLSPWATLIICILGNMLPIAPILLAFRSDFVKAKLKPLITRAEKKLAGLPKGQSRELALALFVGVPAPGTGAWTGATISYLLGMPFGTAMGAIFAGVVIAGMIMTVLTLAGKLGALVALAALMTFGIGAI 257
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S4AR77_9STRA (Ferredoxin--NADP(+) reductase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A7S4AR77_9STRA) HSP 1 Score: 204 bits (520), Expect = 2.950e-54 Identity = 121/218 (55.50%), Postives = 150/218 (68.81%), Query Frame = 1
Query: 457 VAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFG--DEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGGKGGNKASDF 1104
VA +A+ L PA AA K AVA E HLH GQK+AN F GLP WA L ISAMPVVELRG +PVG+WMG+PI +VF +CV GNM+PI +L L++ ++KL P+L RA +K+AG G D K Q ++L FVGIPLPGTGAWTGAMGAFLLGMP A+ +IF GV SAG IM+ LTLAG+ G +VA +VL F ++ + K +A DF
Sbjct: 97 VALVALTFLTSSPAFAA-KTAVAADPVE-HLHTGQKIANFFINFGLPKWAVLSVISAMPVVELRGAIPVGVWMGLPIEQVFPICVLGNMVPIVPLLFLLKNPTLKKLMGPILRRAEKKSAGLGGGDVKKQWVSLAAFVGIPLPGTGAWTGAMGAFLLGMPTPVALSAIFAGVFSAGCIMTALTLAGRKGGIVALSVLIAFAINELFF--KKSEQAQDF 310
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A1E7FFY0_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFY0_9STRA) HSP 1 Score: 204 bits (520), Expect = 3.320e-54 Identity = 122/228 (53.51%), Postives = 154/228 (67.54%), Query Frame = 1
Query: 391 RSQASRRSLATPRFAALAASALVAGLAVAVLAPGPAAAAVKAAVAGSEDEVHLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAAGFG--DEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSIL 1068
R+ A ++L+ +F +A ALV L PA AA KA V E HLH GQK+AN F GLP WA L TISAMPVVELRG +PVG+WMG+PI +V CV GNMIPI +L L++ ++KL P+L+RA +KAAG G + Q ++L FVGIPLPGTGAWTGAMG+FLLGMP A+ SIF GV+SAG+IM+ LTLAG+ G L+A +VL F + +L
Sbjct: 86 RANAKSKTLSMSKFLKTSAMALV----TLSLLTSPAFAAKKAVV---ETVEHLHTGQKIANFFMSFGLPKWAVLATISAMPVVELRGAIPVGVWMGLPIQQVLLTCVIGNMIPIVPLLFLLKNPSLKKLMSPILNRAEKKAAGLGVGSLEKQWVSLAAFVGIPLPGTGAWTGAMGSFLLGMPTLFALSSIFAGVVSAGLIMTALTLAGRTGGLIAISVLIAFAANEVL 306
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S2S836_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S836_9STRA) HSP 1 Score: 196 bits (499), Expect = 4.520e-54 Identity = 106/170 (62.35%), Postives = 127/170 (74.71%), Query Frame = 1
Query: 544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAV 1047
HLH+GQKVAN FR G+PD A L ISA+PV+ELRG VPVG+WMG+PI V CV GNM+PI +L LR+ ++KL KP+L RA +K+A G G + Q +L FVGIPLPGTGAWTGAMGAFLLGMP A+ SIF GV+SAG+IMS LTLAGK G + A AVLA+
Sbjct: 137 HLHVGQKVANYFRSFGIPDVAILALISALPVIELRGAVPVGLWMGLPITTVLPACVMGNMLPIIPLLFLLRNEKLKKLMKPILTRAEKKSASLGVGSVEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTALAISSIFTGVVSAGLIMSALTLAGKKGGIAALAVLAI 306
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Match: A0A7S1ZZ20_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ20_TRICV) HSP 1 Score: 192 bits (488), Expect = 4.550e-54 Identity = 104/180 (57.78%), Postives = 127/180 (70.56%), Query Frame = 1
Query: 544 HLHLGQKVANLFRQGGLPDWATLMTISAMPVVELRGGVPVGIWMGMPIAKVFGLCVAGNMIPIPVILLALRSSFVQKLAKPVLDRAREKAA--GFGDEKSQALALTLFVGIPLPGTGAWTGAMGAFLLGMPFQKAMLSIFLGVLSAGMIMSCLTLAGKAGALVATAVLAVFCVSSILGGG 1077
HLH+GQKVAN FR GLPD A L ISAMPV+ELRG VPVG+WMG+P+ V CV GNM+PI ++ LR+ ++KL P+L RA +K+A G G + Q +L FVGIPLPGTGAWTGAMGAFLLGMP A+ +IF GV+SAG+IMS +TLAGK G + A A LA+ L G
Sbjct: 24 HLHVGQKVANYFRTFGLPDTAILALISAMPVIELRGAVPVGLWMGLPLTTVLPACVMGNMVPIVPLMFLLRNEKLKKLMSPILSRAEKKSASLGVGSLEKQWASLAAFVGIPLPGTGAWTGAMGAFLLGMPTGLALSAIFTGVVSAGVIMSAITLAGKKGGIAALAALALITGREFLASG 203 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15680.1 >prot_C-linearis_contig8.15680.1 ID=prot_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=348bp MARSMLTYALCVCQLVTTAAFLSSPKIAPVLVSPSSSHSPLQRPKLPHAVback to top mRNA from alignment at C-linearis_contig8:2532488..2534633- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15680.1 ID=mRNA_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2146bp|location=Sequence derived from alignment at C-linearis_contig8:2532488..2534633- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2532488..2534633- >mRNA_C-linearis_contig8.15680.1 ID=mRNA_C-linearis_contig8.15680.1|Name=mRNA_C-linearis_contig8.15680.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at C-linearis_contig8:2532488..2534633- (Chordaria linearis ClinC8C monoicous)back to top |